mRNA_Ecto-sp13_S_contig86.20016.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86.20016.1
Unique NamemRNA_Ecto-sp13_S_contig86.20016.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86.20016.1 vs. uniprot
Match: D7FQU0_ECTSI (Similar to Leucine rich repeat containing 61 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQU0_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 3.980e-68
Identity = 127/215 (59.07%), Postives = 135/215 (62.79%), Query Frame = 3 
Query:  870 QKTGEYDLEVMQWLELPNMGIRRIE---------------NISSCTSIRTLTLCGNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNVSKLPHLRRFFLQDYKGLKSNPACQHPSYHSVVTRFLPQLDVLDGESLNLRKCMVDVILENAKPSDEALKPPERRRWCEGFDWTPDFLDSDVEEDIRSGTEALHD 1469
            +KTG YDLEVMQWLELPNM     E               N+ S TS+++L L  NQ                                                    NVSKLPHLRRFFLQDYKGLKSNPACQHPSYHSVVTRFLPQLDVLDGESLNLRKCMVDVIL NAKP+DEALK PERRRWCEGFDWTPDF+DSDVEEDIRSGTEALH+
Sbjct:   16 KKTGAYDLEVMQWLELPNMVAIFSEPSTVLHVRAWLLFPGNLESLTSLQSLDLKDNQISSVDDVG--------------------------------------------NVSKLPHLRRFFLQDYKGLKSNPACQHPSYHSVVTRFLPQLDVLDGESLNLRKCMVDVILGNAKPNDEALKSPERRRWCEGFDWTPDFVDSDVEEDIRSGTEALHE 186
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86.20016.1 vs. uniprot
Match: A0A835ZEL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEL2_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.770e-35
Identity = 108/233 (46.35%), Postives = 144/233 (61.80%), Query Frame = 3 
Query:  876 TGEYDLEVMQWLELPNMGIRRIENISSCTSIRTLTLCGNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------RNVSKLPHLRRFFLQDYKGLKSNPACQHPSYHSVVTRFLPQLDVLDGESLNLRKCMVDVILENAKPSDEALKPPERRRWCEGFDWTPDFLDSDVEEDIRSGTEALHDVLQECARLNRRARDVLQAM 1526
            TGEYDLE++QWL+L N GIR+IE +S+C S+  L L GN+XXXXXXXXXXXXXXXXXXXXXX                      XXXXXXX                R++S+L +L+ F+L+DY G  +NPAC HP+YH VVT+ L  L++LDGESLNLR+CM DVIL+  +   EA KP   +RWC   DW    +++ V++ ++     L + L+ CA  +R A  +L+ M
Sbjct:   40 TGEYDLEMVQWLDLSNRGIRKIECLSNCISMIDLCLSGNRXXXXXXXXXXXXXXXXXXXXXXISRIGKCKKFWMLRIVCCANAGXXXXXXXXXXXXXXXXXXNVDDVRSLSQLSNLKHFYLKDYSGDNANPACNHPAYHIVVTKCLKHLEILDGESLNLRQCMADVILDRVQADPEAAKPLPHQRWCAAADWALPSVEATVDDALQDSIGGLQEALKSCAEASREADRLLRQM 272
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86.20016.1 vs. uniprot
Match: A0A6H5JTE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTE0_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 4.920e-26
Identity = 111/117 (94.87%), Postives = 113/117 (96.58%), Query Frame = 3 
Query:  870 QKTGEYDLEVMQWLELPNMGIRRIENISSCTSIRTLTLCGNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNVSKLPHLRRFFLQDYKGLKSNP 1220
            +KTGEYDLEVMQWLELPNMGIRRIENISSCT+IRTLTLCGNQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  NVSKLPHLRRFFLQDY GLKSNP
Sbjct:   16 KKTGEYDLEVMQWLELPNMGIRRIENISSCTNIRTLTLCGNQIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGNVSKLPHLRRFFLQDYNGLKSNP 132
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86.20016.1 vs. uniprot
Match: A0A7S3YG13_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG13_HETAK)

HSP 1 Score: 101 bits (251), Expect = 2.130e-20
Identity = 109/177 (61.58%), Postives = 131/177 (74.01%), Query Frame = 3 
Query:  876 TGEYDLEVMQWLELPNMGIRRIENISSCTSIRTLTLCGNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNVSKLPHLRRFFLQDYKGLKSNPACQHPSYHSVVTRFLPQLDVLDGESLNLRKCMVD--VILENAKPSDEALKPPERRRWCEGFD 1400
            TGEYDLEV+QWL L   GIR +EN+ SCT+++        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     LP L+ F+L++Y G K NPAC HPSY ++V R+L  + VLDGES +L+K M D   +LE+ +P D+A + P   RW +  D
Sbjct:   71 TGEYDLEVVQWLNLSGNGIRVMENLLSCTNLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKLKHFYLKNYDGSKKNPACDHPSYMTIVLRYLRHITVLDGESTHLQKYMADWEKMLESLRPDDDANRTPPVERWFDEVD 247
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86.20016.1 vs. uniprot
Match: A0A7S0PYB6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PYB6_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 3.600e-7
Identity = 78/148 (52.70%), Postives = 97/148 (65.54%), Query Frame = 3 
Query:  876 TGEYDLEVMQWLELPNMGIRRIENISSCTSIRTLTLCGNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNVSKLPHLRRFFLQD-YKGL----KSNPACQHPSYHSVVTRFLPQLDVLDGESLNL 1304
            +G++DL+ +  L +  MG+R IEN+SSC ++ +L L  N+              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   S+LP LR   LQ  Y G+    ++NP C HP+Y + V R LP L  LDGE  +L
Sbjct:   20 SGQFDLDAVFTLTMARMGLRTIENLSSCPNLTSLDLSHNRIQHIDALDFLKALKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQLPGLRTLHLQTVYDGVVDPDETNPMCSHPAYRTTVRRMLPSLKCLDGEWFDL 167
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86.20016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FQU0_ECTSI3.980e-6859.07Similar to Leucine rich repeat containing 61 n=1 T... [more]
A0A835ZEL2_9STRA1.770e-3546.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JTE0_9PHAE4.920e-2694.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3YG13_HETAK2.130e-2061.58Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0PYB6_9EUKA3.600e-752.70Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86contigEcto-sp13_S_contig86:4562..9540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop1
Start1
Seed ortholog score63.5
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog48698.ENSPFOP00000004765
Preferred nameLRRC61
Model size1789
Hectar predicted targeting categoryother localisation
Exons10
EggNOG free text desc.Leucine rich repeat containing 61
EggNOG OGs39V3J@33154,3BBRK@33208,3CZFN@33213,48CQI@7711,494BK@7742,49W0S@7898,COG4886@1,KOG0531@2759
Cds size801
COG Functional cat.T
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86.20016.1prot_Ecto-sp13_S_contig86.20016.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86 4822..8812 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464131.364289-UTR-Ecto-sp13_S_contig86:4561..48211681464131.364289-UTR-Ecto-sp13_S_contig86:4561..4821Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig86 4562..4821 -
1681464131.488619-UTR-Ecto-sp13_S_contig86:8812..95401681464131.488619-UTR-Ecto-sp13_S_contig86:8812..9540Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig86 8813..9540 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464131.3761268-CDS-Ecto-sp13_S_contig86:4821..48831681464131.3761268-CDS-Ecto-sp13_S_contig86:4821..4883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 4822..4883 -
1681464131.3880773-CDS-Ecto-sp13_S_contig86:5195..52701681464131.3880773-CDS-Ecto-sp13_S_contig86:5195..5270Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 5196..5270 -
1681464131.3980944-CDS-Ecto-sp13_S_contig86:5647..57291681464131.3980944-CDS-Ecto-sp13_S_contig86:5647..5729Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 5648..5729 -
1681464131.4071736-CDS-Ecto-sp13_S_contig86:6054..61431681464131.4071736-CDS-Ecto-sp13_S_contig86:6054..6143Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 6055..6143 -
1681464131.4174647-CDS-Ecto-sp13_S_contig86:6265..63231681464131.4174647-CDS-Ecto-sp13_S_contig86:6265..6323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 6266..6323 -
1681464131.4298859-CDS-Ecto-sp13_S_contig86:7313..73581681464131.4298859-CDS-Ecto-sp13_S_contig86:7313..7358Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 7314..7358 -
1681464131.4389303-CDS-Ecto-sp13_S_contig86:7607..76511681464131.4389303-CDS-Ecto-sp13_S_contig86:7607..7651Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 7608..7651 -
1681464131.447977-CDS-Ecto-sp13_S_contig86:8012..80911681464131.447977-CDS-Ecto-sp13_S_contig86:8012..8091Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 8013..8091 -
1681464131.4594512-CDS-Ecto-sp13_S_contig86:8301..83691681464131.4594512-CDS-Ecto-sp13_S_contig86:8301..8369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 8302..8369 -
1681464131.4769151-CDS-Ecto-sp13_S_contig86:8613..88121681464131.4769151-CDS-Ecto-sp13_S_contig86:8613..8812Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 8614..8812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86.20016.1

>prot_Ecto-sp13_S_contig86.20016.1 ID=prot_Ecto-sp13_S_contig86.20016.1|Name=mRNA_Ecto-sp13_S_contig86.20016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=267bp
MQTEISLPTSTFYVNSGSRLAYSRVHVVGLLVIGFMHTLHARVRACVQKT
GEYDLEVMQWLELPNMGIRRIENISSCTSIRTLTLCGNQIREIAGLDGLV
SLERLDLSSNKIRRIGNLESLTSLQSLDLKDNQISSVEDVRNVSKLPHLR
RFFLQDYKGLKSNPACQHPSYHSVVTRFLPQLDVLDGESLNLRKCMVDVI
LENAKPSDEALKPPERRRWCEGFDWTPDFLDSDVEEDIRSGTEALHDVLQ
ECARLNRRARDVLQAM*
back to top

mRNA from alignment at Ecto-sp13_S_contig86:4562..9540-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86.20016.1 ID=mRNA_Ecto-sp13_S_contig86.20016.1|Name=mRNA_Ecto-sp13_S_contig86.20016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4979bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86:4562..9540- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTGAGTCCATTTTATTTTCGTATACCTTTTTTGGGTAAGCTAGCCTGT
GACCACGGGAATCGACCCCATCAAGTATAGTACGGACAGAAGAAGGTACC
GGGCAGAGCGAATGGAACGGTTTTTAATGTGAAGACAACAACAACGACAA
CAACAACACCAACAACAACTGTAGAACAGTAGTCTCTACCTAGAACTATG
TGGGCGAGGTGGACTACAGTAAACAGGCAGTCTTGTATTTATGCCTGCAT
GCGACAAAATATGTAGACTCCACGTAAATACATGTGGTACGAGACACAGC
GAGATACTTTTGGGACTTGTTATGCATAGTGCATCATCAGTGCCGGCCCA
CTCATCAGAAACGTCGACATTAAGCCGAAGGCTCCTGCGTGTCAACGATT
GAGAACGGGCTACATTTTCTATGCTATGTGTACCATATTGGATTTCTTTT
GTAGTGCCGGCGGCTGTGCCTTCGCAATATTGTCTATTTCTTCACAAAGA
ACACACGGGTGTCTGTCGACGTTTGTTTCTTGTAAGTAGGCCGGCATTTC
ATCTAGTGGGTCGAGAACGGCAAAATGGTAGTTACCGGCCAGCAACAAGC
ATTCCGTGTGCTCATGCTTTGTTGATTATCGTCGAGCTACCTCGTGTCGC
GTATATCAGTTTTACTTTGAACGACAAGGACGGATTCTGCAAAGTTTGAA
GTGCGACTGCAACACAATTCCAGGTACAATGCAAACTGAAATATCCCTTC
CAACCTCGACATTCTACGTAAATTCAGGCAGTAGGCTAGCCTATTCCCGT
GTACACGTAGTCGGCTTGCTCGTAATCGGCTTCATGCATACATTGCATGC
GCGCGTGCGTGCGTGCGTGCAGAAAACGGGAGAGTACGACCTGGAGGTGA
TGCAATGGCTTGAACTACCAAACATGGGTGCGTTGAACGCGAAACACCCT
TTTGAAGTGATGCATCATGCGACCAGTGTTAGTTTGTTCCGATCTGGCCA
CATGGTGAGACAAAGAAGGTTCTTGCCGGCTGGGCGTAGATACTATCATA
GTGTGGAAGTAAATGGTACACGAGAGTATCTTCAACCGCATGATTAATAA
ATTGGTACTCCAATGAACATACATACATATATAAATACAGTACCTCGTCG
TAATTCCCTGGTATCTCGCAGGAATCAGACGCATCGAGAACATCAGCAGC
TGCACCAGCATTCGGACGCTCACCCTGTGCGGCAATCAGGTAGTGCGTAC
CCTTTTCCGAGGACCACATTGTACAAACAAGTTAGATGTTGGTATGATGT
GGATCGTCTCATTGCCAGTGGTGCGTCGACAAGGGAAGGCCTCAAATGAC
GTATGAGCATACATACAAATTGTCTCCGCTATCGGGCCTTAAACGTAATT
CAATTAACCTTCGTTTGGTAACGCCAACCGTTTCGGAAACCTTGACTAGA
TTCGAGAAATTGCCGGTCTGGACGGACTGGTATCTCTGGAGCGTTTGGAC
CTCTCCTCGAACAAGATTCGACGGATAGGTGATGAGGTTTTTGTCGTCAA
CGGGTCTATCGGGATACTTGCCGGATCTTGGGAGCTGTTTCGTCTCAAAC
GTTCGAACACCGATATACGCAAGCAACCGTACTTTCACAAACCTTGTCAA
CACGCATTTTGTACAAGTACAACGTAGTAGACCCGTTCCCATTTGCTTCT
TGCATTTTTCGTTACCCGCAGACAGTTGTCACAAACATAATCACACCAAC
AACGCCGACGCCATCATGTACAAGTTGTTTCTCTCCATGGTTGGCTTGTG
CTTCAGCAAGAATCTGAAATATCGCAACTGTTGTCATTCAAGCGACCCAA
ACACCGTACTTCACGTTCGTGCGTGGCTGCTTTTCCCAGGAAACCTGGAA
TCCCTCACAAGCTTACAGTCGTTGGATCTCAAGGTCAGTCGTCTGTCTGT
GCGATCGCTTGCATTTGCCTGAGGTTTGTATCCAATTGTGCCATGGGTCA
GCCGTGTGTTGCGCGGGGCCTGTTCATGTACGTACCTCGTACGAGGATGC
GGTACTCGGTCCCCTCTTAGAGGCACTCGCATAGTAGTTGTATATCTTTT
GTGTCACTCTCGTCAACCACGGGTATCAAGCACCTGAACCCGTCTGTTGT
GCGACGCCTGTGTGATCACCGACGGCCACTAGGATAACCAAATATCGAGC
GTGGAAGATGTCAGGAATGTCAGCAAGGTGAGATACATGCAGTTGAACTG
AGATATCCATCAAAACAAATACCTGTTCACGCCAGATCCTGCCACTTTGC
ATCAACATCGGGCTGTCCAATGGCATGGTTGTGATACTGATGTTGTTGTT
CTCATCCTTGTGCTGTGCACGCTTTCATGAGGTCGTCCATGAGGTCGTCC
ATGAAGTCGTGCGTTAAGAAGGTGCTTCTTAGCTTCAATTCTACATGTAA
TCTTACCTTGAATTCTACATGCAATGTAATGTTCTCCTAAAGCAGTAGGA
ATCCACATTTCTTGGCACACAAACCTTTTGTTTTTTTCTTTCGAATTGCC
TCCATGATTATTTCATGATTATTGTTGTACACCCGAGGGAAGAGAGAGAC
GACAACTTGGCAGAGCACGTCCCCCCTGCAGACATGTATCTTCGCCTTTC
TTTCCTCCTGAAACTTCTTCTCTCTCCCTTTCGTCCAAGTTTCTCGGTGT
AAGAACTAATATTTCTGCACGCAGTAGCCTCAGATGACCAAGTCCCCCAA
ATAGTACCCTACCATTTTCTTCACTACCACGACTACTCGGTCCGTTCCTC
CCCCCCTACCTTCGAAAGCAAAGGGGTGGGTGGACGGAAAAAGACTACAA
CTTATTTGCAGCTCCAGCTGGCAAGCCACGCAAAGCCTTCTTTGTGTCCA
CTGGCTCCTTGTCTCTACGTTGCTCTCTCTAGTCCTCGTAAGACTCTCTG
TGTGTGAACACCTACAAGTAGCTTCGGGAGAGTGTTCGAGGTGCAGCTTC
TCCCGTTCTGTCGCTCTCGGTCGGGGGGGCCGTACTTCTGTGACCATTCT
AATAATACCGTAACAACGACAAAACAATTCGATTGATTTGAAAACTTGAC
TTGTTGTCGCCTGGTTCAACAACAAATCTCCACGTTTTTTTCCAAACAGT
GTGGCTAACTTACTCTCCTCCGCGACACGCTGCACTTGATGACCTGCATG
AATACTCGCGACACCAGCTCCCACACCTGAGGCGTTTCTTCCTTCAGGAC
TACAAAGGCCTTAAAAGCAATCCAGGTGCGTCCGGCAGTAGTTCCCTAGC
AGGGGGCTTCCGCACAAAACTAGGTTTCCTCCCAGAAGGCCAAACCTGAG
ACAAAATGTTCCACCAGTTGCTAACACAGGATTTTTTGCCCTCGCAGCGT
GCCAGCATCCTTCCTACCATAGCGTGGTTACCCGTTTTCTGCCTCAACTG
GACGTTCTGGACGGTGAAAGTCTCAACCTAAGAAAGGTCAGTGTAGGTTG
TTGGCGATGGCAACGGAATACGCGGCTCTGCGGACAGACCAACAATCGTC
TCATGGAAAATGATCCGTCATACAGAGACAATATTTGTTATGCATTTTGC
GATCGGTAGCCTTGTAGCAATGCGTTTTACGTGGGCGTCAGGTGGGACCG
