prot_Ecto-sp13_S_contig8645.20086.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8645.20086.1
Unique Nameprot_Ecto-sp13_S_contig8645.20086.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length147
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8645.20086.1 vs. uniprot
Match: D7FMA3_ECTSI (PHD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMA3_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 7.460e-72
Identity = 122/127 (96.06%), Postives = 124/127 (97.64%), Query Frame = 0 
Query:   13 MLSWSIINDEPHHGEEAATAAIDEGQTSRETTEAREARHNAVYEQALALHGEGSPHSDAWARAKKLYDTVISDEPAEDKRSASSFGTPVRFLCLKNLADMVEREGDEARALELQVAAADEDGTDVAV 139
            MLSWSIINDEPHHGEEAATAAIDEGQ SRETTEAREARHNAVYEQALALHGEG+PHSDAWARAKKLYDTVISDEP EDKRSASSFGTPVRFLCLKNLADMVEREGD+ARALELQVAAADED TDVAV
Sbjct:    1 MLSWSIINDEPHHGEEAATAAIDEGQASRETTEAREARHNAVYEQALALHGEGAPHSDAWARAKKLYDTVISDEPMEDKRSASSFGTPVRFLCLKNLADMVEREGDKARALELQVAAADEDATDVAV 127
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8645.20086.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMA3_ECTSI7.460e-7296.06PHD domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 106..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8645contigEcto-sp13_S_contig8645:23..3145 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8645.20086.1mRNA_Ecto-sp13_S_contig8645.20086.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8645 23..3145 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8645.20086.1 ID=prot_Ecto-sp13_S_contig8645.20086.1|Name=mRNA_Ecto-sp13_S_contig8645.20086.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
THTAVPGGGLESMLSWSIINDEPHHGEEAATAAIDEGQTSRETTEAREAR
HNAVYEQALALHGEGSPHSDAWARAKKLYDTVISDEPAEDKRSASSFGTP
VRFLCLKNLADMVEREGDEARALELQVAAADEDGTDVAVRQTDKLP*
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