mRNA_Ecto-sp13_S_contig8645.20086.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8645.20086.1
Unique NamemRNA_Ecto-sp13_S_contig8645.20086.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8645.20086.1 vs. uniprot
Match: D7FMA3_ECTSI (PHD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMA3_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 7.460e-72
Identity = 122/127 (96.06%), Postives = 124/127 (97.64%), Query Frame = 1 
Query:   37 MLSWSIINDEPHHGEEAATAAIDEGQTSRETTEAREARHNAVYEQALALHGEGSPHSDAWARAKKLYDTVISDEPAEDKRSASSFGTPVRFLCLKNLADMVEREGDEARALELQVAAADEDGTDVAV 417
            MLSWSIINDEPHHGEEAATAAIDEGQ SRETTEAREARHNAVYEQALALHGEG+PHSDAWARAKKLYDTVISDEP EDKRSASSFGTPVRFLCLKNLADMVEREGD+ARALELQVAAADED TDVAV
Sbjct:    1 MLSWSIINDEPHHGEEAATAAIDEGQASRETTEAREARHNAVYEQALALHGEGAPHSDAWARAKKLYDTVISDEPMEDKRSASSFGTPVRFLCLKNLADMVEREGDKARALELQVAAADEDATDVAV 127
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8645.20086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMA3_ECTSI7.460e-7296.06PHD domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8645contigEcto-sp13_S_contig8645:23..3145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size442
Hectar predicted targeting categoryother localisation
Exons4
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464136.960928-CDS-Ecto-sp13_S_contig8645:22..2061681464136.960928-CDS-Ecto-sp13_S_contig8645:22..206Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8645 23..206 -
1681464136.972246-CDS-Ecto-sp13_S_contig8645:1422..15301681464136.972246-CDS-Ecto-sp13_S_contig8645:1422..1530Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8645 1423..1530 -
1681464136.98253-CDS-Ecto-sp13_S_contig8645:1782..18921681464136.98253-CDS-Ecto-sp13_S_contig8645:1782..1892Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8645 1783..1892 -
1681464136.9934013-CDS-Ecto-sp13_S_contig8645:3106..31451681464136.9934013-CDS-Ecto-sp13_S_contig8645:3106..3145Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8645 3107..3145 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8645.20086.1prot_Ecto-sp13_S_contig8645.20086.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8645 23..3145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8645.20086.1

>prot_Ecto-sp13_S_contig8645.20086.1 ID=prot_Ecto-sp13_S_contig8645.20086.1|Name=mRNA_Ecto-sp13_S_contig8645.20086.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
THTAVPGGGLESMLSWSIINDEPHHGEEAATAAIDEGQTSRETTEAREAR
HNAVYEQALALHGEGSPHSDAWARAKKLYDTVISDEPAEDKRSASSFGTP
VRFLCLKNLADMVEREGDEARALELQVAAADEDGTDVAVRQTDKLP*
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mRNA from alignment at Ecto-sp13_S_contig8645:23..3145-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8645.20086.1 ID=mRNA_Ecto-sp13_S_contig8645.20086.1|Name=mRNA_Ecto-sp13_S_contig8645.20086.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8645:23..3145- (Ectocarpus species13 EcNAP12_S_4_19m)
ACACACACAGCGGTGCCGGGCGGAGGCTTGGAGAGCATGGTAAGACTATT
AAGGAGGAGGACGCAAGATCGAGACGTTGCTTTCACCATTATCTCTAAAA
GACCGCCAGAGACGAAGAGAGATTGAGATATTTTAACTCTAAATTTGAAA
AATCAAACGAATTGGATGCAGGACAGTTTTGCACCGTGTTTTTCACCGCG
GCCTGATCGCTCTGTACCCAACTCTCTCTGCTGCTGTCGCTGCTATGGTA
CAGTGTAGTATTGCACCATGTTAAATCCTCCGGCACCCTTGGTTAATTTT
TGTTGTGATGGCACAACAACGATGTGTAGGAGAAATCACATCTGCACTGC
TGTTAGACGACAGATGTATTCCACCGCACTCTCTTAAAGCTACTGCACAA
ACCAGTTGCACTTTTGTGACCGCCTGCTGGAGCTGGCCTGCTGTGTACAT
GCTGAGGAATGCACTTCTGTAGTAGCAGCAATGTTTTCAAAGGAAACATG
GAAACTCTCCGCTTGCTGCCGCCATAAACACCCTCTGAGTCACGCACGGC
GGGCCAAAATCGCCCGACCGGGACACAGCGGTACAAGTAGGCGCGTATAT
AGATAGTAGCAGTAGGCGCGTACATAGATAGTCGCACGTATGTTTTGAAG
AAGCGGCACGTTCGAGAACGTCGACTATATCTGAGAAACACAGCAGTGCG
GGGCTTAGCTTAGCACAGCAGTTCTGACCGCAGGTGGTTTACAAATACAC
ATACACTGCTGCCGTACCCGTGTTTGTTCGCTGGCGTGGATTCGCACACC
GTCCGCTCGGACATCGAAACACGACATCAACAAACCACTGTTCATGTTGT
TGCGCGCTGCTGTCGTTGGCGAACGGGGTGAAGTGCAAAGAACGACGACA
TAGGAAAAGTAGAAAAGTGGTCTGTCTGTATGAAGTATATGTCATTTGTA
TATGCAAGGGGCGCTATGGGCTTCTCGCGAGGGAAACATGACCCTGTGTG
TGTGCCTTCTCGAACACGCAGGCACGACATGACCGTGTTCCTCGACGCGC
TGGTGTGCGTACGCCCTTGATGGGACCGATCGAAAATCAATCAACCGGTG
TACTGCCTCGTGGACGATGGACGCCCTTGTCAGCATGTACTGTAGACCTA
TGCTAATACCAGAAACGTGTAGCCGGTGCAGCGGGCGCCGGCTGCTTCAA
CGGTGCCTCCCCTTCTCATCCCCCCCCCCCCACCCCCCGGCCCGCACGTA
CAGCTGTCATGGTCCATCATCAACGACGAGCCGCACCATGGAGAAGAAGC
CGCCACGGCGGCCATCGACGAAGGACAGACTTCGAGGGAAACCACGGAGG
CTCGCGAAGCCAGGCGAGAGGAAAAAAAAAAAAATGGTCTGCTAATTACA
AGAGCGCACTTTGTGTTTTTGGACAGCCACCTTTTTTGCCCAAGGCCACC
TTCCCTATCGCGCGGTGGTACCTGCAGCCTCTCGCTCCCCTTTTGTCATG
TGCTCTGGAAGCCGTGTCTCGTCAGGTTGTACGTAGAGGTCAACAACTCG
TTTGGCGTACCCCCCTCCTGCAATTTGCCCCACCGCTTGTGCGTCGTATT
TTGTCTCCCTCCCAGGCACAACGCGGTCTATGAGCAGGCGTTGGCCTTGC
