prot_Ecto-sp13_S_contig86.20016.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig86.20016.1
Unique Nameprot_Ecto-sp13_S_contig86.20016.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length267
Homology
BLAST of mRNA_Ecto-sp13_S_contig86.20016.1 vs. uniprot
Match: D7FQU0_ECTSI (Similar to Leucine rich repeat containing 61 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQU0_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 3.070e-72
Identity = 127/215 (59.07%), Postives = 135/215 (62.79%), Query Frame = 0
Query:   48 QKTGEYDLEVMQWLELPNMGIRRIE---------------NISSCTSIRTLTLCGNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNVSKLPHLRRFFLQDYKGLKSNPACQHPSYHSVVTRFLPQLDVLDGESLNLRKCMVDVILENAKPSDEALKPPERRRWCEGFDWTPDFLDSDVEEDIRSGTEALHD 247
            +KTG YDLEVMQWLELPNM     E               N+ S TS+++L L  NQ                                                    NVSKLPHLRRFFLQDYKGLKSNPACQHPSYHSVVTRFLPQLDVLDGESLNLRKCMVDVIL NAKP+DEALK PERRRWCEGFDWTPDF+DSDVEEDIRSGTEALH+
Sbjct:   16 KKTGAYDLEVMQWLELPNMVAIFSEPSTVLHVRAWLLFPGNLESLTSLQSLDLKDNQISSVDDVG--------------------------------------------NVSKLPHLRRFFLQDYKGLKSNPACQHPSYHSVVTRFLPQLDVLDGESLNLRKCMVDVILGNAKPNDEALKSPERRRWCEGFDWTPDFVDSDVEEDIRSGTEALHE 186          
BLAST of mRNA_Ecto-sp13_S_contig86.20016.1 vs. uniprot
Match: A0A835ZEL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEL2_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.120e-37
Identity = 108/233 (46.35%), Postives = 144/233 (61.80%), Query Frame = 0
Query:   50 TGEYDLEVMQWLELPNMGIRRIENISSCTSIRTLTLCGNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------RNVSKLPHLRRFFLQDYKGLKSNPACQHPSYHSVVTRFLPQLDVLDGESLNLRKCMVDVILENAKPSDEALKPPERRRWCEGFDWTPDFLDSDVEEDIRSGTEALHDVLQECARLNRRARDVLQAM 266
            TGEYDLE++QWL+L N GIR+IE +S+C S+  L L GN+XXXXXXXXXXXXXXXXXXXXXX                      XXXXXXX                R++S+L +L+ F+L+DY G  +NPAC HP+YH VVT+ L  L++LDGESLNLR+CM DVIL+  +   EA KP   +RWC   DW    +++ V++ ++     L + L+ CA  +R A  +L+ M
Sbjct:   40 TGEYDLEMVQWLDLSNRGIRKIECLSNCISMIDLCLSGNRXXXXXXXXXXXXXXXXXXXXXXISRIGKCKKFWMLRIVCCANAGXXXXXXXXXXXXXXXXXXNVDDVRSLSQLSNLKHFYLKDYSGDNANPACNHPAYHIVVTKCLKHLEILDGESLNLRQCMADVILDRVQADPEAAKPLPHQRWCAAADWALPSVEATVDDALQDSIGGLQEALKSCAEASREADRLLRQM 272          
BLAST of mRNA_Ecto-sp13_S_contig86.20016.1 vs. uniprot
Match: A0A6H5JTE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTE0_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 5.500e-28
Identity = 111/117 (94.87%), Postives = 113/117 (96.58%), Query Frame = 0
Query:   48 QKTGEYDLEVMQWLELPNMGIRRIENISSCTSIRTLTLCGNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNVSKLPHLRRFFLQDYKGLKSNP 164
            +KTGEYDLEVMQWLELPNMGIRRIENISSCT+IRTLTLCGNQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  NVSKLPHLRRFFLQDY GLKSNP
Sbjct:   16 KKTGEYDLEVMQWLELPNMGIRRIENISSCTNIRTLTLCGNQIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGNVSKLPHLRRFFLQDYNGLKSNP 132          
BLAST of mRNA_Ecto-sp13_S_contig86.20016.1 vs. uniprot
Match: A0A7S3YG13_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG13_HETAK)

HSP 1 Score: 101 bits (251), Expect = 5.300e-22
Identity = 109/177 (61.58%), Postives = 131/177 (74.01%), Query Frame = 0
Query:   50 TGEYDLEVMQWLELPNMGIRRIENISSCTSIRTLTLCGNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNVSKLPHLRRFFLQDYKGLKSNPACQHPSYHSVVTRFLPQLDVLDGESLNLRKCMVD--VILENAKPSDEALKPPERRRWCEGFD 224
            TGEYDLEV+QWL L   GIR +EN+ SCT+++        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     LP L+ F+L++Y G K NPAC HPSY ++V R+L  + VLDGES +L+K M D   +LE+ +P D+A + P   RW +  D
