prot_Ecto-sp13_S_contig80941.19438.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig80941.19438.1
Unique Nameprot_Ecto-sp13_S_contig80941.19438.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length142
Homology
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BLAST of mRNA_Ecto-sp13_S_contig80941.19438.1 vs. uniprot
Match: UPI001FF2BC8D (DNA replication terminus site-binding protein n=1 Tax=Marinobacter sp. S6332 TaxID=2926403 RepID=UPI001FF2BC8D)

HSP 1 Score: 130 bits (327), Expect = 2.420e-34
Identity = 66/139 (47.48%), Postives = 90/139 (64.75%), Query Frame = 0 
Query:    2 WGQKPSSSTITVEQADNRLAWHAANPTKPLLERLCLTEDDLTAIAEQERLDLRRFPPDTRIRHRRDLRVRPLANLLFADELAPPKKQCEAHTPIIVLNSPDLKLGTLKPYDKNKRSNRKKRVDSRASGTPISKILPFFL 140
            WG KP+S  I++E AD +L W A  P+  +L R   T + L     +ER  L   P +T +R+RR LRVRPLANLL+A+    PK Q +AH+P+I +NSP++ LG LK YD  K   RK+R D RA GTP+S++LP F+
Sbjct:  166 WGHKPASQVISLESADAKLEWAAKYPSTEMLVRTGFTLNQLQQTIARERSFLASLPSETSLRYRRKLRVRPLANLLYAEGAKVPKAQRDAHSPLIAINSPNVSLGRLKNYDATKNRQRKRRKDPRACGTPVSRVLPIFI 304
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BLAST of mRNA_Ecto-sp13_S_contig80941.19438.1 vs. uniprot
Match: UPI0018EB5FA9 (Uncharacterized protein n=2 Tax=Marinobacter litoralis TaxID=187981 RepID=UPI0018EB5FA9)

HSP 1 Score: 125 bits (315), Expect = 1.470e-32
Identity = 67/138 (48.55%), Postives = 88/138 (63.77%), Query Frame = 0 
Query:    2 WGQKPSSSTITVEQADNRLAWHAANPTKPLLERLCLTEDDLTAIAEQERLDLRRFPPDTRIRHRRDLRVRPLANLLFADELAPPKKQCEAHTPIIVLNSPDLKLGTLKPYDKNKRSNRKKRVDSRASGTPISKILPFF 139
            WG KP S  I++E AD +L W A + +K LLER  L+  +L     +ER  L   P +T +R RR+LRVRPLANLLF    A  K Q + H P+I++NSP+++LG LK YD  K   RK+R D RA GT IS++LP F
Sbjct:  166 WGHKPGSQRISIESADAKLEWAARHASKALLERTGLSRQELLETVVRERAYLASLPSETFLRLRRELRVRPLANLLFESGAAVSKAQRDGHLPLIIVNSPNVRLGDLKNYDAAKTRQRKRRDDPRACGTRISRVLPLF 303
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80941.19438.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001FF2BC8D2.420e-3447.48DNA replication terminus site-binding protein n=1 ... [more]
UPI0018EB5FA91.470e-3248.55Uncharacterized protein n=2 Tax=Marinobacter litor... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008865DNA replication terminus site-binding proteinPFAMPF05472Tercoord: 1..123
e-value: 8.6E-15
score: 54.5
IPR036384Replication terminator Tus superfamilySUPERFAMILY56596Replication terminator protein (Tus)coord: 34..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80941contigEcto-sp13_S_contig80941:185..610 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80941.19438.1mRNA_Ecto-sp13_S_contig80941.19438.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig80941 185..610 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig80941.19438.1 ID=prot_Ecto-sp13_S_contig80941.19438.1|Name=mRNA_Ecto-sp13_S_contig80941.19438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
TWGQKPSSSTITVEQADNRLAWHAANPTKPLLERLCLTEDDLTAIAEQER
LDLRRFPPDTRIRHRRDLRVRPLANLLFADELAPPKKQCEAHTPIIVLNS
PDLKLGTLKPYDKNKRSNRKKRVDSRASGTPISKILPFFLE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008865DNA_replication_term_site-bd
IPR036384Tus_sf