mRNA_Ecto-sp13_S_contig80941.19438.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80941.19438.1
Unique NamemRNA_Ecto-sp13_S_contig80941.19438.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig80941.19438.1 vs. uniprot
Match: UPI001FF2BC8D (DNA replication terminus site-binding protein n=1 Tax=Marinobacter sp. S6332 TaxID=2926403 RepID=UPI001FF2BC8D)

HSP 1 Score: 130 bits (327), Expect = 2.420e-34
Identity = 66/139 (47.48%), Postives = 90/139 (64.75%), Query Frame = 1 
Query:    4 WGQKPSSSTITVEQADNRLAWHAANPTKPLLERLCLTEDDLTAIAEQERLDLRRFPPDTRIRHRRDLRVRPLANLLFADELAPPKKQCEAHTPIIVLNSPDLKLGTLKPYDKNKRSNRKKRVDSRASGTPISKILPFFL 420
            WG KP+S  I++E AD +L W A  P+  +L R   T + L     +ER  L   P +T +R+RR LRVRPLANLL+A+    PK Q +AH+P+I +NSP++ LG LK YD  K   RK+R D RA GTP+S++LP F+
Sbjct:  166 WGHKPASQVISLESADAKLEWAAKYPSTEMLVRTGFTLNQLQQTIARERSFLASLPSETSLRYRRKLRVRPLANLLYAEGAKVPKAQRDAHSPLIAINSPNVSLGRLKNYDATKNRQRKRRKDPRACGTPVSRVLPIFI 304
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BLAST of mRNA_Ecto-sp13_S_contig80941.19438.1 vs. uniprot
Match: UPI0018EB5FA9 (Uncharacterized protein n=2 Tax=Marinobacter litoralis TaxID=187981 RepID=UPI0018EB5FA9)

HSP 1 Score: 125 bits (315), Expect = 1.470e-32
Identity = 67/138 (48.55%), Postives = 88/138 (63.77%), Query Frame = 1 
Query:    4 WGQKPSSSTITVEQADNRLAWHAANPTKPLLERLCLTEDDLTAIAEQERLDLRRFPPDTRIRHRRDLRVRPLANLLFADELAPPKKQCEAHTPIIVLNSPDLKLGTLKPYDKNKRSNRKKRVDSRASGTPISKILPFF 417
            WG KP S  I++E AD +L W A + +K LLER  L+  +L     +ER  L   P +T +R RR+LRVRPLANLLF    A  K Q + H P+I++NSP+++LG LK YD  K   RK+R D RA GT IS++LP F
Sbjct:  166 WGHKPGSQRISIESADAKLEWAARHASKALLERTGLSRQELLETVVRERAYLASLPSETFLRLRRELRVRPLANLLFESGAAVSKAQRDGHLPLIIVNSPNVRLGDLKNYDAAKTRQRKRRDDPRACGTRISRVLPLF 303
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80941.19438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001FF2BC8D2.420e-3447.48DNA replication terminus site-binding protein n=1 ... [more]
UPI0018EB5FA91.470e-3248.55Uncharacterized protein n=2 Tax=Marinobacter litor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80941contigEcto-sp13_S_contig80941:185..610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start0
Seed ortholog score67.8
Seed ortholog evalue4.7e-09
Seed eggNOG ortholog1046724.KB889829_gene3020
Preferred nametus
Model size426
KEGG koko:K10748
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006274,GO:0006275,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0034641,GO:0034645,GO:0043111,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0060255,GO:0065007,GO:0071704,GO:0071807,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:2000104,GO:2000112,GO:2000113
Exons1
EggNOG free text desc.DNA replication terminus site-binding protein (Ter protein)
EggNOG OGs1NE22@1224,1RS77@1236,28I61@1,2Z895@2,468XE@72275
Cds size426
COG Functional cat.L
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464082.505194-CDS-Ecto-sp13_S_contig80941:184..6101681464082.505194-CDS-Ecto-sp13_S_contig80941:184..610Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80941 185..610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80941.19438.1prot_Ecto-sp13_S_contig80941.19438.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80941 185..610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80941.19438.1

>prot_Ecto-sp13_S_contig80941.19438.1 ID=prot_Ecto-sp13_S_contig80941.19438.1|Name=mRNA_Ecto-sp13_S_contig80941.19438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
TWGQKPSSSTITVEQADNRLAWHAANPTKPLLERLCLTEDDLTAIAEQER
LDLRRFPPDTRIRHRRDLRVRPLANLLFADELAPPKKQCEAHTPIIVLNS
PDLKLGTLKPYDKNKRSNRKKRVDSRASGTPISKILPFFLE*
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mRNA from alignment at Ecto-sp13_S_contig80941:185..610-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80941.19438.1 ID=mRNA_Ecto-sp13_S_contig80941.19438.1|Name=mRNA_Ecto-sp13_S_contig80941.19438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80941:185..610- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCTGGGGCCAGAAGCCTAGCAGTTCAACGATCACAGTCGAACAAGCAGA
CAACCGCTTGGCATGGCACGCTGCTAATCCTACCAAGCCCCTTTTGGAGC
GACTTTGTTTAACAGAAGATGACCTGACTGCCATTGCTGAACAAGAACGT
TTGGATTTAAGACGGTTTCCGCCCGATACCAGGATCCGCCATCGGCGAGA
CCTTCGCGTTCGCCCTTTAGCGAATTTGCTATTTGCTGACGAATTAGCCC
CTCCCAAAAAACAATGCGAAGCCCACACGCCAATAATCGTGCTAAACAGC
CCCGACCTTAAGCTCGGAACCTTAAAACCCTACGACAAAAACAAGCGCTC
AAACCGGAAAAAAAGAGTCGACTCACGAGCCAGTGGGACTCCAATTTCGA
AAATACTCCCATTTTTCCTCGAATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80941:185..610-

>mRNA_Ecto-sp13_S_contig80941.19438.1 ID=mRNA_Ecto-sp13_S_contig80941.19438.1|Name=mRNA_Ecto-sp13_S_contig80941.19438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80941:185..610- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCTGGGGCCAGAAGCCTAGCAGTTCAACGATCACAGTCGAACAAGCAGA
CAACCGCTTGGCATGGCACGCTGCTAATCCTACCAAGCCCCTTTTGGAGC
GACTTTGTTTAACAGAAGATGACCTGACTGCCATTGCTGAACAAGAACGT
TTGGATTTAAGACGGTTTCCGCCCGATACCAGGATCCGCCATCGGCGAGA
CCTTCGCGTTCGCCCTTTAGCGAATTTGCTATTTGCTGACGAATTAGCCC
CTCCCAAAAAACAATGCGAAGCCCACACGCCAATAATCGTGCTAAACAGC
CCCGACCTTAAGCTCGGAACCTTAAAACCCTACGACAAAAACAAGCGCTC
AAACCGGAAAAAAAGAGTCGACTCACGAGCCAGTGGGACTCCAATTTCGA
AAATACTCCCATTTTTCCTCGAATAA
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