prot_Ecto-sp13_S_contig7423.18603.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7423.18603.1
Unique Nameprot_Ecto-sp13_S_contig7423.18603.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length345
Homology
BLAST of mRNA_Ecto-sp13_S_contig7423.18603.1 vs. uniprot
Match: A0A6H5JXQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ5_9PHAE)

HSP 1 Score: 431 bits (1108), Expect = 5.700e-147
Identity = 245/284 (86.27%), Postives = 248/284 (87.32%), Query Frame = 0
Query:   55 EDMFGVGESVSKGDGGKGGDVLTLIGSDVGRRSRSSKLPGMRVTGNVMSEHDSMRPVALPVTATAQTPGSRLFAQANNQAELTEEEDSSLFFVQLPTKLPRPLAACQRGKDGASTPVRGKXXXXXXXXXXGPAVKEEXXXXXXXXXXXXXXXXXXXXAAAEKASEIPADDVAFDQGLRRMRPGKIGKLYIHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQVTKRAVCTPDFEQLYRRADEVSGGXXXXXXXXXXDGFEGXAGAGGDVVGP 338
            E+MFGVGESVSKG GGK GDVLTLIGSDVGRRSRSSKLPGMRVTGNVMSE DSMRPVALPVTATAQTPGSRLFAQANNQAELTEEEDSSLFFVQLPTKLPRPLAA QRGKDGAS PVRGK          GPAVKEE       XXXXXXXXXXX  AAAEKASEIPADDVAFDQGLRRMRPGKIGKLY+HQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQVTKRAVCTPDFEQLYRRADE+SGG          DGFEG AGAGGDV GP
Sbjct:  168 ENMFGVGESVSKGGGGKEGDVLTLIGSDVGRRSRSSKLPGMRVTGNVMSEDDSMRPVALPVTATAQTPGSRLFAQANNQAELTEEEDSSLFFVQLPTKLPRPLAAFQRGKDGASAPVRGKGKGKATG---GPAVKEEAGESGAGXXXXXXXXXXXKGAAAEKASEIPADDVAFDQGLRRMRPGKIGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQVTKRAVCTPDFEQLYRRADEISGGGGGGE-----DGFEGGAGAGGDVGGP 443          
BLAST of mRNA_Ecto-sp13_S_contig7423.18603.1 vs. uniprot
Match: D8LHB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB7_ECTSI)

HSP 1 Score: 351 bits (901), Expect = 9.380e-115
Identity = 223/288 (77.43%), Postives = 227/288 (78.82%), Query Frame = 0
Query:   57 MFGVGESVSKGDGGKGGDVLTLIGSDVGRRSRSSKLPGMRVTGNVMSEHDSMRPVALPVTATAQTPGSRLFAQANNQAELTEEEDSSLFFVQLPTKLPRPLAACQRGKDGASTPVRGKXXXXXXXXXXGPAVKEEXXXXXXXXXXXXXXXXXXXXAAAEKASEIPADDVAFDQGLRRMRPGKIGKLYIHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQVTKRAVCTPDFEQLYRRADEVSGGXXXXXXXXXXDGFEGXAGAGGDVVGPVKMEVS 344
            MFGVGESVSKG GGKGGDVLTLIGSDVGRRSRSSKLPGMR                                   NQAELTEEEDSSLFFVQLPTKLPRPLAACQRGKDGAS PVRGK  XXXX    GPAVKEE       XXXXXXXXXXXXX  AEKASEI ADDVAFD+GLRRMRPGKIGKLY+HQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQVTKRAVCTPDFEQLYRRADE+SGG XXXXXXX  DGFEG    GGDV GPVKMEV+
Sbjct:  268 MFGVGESVSKGGGGKGGDVLTLIGSDVGRRSRSSKLPGMR-----------------------------------NQAELTEEEDSSLFFVQLPTKLPRPLAACQRGKDGASAPVRGKGKXXXXATG-GPAVKEEAGESGAGXXXXXXXXXXXXXXXAEKASEIAADDVAFDRGLRRMRPGKIGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQVTKRAVCTPDFEQLYRRADEISGGGXXXXXXX--DGFEGGXXXGGDVGGPVKMEVA 517          
BLAST of mRNA_Ecto-sp13_S_contig7423.18603.1 vs. uniprot
Match: A0A835ZEC9_9STRA (RNA polymerase III RPC4-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC9_9STRA)

HSP 1 Score: 116 bits (290), Expect = 3.130e-25
Identity = 74/219 (33.79%), Postives = 100/219 (45.66%), Query Frame = 0
Query:   95 MRVTGNVMSEHDSMRPVALPVTATAQTPGSRLFAQANNQAELTEEEDSSLFFVQLPTKLPR--------PLAACQRGKDGASTPVRGKXXXXXXXXXXGPAVKEEXXXXXXXXXXXXXXXXXXXXAAAEKASEIPADDVAFDQGLRRMRPGKIGKLYIHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQVTKRAVCTPDFEQLYRR 305
            M+V GN    HD +RP+ +P +         LFA+ ++ A L  EED  +FFVQLPT LPR        P      G DG      G                                      AAA+ + E       +D  L  M PG+IGKL I +SG  +L++ GV+L V  G+P  FVE+   ++ KQKT   FGQVT+R VC P+FE L+ +
Sbjct:  251 MKVLGNAFQPHDVLRPIVIPFSKNTAVRPEDLFARPHDAAALQAEEDEGIFFVQLPTALPRVFPESMEHPSQPTDGGGDGXXXXXHGAVGGTRAQGAK---------------------------AAADTSGEADGSP-GYDNSLTTMLPGRIGKLQIRRSGTVQLLLAGVALDVSAGMPCHFVEELTCVNPKQKTMSMFGQVTRRLVCAPNFEDLHEQ 441          
BLAST of mRNA_Ecto-sp13_S_contig7423.18603.1 vs. uniprot
Match: A0A7S2XXH9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXH9_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 9.440e-22
Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 0
Query:  216 KASEIPADDVAFDQGLRRMRPGKIGKLYIHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQVTKRAVCTPDFEQLYRRAD 307
            ++ E   +DV  D+ LR++  G++GKL IH+SGK +L IGG++  V PGLP  F +  ++ID +QK  C FG+V+KR VCTPDFEQL+++ +
Sbjct:   21 ESMEEEDEDVIHDKSLRQLPSGRLGKLRIHRSGKVKLWIGGMAFEVSPGLPCRFAQDVIAIDKEQKKCCFFGEVSKRLVCTPDFEQLFQKRE 112          
BLAST of mRNA_Ecto-sp13_S_contig7423.18603.1 vs. uniprot
Match: A0A7S3UWU6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWU6_HETAK)

