prot_Ecto-sp13_S_contig82716.19618.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig82716.19618.1
Unique Nameprot_Ecto-sp13_S_contig82716.19618.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length60
Homology
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BLAST of mRNA_Ecto-sp13_S_contig82716.19618.1 vs. uniprot
Match: D8LII5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LII5_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.500e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0 
Query:    7 GTLDPLFALRNIEVIDLSSNVLSGSIAEAIGSLSMLKQLF 46
            GTLDPLFALRNIE+IDLSSNVLSGSIAEAIGSLS LKQLF
Sbjct:    8 GTLDPLFALRNIEIIDLSSNVLSGSIAEAIGSLSTLKQLF 47
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig82716.19618.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LII5_ECTSI2.500e-1495.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 4..59
e-value: 4.6E-11
score: 44.6
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 14..52
e-value: 2.3E-6
score: 27.2
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 12..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig82716contigEcto-sp13_S_contig82716:122..301 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig82716.19618.1mRNA_Ecto-sp13_S_contig82716.19618.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig82716 122..301 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig82716.19618.1 ID=prot_Ecto-sp13_S_contig82716.19618.1|Name=mRNA_Ecto-sp13_S_contig82716.19618.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
HCAIAPGTLDPLFALRNIEVIDLSSNVLSGSIAEAIGSLSMLKQLFLSEN
RLTGNFDKD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt