prot_Ecto-sp13_S_contig8179.19527.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8179.19527.1
Unique Nameprot_Ecto-sp13_S_contig8179.19527.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length136
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8179.19527.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 72..105
e-value: 0.15
score: 21.2
coord: 30..63
e-value: 0.0092
score: 25.2
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 72..105
score: 7.375
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 30..63
score: 8.172
NoneNo IPR availablePFAMPF13374TPR_10coord: 1..28
e-value: 8.2E-4
score: 19.2
NoneNo IPR availablePFAMPF13424TPR_12coord: 31..103
e-value: 1.4E-22
score: 79.7
NoneNo IPR availablePANTHERPTHR45783FAMILY NOT NAMEDcoord: 1..118
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..134
e-value: 4.5E-44
score: 152.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 1..129
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..105
score: 14.145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8179contigEcto-sp13_S_contig8179:259..1073 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8179.19527.1mRNA_Ecto-sp13_S_contig8179.19527.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8179 259..1073 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8179.19527.1 ID=prot_Ecto-sp13_S_contig8179.19527.1|Name=mRNA_Ecto-sp13_S_contig8179.19527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
QGKHEKAKPLLERSVAINEATFGLEHPHVVASLNDLAAILEKQGKYAEAQ
PLYERSLAINEKTHGPDHQDVATSLNNLAVLVCEQGNYVEARRHLERALQ
IRTSVLGGMDPDTIEIRDTLEFVRDQVGENRADTA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom