mRNA_Ecto-sp13_S_contig8663.20109.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8663.20109.1
Unique NamemRNA_Ecto-sp13_S_contig8663.20109.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8663.20109.1 vs. uniprot
Match: D7FMF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF9_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 8.560e-13
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:  157 MGGLTGVSWALLVIHSIWSCALGLDMRKFWRM 252
            MGGLTGVSWALLV+HSIWS ALGLDM KFWRM
Sbjct:    1 MGGLTGVSWALLVVHSIWSFALGLDMHKFWRM 32
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8663.20109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMF9_ECTSI8.560e-1390.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8663contigEcto-sp13_S_contig8663:4969..6245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size256
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464138.483958-CDS-Ecto-sp13_S_contig8663:4968..51021681464138.483958-CDS-Ecto-sp13_S_contig8663:4968..5102Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8663 4969..5102 +
1681464138.495723-CDS-Ecto-sp13_S_contig8663:6124..62451681464138.495723-CDS-Ecto-sp13_S_contig8663:6124..6245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8663 6125..6245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8663.20109.1prot_Ecto-sp13_S_contig8663.20109.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8663 4969..6245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8663.20109.1

>prot_Ecto-sp13_S_contig8663.20109.1 ID=prot_Ecto-sp13_S_contig8663.20109.1|Name=mRNA_Ecto-sp13_S_contig8663.20109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
VLSLAAVASANEWGRADSTDSHTFNHDCSSAEVSFSRWQSEKNKEQIRGV
QQMGGLTGVSWALLVIHSIWSCALGLDMRKFWRM*
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mRNA from alignment at Ecto-sp13_S_contig8663:4969..6245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8663.20109.1 ID=mRNA_Ecto-sp13_S_contig8663.20109.1|Name=mRNA_Ecto-sp13_S_contig8663.20109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1277bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8663:4969..6245+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTCTCCCTCGCGGCGGTCGCATCAGCGAACGAGTGGGGGCGTGCTGA
CTCTACCGATTCACACACCTTCAACCACGACTGCAGCTCAGCAGAGGTTT
CCTTCTCTCGGTGGCAATCCGAAAAAAACAAGGAGTGAGTAGATAAGCCG
TTCGTTGGCACTGGCGTACACTGCGCTACAGATTTTCGCGTGTGCTACTT
CTGTTGGACGTCTGCTGACGTATACTCACGACAGACGAGTTAACTACCCA
GCAGATCTTGCTTGGTTAGCTTTTCGAGTTGCTCCTGCATATACTGCTGC
TGCAGTGTGTTCGGAAGGAGCATTTTGAGCGCCGAGTGCGGAGCTCGCGG
TGTTGGGATTTGGTGTGAAAGTGGAGGGTGAGGGGCGGTTTACTGTAGAC
ACACATGTCTAGCTTCTGCACGATTACAAACGTTCGGCCGGTTGATGGGG
CCACCTACATAACGTGCATGATAAATGTCATGCTGTACCCTTATGTCGGT
GCGTATGGGGCGAAGGAAAACAATACAACGCGCAGTGGCACGCTTGCGAG
AAAGGAGAGTCATCCTACTTCTACGTTCTACTGTTGTTAGGGATTGGTTC
GCGACATGACTACTGTTGTAGGAGTAGTGTTTTAAAAAGGTTGCCGACGC
CCTACGTACGTAAAGTACAGTTTTTGAGTGATATTTTTGTCTTGTTTGTT
CGTCGCCAAGACACACACACAACACAAACGGAAACTAGCCCAATACTTGG
CGGTTGTGTTCTTTGTAAGTAACAAACAACAAGGTGCGTTCGGCGAAGTC
GAGTTCAATGCTGTAGGTCGTCTCAGAAGACAAGCGTGCCGTGCGCGTTC
TGCCGTATCGACGTGCCAACGAAAAACCCACCAGAACAACTACAGAGCGA
ATTATCACTACTACTATGCTTCAGGTACGTTTCGAACATGGCTGCGTGCA
CAACGAGAAGGCGTGCGTGAGGAAGCTACCGTCAACAGCAGGAGCGGTAA
TCACATCAACACCAGCTACAAGCAAGAACGAATGCCATTTCCGAGCGTCA
TCACCACGACAGCATCAACCTTGCCTGCTGCAAGCAGCGGTGCAATACGA
AGGGCACGGCATAACCATCATCCCTTTCTCCACCTTCCGATGTTTCTCTT
TCGCAGGCAAATTCGAGGCGTTCAACAGATGGGAGGGCTTACAGGCGTAT
CATGGGCTCTCCTGGTGATTCATTCGATATGGTCTTGTGCACTTGGTCTT
GATATGCGCAAGTTCTGGAGAATGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8663:4969..6245+

>mRNA_Ecto-sp13_S_contig8663.20109.1 ID=mRNA_Ecto-sp13_S_contig8663.20109.1|Name=mRNA_Ecto-sp13_S_contig8663.20109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8663:4969..6245+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTCTCCCTCGCGGCGGTCGCATCAGCGAACGAGTGGGGGCGTGCTGA
CTCTACCGATTCACACACCTTCAACCACGACTGCAGCTCAGCAGAGGTTT
CCTTCTCTCGGTGGCAATCCGAAAAAAACAAGGAGCAAATTCGAGGCGTT
CAACAGATGGGAGGGCTTACAGGCGTATCATGGGCTCTCCTGGTGATTCA
TTCGATATGGTCTTGTGCACTTGGTCTTGATATGCGCAAGTTCTGGAGAA
TGTGA
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