mRNA_Ecto-sp13_S_contig8153.19496.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8153.19496.1
Unique NamemRNA_Ecto-sp13_S_contig8153.19496.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: D8LS75_ECTSI (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS75_ECTSI)

HSP 1 Score: 460 bits (1184), Expect = 2.800e-160
Identity = 228/231 (98.70%), Postives = 231/231 (100.00%), Query Frame = 1 
Query:   16 KALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIEVLPGRTHPLNNMSSCGGYVLTGIKITNNRDPRGVIPKARIPDMAKRHKKKRYKRT 708
            +ALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEK+LLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLP+LTPSRPFAIYSEFIEVLPGRTHPLNNMSSCGGYVLTGIKITNNRDPRGVIPKARIPDMAKRHKKKRYKRT
Sbjct:  226 QALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKNLLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPHLTPSRPFAIYSEFIEVLPGRTHPLNNMSSCGGYVLTGIKITNNRDPRGVIPKARIPDMAKRHKKKRYKRT 456
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: A0A7S2RMG0_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMG0_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.390e-30
Identity = 80/238 (33.61%), Postives = 126/238 (52.94%), Query Frame = 1 
Query:   16 KALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVP---EKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIE-----------------------------VLPGRTHPLNNMSSCGGYVLTGIKITNNRD 633
            + L +D+CMGVV A+++ER+G  GR    +A+S P++DAV KF+ + + +L  L+  HTSE G+L+ PE   +AD +D       R   ++LA    +          E+D+ A +  +  R+RR   +P P  +R+W+R   D L+IA  + P      ++ +L P+ PF ++SE+IE                             VLPGRTHP+  MS+C GY+LTGIK+   R+
Sbjct:   44 QILCMDSCMGVVAASIVERLGGYGRCLNAFAESNPNLDAVNKFNFSPR-MLSSLVSFHTSEFGKLATPELP-DAD-LDHSSEAVERKIRDSLATMPDLTKQKLQSLKTEEDKQAFLAAREKRIRRACAKPQPGVIRNWIRAQSDSLIIATAYHPKTVFFELVQWLKPACPFVVFSEYIEPLTEVFRAIQERGIGCKLQLSNSWLRPFQVLPGRTHPVMQMSACSGYILTGIKVLPRRE 278
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: A0A0W8CAK1_PHYNI (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=14 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CAK1_PHYNI)

HSP 1 Score: 121 bits (303), Expect = 2.310e-28
Identity = 81/222 (36.49%), Postives = 111/222 (50.00%), Query Frame = 1 
Query:   16 KALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHTSELGRLSIPESERE--ADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIE-------------------VLPGRTHPLNNMSSCGGYVLTGIKI 618
            + LV+DTCMG+VT A+ ER G  GRI   Y   QP+ D +R+F+  ++ L      +H     ++ + E E E   +P      G +  E E LA  R                 E+K  R +    R  P  +R+W R+  D LVIA  +DP   + A+LPYL  S+PF +YSEF+E                   VLPGRTHP  NMS+C GY+L+GIKI
Sbjct:  214 QVLVVDTCMGLVTGAIAERQGGSGRIICPYEGQQPAADILRRFNFDKRTLES----IHYMPFKQVRLLEMEEEDVVEPAKVARDGLTPEEREQLAAERAK----NFTPXXXXRYAEKKARREQTKLFRQKPSTIREWAREKSDSLVIAANYDPEEVLMALLPYLGRSKPFVVYSEFLEKMEAIIDLQLNETWTRENQVLPGRTHPEMNMSACSGYLLSGIKI 427
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: W2PH38_PHYPN (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PH38_PHYPN)

HSP 1 Score: 117 bits (293), Expect = 3.450e-27
Identity = 81/232 (34.91%), Postives = 111/232 (47.84%), Query Frame = 1 
Query:   16 KALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHTSELGRLSIPESERE--ADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIE-----------------------------VLPGRTHPLNNMSSCGGYVLTGIKI 618
            + LV+DTCMG+VT A+ ER G  GRI   Y   QP+ D +R+F+  ++ L      +H     ++ + E E E   +P      G +  E E LA  R                 E+K  R +    R  P  +R+W R+  D LVIA  +DP   + A+LPYL  S+PF +YSEF+E                             VLPGRTHP  NMS+C GY+L+GIKI
Sbjct:  156 QVLVVDTCMGLVTGAIAERQGGSGRIICPYEGQQPAADILRRFNFDKRTLES----IHYMPFKQVRLLEMEEEDVVEPAKVARDGLTPEEREQLAAERAK----NFTPXXXXRYAEKKARREQTKLFRQKPSTIREWAREKSDSLVIAASYDPEEVLMALLPYLGRSKPFVVYSEFLEPLTRTFATLQKMEAIIDLQLNETWTRENQVLPGRTHPEMNMSACSGYLLSGIKI 379
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: A0A662WG54_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WG54_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.310e-26
Identity = 81/233 (34.76%), Postives = 110/233 (47.21%), Query Frame = 1 
Query:   16 KALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHT---SELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIE-----------------------------VLPGRTHPLNNMSSCGGYVLTGIKI 618
            + LV+DTCMG+VT A+ ER G  GRI   Y   QP+ D +R+F+   +   + L  +H     E+  L +PE E   +P      G +  E E +A  R      G               R+ +   R     +R W+R+  D LVIA  +DP   + A+LPYL  S+PF IYSEF+E                             VLPGRTHP  NMS+C GY+L+GIKI
Sbjct:  148 QVLVVDTCMGLVTGAIAERQGGSGRILCPYDGQQPAADILRRFNFGTQCYKRTLESIHYMPFKEIRLLELPE-ETVVEPPKVARDGLTPEERERMATERAK----GFXXXXXXXXXXXXXRRLEKKIQRQPSATIRQWVRETSDSLVIAANYDPEQVLLALLPYLGRSKPFVIYSEFLEPLTRTFATLQKMEEVIDLQLNETWTRENQVLPGRTHPEMNMSACSGYLLSGIKI 375
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: H3GKX8_PHYRM (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GKX8_PHYRM)

HSP 1 Score: 114 bits (285), Expect = 5.790e-26
Identity = 83/246 (33.74%), Postives = 117/246 (47.56%), Query Frame = 1 
Query:   22 LVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIE-----------------------------VLPGRTHPLNNMSSCGGYVLTGIKITNNRDPRGVIPKARIPDM 672
            LV+DTCMG+V  A+ ER G  GRI   Y   QP+ D +R+F+  +K  ++ +  +   ++  L + E E   +P      G +  E E LAE R               +  R   ++    +R +P  +R W+R+  D LVIA  +DP   + AMLPYL  S+PF +YSEF+E                             VLPGRTHP  NMS+C GY+L+GIKI +   P G  P     D 
Sbjct:  176 LVVDTCMGLVAGAIAERQGGSGRIICPYEGQQPAADILRRFNF-DKRTVESIHYIPFKQVRLLELNE-EDVVEPQKVARDGLTPEERERLAEERAKTFTXXXXXXXXXXKARRDGTKV----NRQSPSTIRQWMREKSDSLVIAANYDPEEVLLAMLPYLARSKPFVVYSEFLEPLTRTFATLQKMEAVIDLQLNETWTRENQVLPGRTHPEMNMSACSGYLLSGIKILDIA-PLGASPSVSEQDQ 414
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: A0A3M6VJP5_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJP5_9STRA)

HSP 1 Score: 114 bits (286), Expect = 6.070e-26
Identity = 85/231 (36.80%), Postives = 114/231 (49.35%), Query Frame = 1 
Query:   16 KALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNK-HRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIE-----------------------------VLPGRTHPLNNMSSCGGYVLTGIKI 618
            + LV+DTCMG+V  A+ ER G  GRI   +   QP+ D +R+F+  +K  L+ +  +   ++  L + E E    P      G +  E E LA  R     +  PE+ +  R   K AR    K  R  P  VR W+R+  D LVIA  FDP   + A+LPYL  S+PF +YSEF+E                             VLPGRTHP  NMS+C GY+L GIKI
Sbjct:  208 QVLVVDTCMGLVAGAVAERQGGSGRIICPFDGQQPAADILRRFNF-DKRTLESIHYVPFKQVRLLELKEEEVVESPKI-ARDGLTLEERERLAAERAK---NFTPEQQK--RYAEKKARREETKIFRQKPSTVRQWIREKSDSLVIAANFDPEEVLMALLPYLGRSKPFVVYSEFLEPLTRTFARLQKMEAIIDLQLNETWTRENQVLPGRTHPEMNMSACSGYLLWGIKI 431
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: A0A5D6XMH0_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMH0_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.550e-25
Identity = 82/231 (35.50%), Postives = 116/231 (50.22%), Query Frame = 1 
Query:   16 KALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQV-RDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIE-----------------------------VLPGRTHPLNNMSSCGGYVLTGIKI 618
            + LV+DTCMG+V  A+ ER    GRI A Y   QPS+D +R+F+  +K   + +      ++  L++ E++    P+     G +  E EA    R      G    D+  R E K AR + NK +  P  V R+W+R   D LV+A  +DP   + A+LPYL  S+PF +YSE++E                             VLPGRTHP   MS+C GY+LTGIKI
Sbjct:  209 QVLVVDTCMGLVIGAIAERQAGHGRILAGYEGQQPSVDILRRFNF-DKRTHESIKYFSFKDVANLAVLETDVVEPPLAPPRDGLTPAEREAAMVARLA----GFTA-DQRKRYEAKKARNQVNKVKREPAAVVREWVRAKSDALVVASSYDPERVLLALLPYLACSKPFVVYSEYLEPLTRAFSTLHAISAVIDLQLSETWTREQQVLPGRTHPEMTMSACSGYLLTGIKI 433
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: A0A225VLQ1_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VLQ1_9STRA)

HSP 1 Score: 112 bits (279), Expect = 5.510e-25
Identity = 85/234 (36.32%), Postives = 116/234 (49.57%), Query Frame = 1 
Query:   16 KALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHTSELGRLSIPESEREADPVDD---GGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNK-HRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIE-----------------------------VLPGRTHPLNNMSSCGGYVLTGIKI 618
