mRNA_Ecto-sp13_S_contig8179.19527.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8179.19527.1
Unique NamemRNA_Ecto-sp13_S_contig8179.19527.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8179.19527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8179contigEcto-sp13_S_contig8179:259..1073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size408
Hectar predicted targeting categoryother localisation
Exons3
Cds size408
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464089.576089-CDS-Ecto-sp13_S_contig8179:258..3871681464089.576089-CDS-Ecto-sp13_S_contig8179:258..387Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8179 259..387 +
1681464089.5881703-CDS-Ecto-sp13_S_contig8179:656..7821681464089.5881703-CDS-Ecto-sp13_S_contig8179:656..782Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8179 657..782 +
1681464089.5990274-CDS-Ecto-sp13_S_contig8179:920..10731681464089.5990274-CDS-Ecto-sp13_S_contig8179:920..1073Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8179 921..1073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8179.19527.1prot_Ecto-sp13_S_contig8179.19527.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8179 259..1073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8179.19527.1

>prot_Ecto-sp13_S_contig8179.19527.1 ID=prot_Ecto-sp13_S_contig8179.19527.1|Name=mRNA_Ecto-sp13_S_contig8179.19527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
QGKHEKAKPLLERSVAINEATFGLEHPHVVASLNDLAAILEKQGKYAEAQ
PLYERSLAINEKTHGPDHQDVATSLNNLAVLVCEQGNYVEARRHLERALQ
IRTSVLGGMDPDTIEIRDTLEFVRDQVGENRADTA*
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mRNA from alignment at Ecto-sp13_S_contig8179:259..1073+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8179.19527.1 ID=mRNA_Ecto-sp13_S_contig8179.19527.1|Name=mRNA_Ecto-sp13_S_contig8179.19527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=815bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8179:259..1073+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGCAAACATGAGAAGGCCAAGCCCCTGTTGGAGCGCTCGGTGGCGAT
CAACGAGGCTACCTTTGGCTTGGAGCATCCCCATGTCGTTGCATCCCTCA
ACGATTTGGCTGCGATCTTGGAGAAGCAAGTGGGTGTTTTTCCTAGACGT
CGTCGTGACTCAAACAGTTGTTTCCAGGTAAACGGGATGGTACTGTAGCG
CCCTCGTTGTGCCTAAGTATCATGGTGCGACAGTTTGTGGGGCTGTGTTG
GATTTGTTGGATTTCGCCAACCCTCGAGTGCTCGTCCTACCCTTTCGTGA
CGGTTTGGTAATACGCACAGTTCAAGACTATTCTCTTGATTGGTTGTACC
CCAATTGAACGATTATCGCTCGGCATTTGCATTACGCCCCCTCCTTAGGG
CAAGTACGCTGAGGCGCAACCCCTCTACGAGCGCTCGCTTGCCATCAACG
AGAAGACGCACGGTCCTGACCACCAGGACGTTGCAACGTCGCTCAACAAC
TTGGCTGTGCTAGTCTGCGAGCAGGTGAGGGCTTGAACTACAAATGTAAA
TGAGATTCACAGGCTTTTGCGTCTTTTTCTTTTGCTTCCGATGTTGTTCA
ACCGGTACTCTGGAGTTGAGGATTTAACATTACCAGCCCGAAATCGTTGC
CGCCGCCTTCAGGGAAACTACGTCGAGGCTCGTCGCCACTTGGAAAGAGC
TTTGCAGATCAGGACTAGCGTCCTCGGGGGAATGGATCCAGATACTATCG
AGATCCGAGACACCCTAGAGTTCGTACGAGACCAGGTTGGTGAAAACAGA
GCCGACACGGCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8179:259..1073+

>mRNA_Ecto-sp13_S_contig8179.19527.1 ID=mRNA_Ecto-sp13_S_contig8179.19527.1|Name=mRNA_Ecto-sp13_S_contig8179.19527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8179:259..1073+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGCAAACATGAGAAGGCCAAGCCCCTGTTGGAGCGCTCGGTGGCGAT
CAACGAGGCTACCTTTGGCTTGGAGCATCCCCATGTCGTTGCATCCCTCA
ACGATTTGGCTGCGATCTTGGAGAAGCAAGGCAAGTACGCTGAGGCGCAA
CCCCTCTACGAGCGCTCGCTTGCCATCAACGAGAAGACGCACGGTCCTGA
CCACCAGGACGTTGCAACGTCGCTCAACAACTTGGCTGTGCTAGTCTGCG
AGCAGGGAAACTACGTCGAGGCTCGTCGCCACTTGGAAAGAGCTTTGCAG
ATCAGGACTAGCGTCCTCGGGGGAATGGATCCAGATACTATCGAGATCCG
AGACACCCTAGAGTTCGTACGAGACCAGGTTGGTGAAAACAGAGCCGACA
CGGCGTAG
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