prot_Ecto-sp13_S_contig8153.19496.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8153.19496.1
Unique Nameprot_Ecto-sp13_S_contig8153.19496.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length237
Homology
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: D8LS75_ECTSI (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS75_ECTSI)

HSP 1 Score: 460 bits (1184), Expect = 2.800e-160
Identity = 228/231 (98.70%), Postives = 231/231 (100.00%), Query Frame = 0
Query:    6 KALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIEVLPGRTHPLNNMSSCGGYVLTGIKITNNRDPRGVIPKARIPDMAKRHKKKRYKRT 236
            +ALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEK+LLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLP+LTPSRPFAIYSEFIEVLPGRTHPLNNMSSCGGYVLTGIKITNNRDPRGVIPKARIPDMAKRHKKKRYKRT
Sbjct:  226 QALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKNLLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPHLTPSRPFAIYSEFIEVLPGRTHPLNNMSSCGGYVLTGIKITNNRDPRGVIPKARIPDMAKRHKKKRYKRT 456          
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: A0A7S2RMG0_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMG0_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.390e-30
Identity = 80/238 (33.61%), Postives = 126/238 (52.94%), Query Frame = 0
Query:    6 KALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVP---EKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIE-----------------------------VLPGRTHPLNNMSSCGGYVLTGIKITNNRD 211
            + L +D+CMGVV A+++ER+G  GR    +A+S P++DAV KF+ + + +L  L+  HTSE G+L+ PE   +AD +D       R   ++LA    +          E+D+ A +  +  R+RR   +P P  +R+W+R   D L+IA  + P      ++ +L P+ PF ++SE+IE                             VLPGRTHP+  MS+C GY+LTGIK+   R+
Sbjct:   44 QILCMDSCMGVVAASIVERLGGYGRCLNAFAESNPNLDAVNKFNFSPR-MLSSLVSFHTSEFGKLATPELP-DAD-LDHSSEAVERKIRDSLATMPDLTKQKLQSLKTEEDKQAFLAAREKRIRRACAKPQPGVIRNWIRAQSDSLIIATAYHPKTVFFELVQWLKPACPFVVFSEYIEPLTEVFRAIQERGIGCKLQLSNSWLRPFQVLPGRTHPVMQMSACSGYILTGIKVLPRRE 278          
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: A0A0W8CAK1_PHYNI (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=14 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CAK1_PHYNI)

HSP 1 Score: 121 bits (303), Expect = 2.310e-28
Identity = 81/222 (36.49%), Postives = 111/222 (50.00%), Query Frame = 0
Query:    6 KALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHTSELGRLSIPESERE--ADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIE-------------------VLPGRTHPLNNMSSCGGYVLTGIKI 206
            + LV+DTCMG+VT A+ ER G  GRI   Y   QP+ D +R+F+  ++ L      +H     ++ + E E E   +P      G +  E E LA  R                 E+K  R +    R  P  +R+W R+  D LVIA  +DP   + A+LPYL  S+PF +YSEF+E                   VLPGRTHP  NMS+C GY+L+GIKI
Sbjct:  214 QVLVVDTCMGLVTGAIAERQGGSGRIICPYEGQQPAADILRRFNFDKRTLES----IHYMPFKQVRLLEMEEEDVVEPAKVARDGLTPEEREQLAAERAK----NFTPXXXXRYAEKKARREQTKLFRQKPSTIREWAREKSDSLVIAANYDPEEVLMALLPYLGRSKPFVVYSEFLEKMEAIIDLQLNETWTRENQVLPGRTHPEMNMSACSGYLLSGIKI 427          
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: W2PH38_PHYPN (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PH38_PHYPN)

HSP 1 Score: 117 bits (293), Expect = 3.450e-27
Identity = 81/232 (34.91%), Postives = 111/232 (47.84%), Query Frame = 0
Query:    6 KALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHTSELGRLSIPESERE--ADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIE-----------------------------VLPGRTHPLNNMSSCGGYVLTGIKI 206
            + LV+DTCMG+VT A+ ER G  GRI   Y   QP+ D +R+F+  ++ L      +H     ++ + E E E   +P      G +  E E LA  R                 E+K  R +    R  P  +R+W R+  D LVIA  +DP   + A+LPYL  S+PF +YSEF+E                             VLPGRTHP  NMS+C GY+L+GIKI
Sbjct:  156 QVLVVDTCMGLVTGAIAERQGGSGRIICPYEGQQPAADILRRFNFDKRTLES----IHYMPFKQVRLLEMEEEDVVEPAKVARDGLTPEEREQLAAERAK----NFTPXXXXRYAEKKARREQTKLFRQKPSTIREWAREKSDSLVIAASYDPEEVLMALLPYLGRSKPFVVYSEFLEPLTRTFATLQKMEAIIDLQLNETWTRENQVLPGRTHPEMNMSACSGYLLSGIKI 379          
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: A0A662WG54_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WG54_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.310e-26
Identity = 81/233 (34.76%), Postives = 110/233 (47.21%), Query Frame = 0
Query:    6 KALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHT---SELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIE-----------------------------VLPGRTHPLNNMSSCGGYVLTGIKI 206
            + LV+DTCMG+VT A+ ER G  GRI   Y   QP+ D +R+F+   +   + L  +H     E+  L +PE E   +P      G +  E E +A  R      G               R+ +   R     +R W+R+  D LVIA  +DP   + A+LPYL  S+PF IYSEF+E                             VLPGRTHP  NMS+C GY+L+GIKI
Sbjct:  148 QVLVVDTCMGLVTGAIAERQGGSGRILCPYDGQQPAADILRRFNFGTQCYKRTLESIHYMPFKEIRLLELPE-ETVVEPPKVARDGLTPEERERMATERAK----GFXXXXXXXXXXXXXRRLEKKIQRQPSATIRQWVRETSDSLVIAANYDPEQVLLALLPYLGRSKPFVIYSEFLEPLTRTFATLQKMEEVIDLQLNETWTRENQVLPGRTHPEMNMSACSGYLLSGIKI 375          
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: H3GKX8_PHYRM (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GKX8_PHYRM)

HSP 1 Score: 114 bits (285), Expect = 5.790e-26
Identity = 83/246 (33.74%), Postives = 117/246 (47.56%), Query Frame = 0
Query:    8 LVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIE-----------------------------VLPGRTHPLNNMSSCGGYVLTGIKITNNRDPRGVIPKARIPDM 224
            LV+DTCMG+V  A+ ER G  GRI   Y   QP+ D +R+F+  +K  ++ +  +   ++  L + E E   +P      G +  E E LAE R               +  R   ++    +R +P  +R W+R+  D LVIA  +DP   + AMLPYL  S+PF +YSEF+E                             VLPGRTHP  NMS+C GY+L+GIKI +   P G  P     D 
Sbjct:  176 LVVDTCMGLVAGAIAERQGGSGRIICPYEGQQPAADILRRFNF-DKRTVESIHYIPFKQVRLLELNE-EDVVEPQKVARDGLTPEERERLAEERAKTFTXXXXXXXXXXKARRDGTKV----NRQSPSTIRQWMREKSDSLVIAANYDPEEVLLAMLPYLARSKPFVVYSEFLEPLTRTFATLQKMEAVIDLQLNETWTRENQVLPGRTHPEMNMSACSGYLLSGIKILDIA-PLGASPSVSEQDQ 414          
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: A0A3M6VJP5_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJP5_9STRA)

HSP 1 Score: 114 bits (286), Expect = 6.070e-26
Identity = 85/231 (36.80%), Postives = 114/231 (49.35%), Query Frame = 0
Query:    6 KALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNK-HRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIE-----------------------------VLPGRTHPLNNMSSCGGYVLTGIKI 206
            + LV+DTCMG+V  A+ ER G  GRI   +   QP+ D +R+F+  +K  L+ +  +   ++  L + E E    P      G +  E E LA  R     +  PE+ +  R   K AR    K  R  P  VR W+R+  D LVIA  FDP   + A+LPYL  S+PF +YSEF+E                             VLPGRTHP  NMS+C GY+L GIKI
Sbjct:  208 QVLVVDTCMGLVAGAVAERQGGSGRIICPFDGQQPAADILRRFNF-DKRTLESIHYVPFKQVRLLELKEEEVVESPKI-ARDGLTLEERERLAAERAK---NFTPEQQK--RYAEKKARREETKIFRQKPSTVRQWIREKSDSLVIAANFDPEEVLMALLPYLGRSKPFVVYSEFLEPLTRTFARLQKMEAIIDLQLNETWTRENQVLPGRTHPEMNMSACSGYLLWGIKI 431          
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: A0A5D6XMH0_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMH0_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.550e-25
Identity = 82/231 (35.50%), Postives = 116/231 (50.22%), Query Frame = 0
Query:    6 KALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQV-RDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIE-----------------------------VLPGRTHPLNNMSSCGGYVLTGIKI 206
            + LV+DTCMG+V  A+ ER    GRI A Y   QPS+D +R+F+  +K   + +      ++  L++ E++    P+     G +  E EA    R      G    D+  R E K AR + NK +  P  V R+W+R   D LV+A  +DP   + A+LPYL  S+PF +YSE++E                             VLPGRTHP   MS+C GY+LTGIKI
Sbjct:  209 QVLVVDTCMGLVIGAIAERQAGHGRILAGYEGQQPSVDILRRFNF-DKRTHESIKYFSFKDVANLAVLETDVVEPPLAPPRDGLTPAEREAAMVARLA----GFTA-DQRKRYEAKKARNQVNKVKREPAAVVREWVRAKSDALVVASSYDPERVLLALLPYLACSKPFVVYSEYLEPLTRAFSTLHAISAVIDLQLSETWTREQQVLPGRTHPEMTMSACSGYLLTGIKI 433          
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: A0A225VLQ1_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VLQ1_9STRA)

HSP 1 Score: 112 bits (279), Expect = 5.510e-25
Identity = 85/234 (36.32%), Postives = 116/234 (49.57%), Query Frame = 0
Query:    6 KALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHTSELGRLSIPESEREADPVDD---GGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNK-HRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIE-----------------------------VLPGRTHPLNNMSSCGGYVLTGIKI 206
            + LV+DTCMG+V  ++ ER G  G I   Y   QP+ D +R+F+  +K L      +H     ++ + E E E D V+       G +  E E LA  R     +  PE+ R  R   K AR  + K +R  P  +R W R+  D LVIA  +DP   + A+LP+L  S+PF IYSEF+E                             VLPGRTHP  NMS+C GY+L+GIKI
Sbjct:  207 RVLVVDTCMGLVAGSIAERQGGSGCIICPYEGQQPAADILRRFNFDKKTLES----IHYMPFKQVRMLEMEEE-DVVEAPKVARDGLTPEERELLAAERAK---NFTPEQQR--RYAEKKARREQTKIYRQKPSTIRQWAREKSDSLVIAATYDPEEILMALLPFLGRSKPFVIYSEFLEPLTRTFATLQKMEAIIDLQLNETWTRENQVLPGRTHPEMNMSACSGYLLSGIKI 430          
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: M4C2Z9_HYAAE (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C2Z9_HYAAE)

HSP 1 Score: 112 bits (280), Expect = 5.640e-25
Identity = 81/230 (35.22%), Postives = 114/230 (49.57%), Query Frame = 0
Query:    6 KALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIE-----------------------------VLPGRTHPLNNMSSCGGYVLTGIKI 206
            + LV+DTCMG+VT A+ ER G  GR+   Y   QPS D +R+F+  +K  L+ +  L   ++  L + E E   +P      G S+ + E LA  R     +  PE+ +    ++K  R         P  +R W R+  D LVIA  ++P A + A+LPYL  S+PF +YSEF+E                             VLPGRTHP   MS+C GY+L GIKI
Sbjct:  209 QVLVVDTCMGLVTGAVAERQGGSGRLICPYEGQQPSADILRRFNF-DKLTLESIHYLPFKQVRLLGLKEEEV-LEPKKVARDGLSQEQRERLAAERAK---NFTPEQQKHY-ADKKARREETKLSHQKPSVIRQWAREKSDSLVIAANYNPEAILMALLPYLGRSKPFVVYSEFLEPLTRTFARLQKMESIIDLQLNETWTRENQVLPGRTHPEMTMSACSGYLLWGIKI 432          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS75_ECTSI2.800e-16098.70tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A7S2RMG0_9STRA3.390e-3033.61tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A0W8CAK1_PHYNI2.310e-2836.49tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
W2PH38_PHYPN3.450e-2734.91tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A662WG54_9STRA2.310e-2634.76tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
H3GKX8_PHYRM5.790e-2633.74tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A3M6VJP5_9STRA6.070e-2636.80tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A5D6XMH0_9STRA1.550e-2535.50tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A225VLQ1_9STRA5.510e-2536.32tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
M4C2Z9_HYAAE5.640e-2535.22tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017423tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6PFAMPF04189Gcd10pcoord: 6..75
e-value: 4.6E-11
score: 42.4
IPR017423tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6PANTHERPTHR12945TRANSLATION INITIATION FACTOR EIF3-RELATEDcoord: 182..209
IPR017423tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6PANTHERPTHR12945TRANSLATION INITIATION FACTOR EIF3-RELATEDcoord: 6..183
NoneNo IPR availablePANTHERPTHR12945:SF0TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT TRM6coord: 6..183
NoneNo IPR availablePANTHERPTHR12945:SF0TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT TRM6coord: 182..209
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.739

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8153contigEcto-sp13_S_contig8153:279..4331 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8153.19496.1mRNA_Ecto-sp13_S_contig8153.19496.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8153 279..4331 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8153.19496.1 ID=prot_Ecto-sp13_S_contig8153.19496.1|Name=mRNA_Ecto-sp13_S_contig8153.19496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=237bp
MSLCWKALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDH
AEKDLLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEY
RTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVI
ACKFDPIAAVDAMLPYLTPSRPFAIYSEFIEVLPGRTHPLNNMSSCGGYV
LTGIKITNNRDPRGVIPKARIPDMAKRHKKKRYKRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017423TRM6