            + LV+DTCMG+V  ++ ER G  G I   Y   QP+ D +R+F+  +K L      +H     ++ + E E E D V+       G +  E E LA  R     +  PE+ R  R   K AR  + K +R  P  +R W R+  D LVIA  +DP   + A+LP+L  S+PF IYSEF+E                             VLPGRTHP  NMS+C GY+L+GIKI
Sbjct:  207 RVLVVDTCMGLVAGSIAERQGGSGCIICPYEGQQPAADILRRFNFDKKTLES----IHYMPFKQVRMLEMEEE-DVVEAPKVARDGLTPEERELLAAERAK---NFTPEQQR--RYAEKKARREQTKIYRQKPSTIRQWAREKSDSLVIAATYDPEEILMALLPFLGRSKPFVIYSEFLEPLTRTFATLQKMEAIIDLQLNETWTRENQVLPGRTHPEMNMSACSGYLLSGIKI 430
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Match: M4C2Z9_HYAAE (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C2Z9_HYAAE)

HSP 1 Score: 112 bits (280), Expect = 5.640e-25
Identity = 81/230 (35.22%), Postives = 114/230 (49.57%), Query Frame = 1 
Query:   16 KALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKDLLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPYLTPSRPFAIYSEFIE-----------------------------VLPGRTHPLNNMSSCGGYVLTGIKI 618
            + LV+DTCMG+VT A+ ER G  GR+   Y   QPS D +R+F+  +K  L+ +  L   ++  L + E E   +P      G S+ + E LA  R     +  PE+ +    ++K  R         P  +R W R+  D LVIA  ++P A + A+LPYL  S+PF +YSEF+E                             VLPGRTHP   MS+C GY+L GIKI
Sbjct:  209 QVLVVDTCMGLVTGAVAERQGGSGRLICPYEGQQPSADILRRFNF-DKLTLESIHYLPFKQVRLLGLKEEEV-LEPKKVARDGLSQEQRERLAAERAK---NFTPEQQKHY-ADKKARREETKLSHQKPSVIRQWAREKSDSLVIAANYNPEAILMALLPYLGRSKPFVVYSEFLEPLTRTFARLQKMESIIDLQLNETWTRENQVLPGRTHPEMTMSACSGYLLWGIKI 432
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8153.19496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS75_ECTSI2.800e-16098.70tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A7S2RMG0_9STRA3.390e-3033.61tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A0W8CAK1_PHYNI2.310e-2836.49tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
W2PH38_PHYPN3.450e-2734.91tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A662WG54_9STRA2.310e-2634.76tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
H3GKX8_PHYRM5.790e-2633.74tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A3M6VJP5_9STRA6.070e-2636.80tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A5D6XMH0_9STRA1.550e-2535.50tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A225VLQ1_9STRA5.510e-2536.32tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
M4C2Z9_HYAAE5.640e-2535.22tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8153contigEcto-sp13_S_contig8153:279..4331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score464.5
Seed ortholog evalue2.9e-128
Seed eggNOG ortholog2880.D8LS75
Preferred nameTRMT6
Model size711
KEGG rclassRC00017,RC02950
KEGG koko:K03256,ko:K08730
KEGG ReactionR07376
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
Hectar predicted targeting categorysignal peptide
GOsGO:0000049,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0007154,GO:0007267,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0023052,GO:0030154,GO:0030488,GO:0031515,GO:0031974,GO:0031981,GO:0032259,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045165,GO:0045168,GO:0046331,GO:0046483,GO:0048869,GO:0070013,GO:0071704,GO:0080009,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990234
Exons5
EggNOG free text desc.tRNA methylation
EggNOG OGsKOG1416@1,KOG1416@2759
EC2.7.8.29
Cds size711
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464087.3210914-CDS-Ecto-sp13_S_contig8153:278..4101681464087.3210914-CDS-Ecto-sp13_S_contig8153:278..410Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8153 279..410 +
1681464087.3325627-CDS-Ecto-sp13_S_contig8153:901..11051681464087.3325627-CDS-Ecto-sp13_S_contig8153:901..1105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8153 902..1105 +
1681464087.3434503-CDS-Ecto-sp13_S_contig8153:1666..17381681464087.3434503-CDS-Ecto-sp13_S_contig8153:1666..1738Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8153 1667..1738 +
1681464087.3524034-CDS-Ecto-sp13_S_contig8153:2111..22461681464087.3524034-CDS-Ecto-sp13_S_contig8153:2111..2246Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8153 2112..2246 +
1681464087.361248-CDS-Ecto-sp13_S_contig8153:4163..43311681464087.361248-CDS-Ecto-sp13_S_contig8153:4163..4331Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8153 4164..4331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8153.19496.1prot_Ecto-sp13_S_contig8153.19496.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8153 279..4331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8153.19496.1

>prot_Ecto-sp13_S_contig8153.19496.1 ID=prot_Ecto-sp13_S_contig8153.19496.1|Name=mRNA_Ecto-sp13_S_contig8153.19496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=237bp
MSLCWKALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDH
AEKDLLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEY
RTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVI
ACKFDPIAAVDAMLPYLTPSRPFAIYSEFIEVLPGRTHPLNNMSSCGGYV
LTGIKITNNRDPRGVIPKARIPDMAKRHKKKRYKRT*
back to top

mRNA from alignment at Ecto-sp13_S_contig8153:279..4331+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8153.19496.1 ID=mRNA_Ecto-sp13_S_contig8153.19496.1|Name=mRNA_Ecto-sp13_S_contig8153.19496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4053bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8153:279..4331+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCTTTGCTGGAAGGCTCTGGTCCTCGATACGTGCATGGGGGTGGT
GACTGCAGCCATGCTAGAGCGCATGGGCTGCCAGGGGCGCATTTTCGCCC
TGTATGCGCAGAGCCAGCCGAGCATGGATGCGGTGAGTTCGAGAGAGAGG
GAGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGAGGGGGTAGAGCAAG
ACGGACAGACAGAGGCCACGGATCGAATGATCTGTTCATTTTTGAAGTAG
CATGCCTAGGCTGCGCCTTTTCCCGTCTTCAATATCTCACCCCCATGTCC
ACTCCGACACCACCGGCACGAGGGGAATAGAAACGCGTCGCTCGTGTCTT
ACCCGGCTAATTGGCTAATTTTTTTTCGTTGGTACGCCGACGAGCGCGGT
CAGTTGTCGAAACACGCACCTACAAAGCGTGTTGCTGGGTTAGCAACTTT
TCACTGTTCGTCTTGCCATTGGTCAGCAACGATAGTGCTGTCGATACTTA
CCAACACCCGCACATATGGACCCCCCCCCACGCGCCTCATATACATCCAT
CAATGCACCATCACCACGGCGGCGGTCATCCCCCCCCCCCCCCCCCCCCC
CCAAACACACCCGGTGCCACCAGGTGCGCAAGTTCGATCATGCCGAGAAG
GATCTCCTCAAGTGCCTGCTGCCGCTGCACACGAGCGAGCTCGGTCGGCT
GTCGATCCCGGAGTCGGAGCGAGAGGCTGACCCTGTGGATGACGGGGGCC
CCGGGGACAGTCGCACCGAGGAGGAGGCGCTGGCGGAGTATAGGACGGTC
ATGGACGACCACGGGGTGCCCGAGAAGGTATTCTTTTGCGGGGGTTTGGG
TGGTCGGGGGTATGATTTTGGGGGTTGTAGTCTGATTCGTTCCGGGTCGG
TCGTTTTAATGTTTGGTTTGTGTTTTCTTTGCCGGGGTGGGTGTAGCTTG
GGTTGTCGTCGTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCGTTT
ATTCGTTTACTCATCGGAGCTTGCCGCTTGAAGCTAGGCGAGGTTAGGTA
GCAAGCAACGGTCTGATTTCTTGGAAGCGATCAAGTACATCGGGGCCCTC
GAAATTGGCGCACAAAGAAACTCATGCATCGACGATGCAACGGAAGGGTA
AGACCGTGGAAGACAGGACACAATGAAGGTATTCCCCGGCCCCCCTATAC
CCCTCCGCCAAAGCTCGAAACCAACTAGTGACATCTACTCCAGCGTCAGC
GTCGCAACGCGAATACAGGTTCTTGTTTATCGCGCCCTCTACCGCTGCCG
TGCGGATCGTGAAACCGTAACCCTCTGCCTTCGCTGTACCCGCTGCCGAA
CGCCGCCTGTGTTGCTGCTTGTGCTGGGGGAGGAGCAGGACCGACCGGCC
AGGATCGAGAGGAAGCTGGCCAGGATGCGGCGGAATAAGCACAGGCCAGC
GCCGCGGCAGGTGAGGATAAAGAGACACAATTTTGGTCGCGTGGTTCGGT
TTATTCCTTCGCCGGGATGTTTGACGGGCCGACCTTACCTTCCGCTCTCC
TCCGCCGCTCCCCGGTCGGGACACCGACCCACTCTTCAGTAGCCCTCGCA
GGGTTTTCCGTTTTCAGCAAAAAAGTAGGATAAAGTATGCAATCGGGGAA
GTTGGGTTTGGGCTAGGGATAGGTTCTGCGTACCCCCCCCCCGTTGTTTG
TTTTCTAACAAATTCACTTTCTCGCGAAGGCGGTCCCCGCTGCGAGGATA
TTGTAGTAGTTGATCTGCTTCAATTCCTTGGTACCCACGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCAAAAAAAATGAAGGTTCGGGACTGGCTGCG
GCAGGGGTGCGACTGCTTGGTGATCGCTTGCAAGTTCGACCCCATAGCTG
CCGTTGACGCCATGCTCCCGTACCTCACGCCGTCCAGACCCTTCGCGATC
TACTCGGAGTTCATTGAGGTAATTTTCACTGTAGAGATGCAAAAGAACAT
AAAGAAGAGCGGTAAACGAGACGGGAGAAGGCAAAACTGTAAGCGGTATG
AATGTGGTACGAAAGCCACCTAGGTTTTTTTGTCCGCGCGCATTTTTTTC
TCAGCTCCATGAGGTCATATGGGGCGTGCTTGGGCAGAGTTTCATCAGAG
AGGACATGTGCGCGAAATGTTTTTCTCGAAGTGCACGATGAAACGACAAA
CCCCCACGATTTTTTCTGCTACTACAATACTGTTAGCCTGCATGATCTAA
AGAGAGGTCTTCATGGTCTAAAAAGAGGTTTGTGTTTTCTCCGATTCCTT
GTTCGTTTTCGTGTTTAGGTGAATCGTCAGTAGCCTACGCAGCGAAATCG
ATAAGCAAACATATGGGATAAAGTATTCAATCCGTGCTTTGGGTTTAGGG
TTAGGTTAGGGATAGGGTCTGCGTGTGCCCCCTCCTTAGTCTTTTTCTAG
ATACTCTTAAAATCTTGCGTAGGCGGTCCTGAATCGTTGCTTGTTTTTCA
GGAAGATGCTCGGTCTTCAAGGCGGTAGTGGTAGGGCACGGACAGGTGGA
TAATCACGGGGCCCTTTTCATCACCAGACTGCTGTTGAGTGACCCGCCGG
GCAGGCTCGCTAGGGGTGCATGCCGGAAGATGCGGGGTTGCAAGTGTAGT
TTTTTCACGTTAACTGCCTGGGCACTCAAGCGCCTGCCCCTCTCCCCCAA
GCTTTCTTGAGTGGGACGACTTACAATTGCTGACCTCGTGGTGAAAAAAG
CACCAGTGTGCTTTGTTGACCCGATGCACATTGAACACTGTATGCCAGGG
ACTTGGGCTGTTGGTATTCACTGGCGTGTGACACACGTCTGCGCGCGGGT
GTTTTTTGTCATGAATAGTGTGATTCGCCTGGACTTGTCCTTCTTGCGTC
TGCGTCTGCGTCTATTCCTCTTCCCTCCCGTACACGTTCGGCGAACTCCT
AACCTGACGCACTCCATCTCTGCTGTTTTCATGGCGTCTGGGCTATGGCT
ATGATGCCACAACAAGGGTACACCCATTCACTCGCCGAGTTCATTATCCA
TTCCCGGATCATTTTTTCGTTTCGTTCCTCGATGCCACTCGGCAGCCGCT
AGTGTCCTGCTTGCGACATCTGCAGACCAAAGGGGGAGCGGTGAAGCTGC
AGCTATGCGATACCTGGCTAAGGGAGTTCCAGGTTTGGCTCGGCTTCAGT
TTTTTGTTTTGTGCCCGCTTGTGTCCTCTGGCTTCCTTCTCCGCCCCCCC
CAATCCTGCGCTCTTAACTTTCAGCCGTTGGTCTCGCGCTTGCCTCTCTT
GTGGGTTGTTGGCACGTGCACTCCCCCTATGATTGTTGATTGATGGCCGA
TGTATCTCTTGTCACAGCAAGTGGAGTTGTTCGTGTGTGTCTCCCCGATG
AGACCGCAATGCATGCCTCAACAACGTGCTCGTCATCTTTCCACTTTCGT
GTTCTTCGTTCGATCACCTCCGTCTACTGACGACGAGAACAAACGACGGC
GCCAGCCATCAGGGTCCAGGTTTCATGCCCCTTGTCTCGTGTGTCAAGTC
AGTCAGTTTCCTCGGTAACACTACTGCTGAGCACCCTGCAGCCGCACCGC
GCTGCGGACAACGATCGTCCACCAACAAGCCCTTGTGGGCAGAGCCTCTT
TTGTTGTTTTTTTTATCATAGCTTTGTTGACATGTTGCTGGCACTTGCTT
GCGTCCTACTTCGTACATAGTTCCGGCTTGAGTGATGCGCGTAAGTCTCG
CAAGTCGTTGCGTCTACTGGTGTGCTGTCGTTTTGTCGCACGCAACACCG
GCACAACTGTGACGCTTCTTCTTGTTTTCTCCGATCCGTCTGCCTTGCAC
CGTTGCTGCCGCCGCCGCTGGTGCGGAGCACACAGGTCCTGCCAGGGCGA
ACTCACCCTCTCAACAACATGTCGAGCTGCGGCGGGTACGTGCTCACGGG
GATCAAGATCACCAACAACCGGGACCCTCGGGGAGTTATCCCGAAAGCGA
GAATCCCCGACATGGCCAAGAGGCACAAGAAGAAGCGGTATAAGAGGACC
TAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8153:279..4331+

>mRNA_Ecto-sp13_S_contig8153.19496.1 ID=mRNA_Ecto-sp13_S_contig8153.19496.1|Name=mRNA_Ecto-sp13_S_contig8153.19496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=711bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8153:279..4331+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCTTTGCTGGAAGGCTCTGGTCCTCGATACGTGCATGGGGGTGGT
GACTGCAGCCATGCTAGAGCGCATGGGCTGCCAGGGGCGCATTTTCGCCC
TGTATGCGCAGAGCCAGCCGAGCATGGATGCGGTGCGCAAGTTCGATCAT
GCCGAGAAGGATCTCCTCAAGTGCCTGCTGCCGCTGCACACGAGCGAGCT
CGGTCGGCTGTCGATCCCGGAGTCGGAGCGAGAGGCTGACCCTGTGGATG
ACGGGGGCCCCGGGGACAGTCGCACCGAGGAGGAGGCGCTGGCGGAGTAT
AGGACGGTCATGGACGACCACGGGGTGCCCGAGAAGGACCGACCGGCCAG
GATCGAGAGGAAGCTGGCCAGGATGCGGCGGAATAAGCACAGGCCAGCGC
CGCGGCAGGTTCGGGACTGGCTGCGGCAGGGGTGCGACTGCTTGGTGATC
GCTTGCAAGTTCGACCCCATAGCTGCCGTTGACGCCATGCTCCCGTACCT
CACGCCGTCCAGACCCTTCGCGATCTACTCGGAGTTCATTGAGGTCCTGC
CAGGGCGAACTCACCCTCTCAACAACATGTCGAGCTGCGGCGGGTACGTG
CTCACGGGGATCAAGATCACCAACAACCGGGACCCTCGGGGAGTTATCCC
GAAAGCGAGAATCCCCGACATGGCCAAGAGGCACAAGAAGAAGCGGTATA
AGAGGACCTAA
back to top