ACGGAGAAGGGTCCCCGCACTCGGACGCCTGGGCGAGAGCGAAGAAGCTA
TACGACACCGTCATCTCTGACGAGTGAGAGAAGAGAGACTTGTTATCCCT
CGGGTTGGGGCTAGAATCATGTCGGTGAAACTTGGGCTCACTTCATCGAC
GGTCACCCCCTCCCCATGTCATGACTACCGTATACAACACGAGATAGCAC
ACCCTCTGGACCGATTTTCAAATCTCGATTCATCAGCAGCAGAAAGAGCG
GGAGTGCCGCAAACGGCGGCGTTGAAACCATCTAGTCGAGAGCTCTCCGA
TAACGTGAGTTTTCTTGTATGCGTCCTCTCCGTCGAGGAGCAATCGAGCT
TTGAAAATCGGTCCAGGGGTTGTGTGTTATCTTGTGTCGTACACGGTATA
ACATATTCTAGCTCGAGATGTCTGGGAACCCTGGCCATCCCCCATTCCCT
CCACCCCCTGTTTCGACACGAAAACGCTTGTTTTGCTCACATCCCCCTCC
TCCCGTCTGTTGCCGGAGTTACGGACATAGGGGGTAGATTTATGAAAAGA
GATGCTCTTAAGGTTTTAACACTCTCTCAATCAATGGGTCTCGCGAGTCC
CCAATGCAGCACTGATGTGAAGGCGCTTGGAGAACAAAAAAAAATAGCCA
ACATCAGCAAGAAAGAGAAACTGTTGCAGACTGAACAAGCTGACTGTTGT
GAAACAGAACCTATAGACACGTAGACCGACGATACATCGTCCCCGTGTGT
CCCGTTTACAAGAGGCGTGTTGGTTCGGGTGACTTGTTTCGGTTATGTTG
CTGGGGGTCTCAGCGAAATTTCTTCTAAGGCGCTCTCCCGTTCTGCTCCC
TCGTTGCTCCTATGACAAGAGTTTGATAGAACCGTGTCCCCAGGGTCTAC
GTGAAATGAAATGAGCGATGTGCGTGTCAGTGAAGCACCGTGCTTTGGAG
CGTCACGCGCAAACGACAACAGACCCCTAAAGCGCCTTCATTCTTCTTCC
TCGCTGTTCCTTATCAAGAATTTTACGTACGCGTGTTCCCTGGGTGGTCA
AAGCGAAATGTGTTGCGGAACGTGCATGTCAGGCAAGCAACATGGTTGCG
CGGAAGCGACATCAGACGCCTCGCACTTGGTACCAATCACCACCCTCCTC
AATGGTCTAACGACTACGGCATGCACGACAATGAGTACACCCCCCCTTCC
CCCCTCTTCCCCATCGCTTTTATGGCGTCCCGTGCCGCCAAAACACGTGG
TGGAAACACTGCCCTGAAAAAAACTCTGGGAAAAAATAGACCGGCGGAGG
ACAAGAGGTCGGCGTCCAGCTTCGGCACTCCCGTGCGGTTCCTTTGCCTC
AAGAACCTCGCCGACATGGTCGAGAGGGAGGGCGACGAGGCGAGGGCGCT
GGAGCTACAGGTCGCCGCTGCCGACGAGGACGGGACTGACGTGGCGGTGA
GACAGACAGACAAATTACCATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8645:23..3145-

>mRNA_Ecto-sp13_S_contig8645.20086.1 ID=mRNA_Ecto-sp13_S_contig8645.20086.1|Name=mRNA_Ecto-sp13_S_contig8645.20086.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8645:23..3145- (Ectocarpus species13 EcNAP12_S_4_19m)
ACACACACAGCGGTGCCGGGCGGAGGCTTGGAGAGCATGCTGTCATGGTC
CATCATCAACGACGAGCCGCACCATGGAGAAGAAGCCGCCACGGCGGCCA
TCGACGAAGGACAGACTTCGAGGGAAACCACGGAGGCTCGCGAAGCCAGG
CACAACGCGGTCTATGAGCAGGCGTTGGCCTTGCACGGAGAAGGGTCCCC
GCACTCGGACGCCTGGGCGAGAGCGAAGAAGCTATACGACACCGTCATCT
CTGACGAACCGGCGGAGGACAAGAGGTCGGCGTCCAGCTTCGGCACTCCC
GTGCGGTTCCTTTGCCTCAAGAACCTCGCCGACATGGTCGAGAGGGAGGG
CGACGAGGCGAGGGCGCTGGAGCTACAGGTCGCCGCTGCCGACGAGGACG
GGACTGACGTGGCGGTGAGACAGACAGACAAATTACCATAG
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