Sbjct:   71 TGEYDLEVVQWLNLSGNGIRVMENLLSCTNLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKLKHFYLKNYDGSKKNPACDHPSYMTIVLRYLRHITVLDGESTHLQKYMADWEKMLESLRPDDDANRTPPVERWFDEVD 247          
BLAST of mRNA_Ecto-sp13_S_contig86.20016.1 vs. uniprot
Match: A0A7S0PYB6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PYB6_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 9.110e-8
Identity = 78/148 (52.70%), Postives = 97/148 (65.54%), Query Frame = 0
Query:   50 TGEYDLEVMQWLELPNMGIRRIENISSCTSIRTLTLCGNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNVSKLPHLRRFFLQD-YKGL----KSNPACQHPSYHSVVTRFLPQLDVLDGESLNL 192
            +G++DL+ +  L +  MG+R IEN+SSC ++ +L L  N+              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   S+LP LR   LQ  Y G+    ++NP C HP+Y + V R LP L  LDGE  +L
Sbjct:   20 SGQFDLDAVFTLTMARMGLRTIENLSSCPNLTSLDLSHNRIQHIDALDFLKALKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQLPGLRTLHLQTVYDGVVDPDETNPMCSHPAYRTTVRRMLPSLKCLDGEWFDL 167          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86.20016.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FQU0_ECTSI3.070e-7259.07Similar to Leucine rich repeat containing 61 n=1 T... [more]
A0A835ZEL2_9STRA1.120e-3746.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JTE0_9PHAE5.500e-2894.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3YG13_HETAK5.300e-2261.58Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0PYB6_9EUKA9.110e-852.70Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00019LEURICHRPTcoord: 102..115
score: 45.57
coord: 121..134
score: 44.35
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 77..98
e-value: 410.0
score: 2.4
coord: 99..120
e-value: 0.0063
score: 25.7
coord: 55..76
e-value: 410.0
score: 2.4
coord: 121..142
e-value: 0.12
score: 21.4
NoneNo IPR availablePFAMPF14580LRR_9coord: 61..188
e-value: 9.9E-10
score: 38.2
NoneNo IPR availablePANTHERPTHR18849:SF8LEUCINE-RICH REPEAT-CONTAINING 61coord: 49..260
NoneNo IPR availablePANTHERPTHR18849LEUCINE RICH REPEAT PROTEINcoord: 49..260
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..39
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 40..266
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 58..190
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 45..195
e-value: 9.8E-32
score: 111.3
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 57..78
score: 4.709
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 123..144
score: 8.197
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 101..122
score: 9.914
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 79..100
score: 7.743

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86contigEcto-sp13_S_contig86:4822..8812 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86.20016.1mRNA_Ecto-sp13_S_contig86.20016.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig86 4562..9540 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig86.20016.1 ID=prot_Ecto-sp13_S_contig86.20016.1|Name=mRNA_Ecto-sp13_S_contig86.20016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=267bp
MQTEISLPTSTFYVNSGSRLAYSRVHVVGLLVIGFMHTLHARVRACVQKT
GEYDLEVMQWLELPNMGIRRIENISSCTSIRTLTLCGNQIREIAGLDGLV
SLERLDLSSNKIRRIGNLESLTSLQSLDLKDNQISSVEDVRNVSKLPHLR
RFFLQDYKGLKSNPACQHPSYHSVVTRFLPQLDVLDGESLNLRKCMVDVI
LENAKPSDEALKPPERRRWCEGFDWTPDFLDSDVEEDIRSGTEALHDVLQ
ECARLNRRARDVLQAM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt