mRNA_Ecto-sp13_S_contig82716.19618.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig82716.19618.1
Unique NamemRNA_Ecto-sp13_S_contig82716.19618.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig82716.19618.1 vs. uniprot
Match: D8LII5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LII5_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.500e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:   19 GTLDPLFALRNIEVIDLSSNVLSGSIAEAIGSLSMLKQLF 138
            GTLDPLFALRNIE+IDLSSNVLSGSIAEAIGSLS LKQLF
Sbjct:    8 GTLDPLFALRNIEIIDLSSNVLSGSIAEAIGSLSTLKQLF 47
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig82716.19618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LII5_ECTSI2.500e-1495.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig82716contigEcto-sp13_S_contig82716:122..301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score73.9
Seed ortholog evalue2.8e-11
Seed eggNOG ortholog2880.D8LII5
Preferred nameFLRT1
Model size180
KEGG koko:K16362
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0001932,GO:0001933,GO:0003674,GO:0004857,GO:0004860,GO:0005102,GO:0005104,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005887,GO:0005911,GO:0006469,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007399,GO:0008150,GO:0008543,GO:0009653,GO:0009719,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016358,GO:0019207,GO:0019210,GO:0019220,GO:0019221,GO:0019222,GO:0019887,GO:0022008,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030054,GO:0030154,GO:0030182,GO:0030234,GO:0030674,GO:0031012,GO:0031175,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031410,GO:0031982,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032809,GO:0032989,GO:0032990,GO:0033673,GO:0034097,GO:0036477,GO:0040007,GO:0042221,GO:0042325,GO:0042326,GO:0042995,GO:0043005,GO:0043025,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043549,GO:0044087,GO:0044089,GO:0044092,GO:0044297,GO:0044298,GO:0044306,GO:0044344,GO:0044421,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044463,GO:0044464,GO:0045859,GO:0045936,GO:0046425,GO:0046426,GO:0048468,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048588,GO:0048589,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051716,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0060090,GO:0060255,GO:0060560,GO:0065007,GO:0065008,GO:0065009,GO:0070848,GO:0070851,GO:0070887,GO:0071310,GO:0071345,GO:0071363,GO:0071495,GO:0071774,GO:0071840,GO:0071944,GO:0080090,GO:0097458,GO:0097708,GO:0098772,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:1902531,GO:1902532,GO:1904892,GO:1904893,GO:1990138,GO:2000026
Exons1
EggNOG free text desc.fibroblast growth factor receptor binding
EggNOG OGs2QWDS@2759,COG4886@1
Cds size180
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464096.705398-CDS-Ecto-sp13_S_contig82716:121..3011681464096.705398-CDS-Ecto-sp13_S_contig82716:121..301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82716 122..301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig82716.19618.1prot_Ecto-sp13_S_contig82716.19618.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig82716 122..301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig82716.19618.1

>prot_Ecto-sp13_S_contig82716.19618.1 ID=prot_Ecto-sp13_S_contig82716.19618.1|Name=mRNA_Ecto-sp13_S_contig82716.19618.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
HCAIAPGTLDPLFALRNIEVIDLSSNVLSGSIAEAIGSLSMLKQLFLSEN
RLTGNFDKD*
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mRNA from alignment at Ecto-sp13_S_contig82716:122..301+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig82716.19618.1 ID=mRNA_Ecto-sp13_S_contig82716.19618.1|Name=mRNA_Ecto-sp13_S_contig82716.19618.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82716:122..301+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATTGCGCGATTGCACCAGGAACGCTGGACCCACTTTTCGCCTTGAGGAA
CATCGAGGTCATAGACCTCTCGTCGAATGTCCTGTCCGGAAGCATTGCCG
AAGCGATTGGATCACTCTCAATGTTGAAGCAACTGTTCTTGAGCGAAAAT
CGATTAACAGGTAATTTTGACAAAGATTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig82716:122..301+

>mRNA_Ecto-sp13_S_contig82716.19618.1 ID=mRNA_Ecto-sp13_S_contig82716.19618.1|Name=mRNA_Ecto-sp13_S_contig82716.19618.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82716:122..301+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATTGCGCGATTGCACCAGGAACGCTGGACCCACTTTTCGCCTTGAGGAA
CATCGAGGTCATAGACCTCTCGTCGAATGTCCTGTCCGGAAGCATTGCCG
AAGCGATTGGATCACTCTCAATGTTGAAGCAACTGTTCTTGAGCGAAAAT
CGATTAACAGGTAATTTTGACAAAGATTAA
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