GGTGGCTGTCTCGCTATGCACTACGTAGTATCGTTCAGTTTGCGGCTTTT
TGTAGGCATGGTTGCCTTGTTTTTGACGGCAAACGCCAGCTGAGGGATGC
GTACACGAACTGGTTTGTCTGCAGTAACCTCTGACGCGATTTCTCTCCGT
GCGTTTGGCAGTGCATGGTGGACGTGATCCTTGAAAATGCAAAGCCAAGC
GATGAAGCTCTAAAACCTCCTGAGCGTCGACGGTGGTGCGAAGGCAAGCG
ATTATTAGTTCTCAGAGCTTGAATCGACCTTGGCGTCTACCAGACTCGAC
AGGAACGCCCCTGGATTGGGCCAAGTACTCGTATATTTACTGTAGTTTAT
TAACACCTGGGACTATATGACCTACACTGACTTACCCCTTCCACAAGTGG
CGAGCACAATACAGTTCGTGTTGAAAACGAAATGGGACTACCCCGCTTCA
ACTTTCCTGTCAGCCTGGGCAGCCAGTCACTTGTCTCAAATCAAAATAAG
CGACATATCGGCTGCGGTGTGTCTACTCAACTTCATCCGGGATAGCCCAC
ATCAGCTATAACAAGGAGGAAGGCCGGCGGTCTCGTGCTTTTGTGTACCA
ACACGTTTGTTGTGGCGCAGGATTTGACTGGACACCCGACTTTCTGGACT
CTGATGTCGAGGAGGACATTCGCAGTGGAACGGAAGCACTTCATGGTGAG
CATATCCGACCACCTATCGAACCGTTATTCCAGCAGTTTAGGTTCAACTC
TGCCGAACCCTACGACGCTCCTGTCGTCACGCCGTTGATGGAGGGAGTAT
CTCAGTATGTCGTCAAGTGTTGAATGAACCTATGCATCGTCGACTGACCT
AGCAGCTTCACGAAACCACAGTCGCCTCACGGCATTCGACACGAGTTGAG
GCTCGCGTTTGGCGTCGATTGTAGCACAAAACATTCAACAACATGTGTCG
GCAACAAGAGGTTTACACGACTTTGCACCTCTCCCCTGCCTCTCGTCACA
TGGACAGATGTATTGCAAGAATGTGCAAGATTGAACCGGCGAGCCAGGGA
CGTTCTCCAAGCTATGTAGTACTGAGTTATCGTTCCAGCCACGGCTGTGC
AATACTGCTGCCGGTTCTCGTGCCTATCACGAGTTATCCAGGCACTATCA
AACACGCTAACCTCGAAATAGGCGTGTCTTGCCTTTTTGAGTTTAGATAC
TCCAGTATCCTGTAAGCACGTCGATTTCGAGTCTACATGACACTAAATGT
ACGGAGAGGTGAAAAAGAGTCCTGGAGGATCGGAAACCAAGTTGTTTCGC
ATACATGAAGTTCATACGCCCCCGCCAAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86:4562..9540-

>mRNA_Ecto-sp13_S_contig86.20016.1 ID=mRNA_Ecto-sp13_S_contig86.20016.1|Name=mRNA_Ecto-sp13_S_contig86.20016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=801bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86:4562..9540- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAACTGAAATATCCCTTCCAACCTCGACATTCTACGTAAATTCAGG
CAGTAGGCTAGCCTATTCCCGTGTACACGTAGTCGGCTTGCTCGTAATCG
GCTTCATGCATACATTGCATGCGCGCGTGCGTGCGTGCGTGCAGAAAACG
GGAGAGTACGACCTGGAGGTGATGCAATGGCTTGAACTACCAAACATGGG
AATCAGACGCATCGAGAACATCAGCAGCTGCACCAGCATTCGGACGCTCA
CCCTGTGCGGCAATCAGATTCGAGAAATTGCCGGTCTGGACGGACTGGTA
TCTCTGGAGCGTTTGGACCTCTCCTCGAACAAGATTCGACGGATAGGAAA
CCTGGAATCCCTCACAAGCTTACAGTCGTTGGATCTCAAGGATAACCAAA
TATCGAGCGTGGAAGATGTCAGGAATGTCAGCAAGCTCCCACACCTGAGG
CGTTTCTTCCTTCAGGACTACAAAGGCCTTAAAAGCAATCCAGCGTGCCA
GCATCCTTCCTACCATAGCGTGGTTACCCGTTTTCTGCCTCAACTGGACG
TTCTGGACGGTGAAAGTCTCAACCTAAGAAAGTGCATGGTGGACGTGATC
CTTGAAAATGCAAAGCCAAGCGATGAAGCTCTAAAACCTCCTGAGCGTCG
ACGGTGGTGCGAAGGATTTGACTGGACACCCGACTTTCTGGACTCTGATG
TCGAGGAGGACATTCGCAGTGGAACGGAAGCACTTCATGATGTATTGCAA
GAATGTGCAAGATTGAACCGGCGAGCCAGGGACGTTCTCCAAGCTATGTA
G
back to top