HSP 1 Score: 90.9 bits (224), Expect = 4.940e-19
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 0
Query:  223 DDVAFDQGLRRMRPGKIGKLYIHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQVTKRAVCTPDFEQLYRRADE 308
            +D   D GLRR+ PG++G++ +H SG+ +L +G     V PGLP  FV+  V++DA+  T C FGQ++KR VCTPDFE+L+   ++
Sbjct:    5 EDPVADGGLRRVAPGRVGRVRVHASGRVKLTLGDTVFDVAPGLPCHFVQDVVAVDAEGGTACFFGQLSKRVVCTPDFEKLFAEKEK 90          
BLAST of mRNA_Ecto-sp13_S_contig7423.18603.1 vs. uniprot
Match: A0A6G0WW31_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WW31_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.880e-11
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 0
Query:  217 ASEIPADDVAFDQGLRRMRPGKIGKLYIHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQVTKRAVCTPDFEQLYR 304
            A+E   DD+ FD+ L  M  G +GK+ IH+SGKA LV+G  +  + PG P +F E+ VSID K++     G V+   V TPDFE L R
Sbjct:  244 ATERSQDDL-FDKSLHAMPGGFMGKINIHKSGKAVLVLGDKTFNIAPGHPPTFYEEAVSIDTKEELLSMLGPVSHHLVVTPDFEALLR 330          
BLAST of mRNA_Ecto-sp13_S_contig7423.18603.1 vs. uniprot
Match: W4GQG3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GQG3_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.550e-10
Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = 0
Query:  214 AEKASEIPADDVAFDQGLRRMRPGKIGKLYIHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQVTKRAVCTPDFEQL 302
            A K+SE    +  FD+ L  M  G +GK+ IH+SGKA LV+G  +  + PG P SF E+ VSID K K     G V    V TPDF+ L
Sbjct:  252 ASKSSEN-GTETRFDKSLSAMPGGYLGKINIHKSGKAVLVLGDKTFDLAPGQPPSFYEEVVSIDVKDKLLSMLGPVATHLVITPDFDSL 339          
BLAST of mRNA_Ecto-sp13_S_contig7423.18603.1 vs. uniprot
Match: A0A1W0AB28_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AB28_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 5.500e-10
Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 0
Query:  227 FDQGLRRMRPGKIGKLYIHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQVTKRAVCTPDFEQL 302
            FD  L  M  G +GK+ IH+SGKA LV+G  +  + P  P +F E+ VSID   +     GQ+T   V TPDFE L
Sbjct:  246 FDNALNNMPSGYLGKIQIHKSGKAVLVLGDKTFDIAPAQPPTFYEELVSIDTNDRVLSHLGQITNHLVITPDFESL 321          
BLAST of mRNA_Ecto-sp13_S_contig7423.18603.1 vs. uniprot
Match: A0A6A5AC38_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AC38_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 8.650e-10
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 0
Query:  224 DVAFDQGLRRMRPGKIGKLYIHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQVTKRAVCTPDFEQL 302
            +  FD+ L  M  G +GK+ IH+SGKA LV+G  +  + PG P SF E+ VSID K K     G V    V TPDF+ L
Sbjct:  266 ETRFDKSLSAMPGGYLGKINIHKSGKAVLVLGDKTFDLAPGQPPSFYEEVVSIDVKDKLLSMLGPVATHLVITPDFDSL 344          
BLAST of mRNA_Ecto-sp13_S_contig7423.18603.1 vs. uniprot
Match: T1HGK6_RHOPR (Uncharacterized protein n=1 Tax=Rhodnius prolixus TaxID=13249 RepID=T1HGK6_RHOPR)

HSP 1 Score: 65.5 bits (158), Expect = 9.860e-10
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 0
Query:  231 LRRMRPGKIGKLYIHQSGKARLVIGGVSLVVHPGLPVSFVEQ--GVSIDAKQKT--FCSFGQVTKRAVCTPDFEQL 302
            LR + PG+IGKL I +SGKARL++G V L V PG   +F +    V++D  QKT    + G +T R V TPD+E L
Sbjct:   26 LRNLPPGRIGKLQILKSGKARLILGDVKLWVEPGTQTAFKQDLISVNLDPNQKTGNMINMGDLTTRMVITPDWESL 101          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7423.18603.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXQ5_9PHAE5.700e-14786.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHB7_ECTSI9.380e-11577.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZEC9_9STRA3.130e-2533.79RNA polymerase III RPC4-domain-containing protein ... [more]
A0A7S2XXH9_9STRA9.440e-2247.83Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3UWU6_HETAK4.940e-1945.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6G0WW31_9STRA2.880e-1145.45Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4GQG3_9STRA2.550e-1044.94Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A1W0AB28_9STRA5.500e-1044.74Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A6A5AC38_9STRA8.650e-1045.57Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
T1HGK6_RHOPR9.860e-1047.37Uncharacterized protein n=1 Tax=Rhodnius prolixus ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007811DNA-directed RNA polymerase III subunit RPC4PFAMPF05132RNA_pol_Rpc4coord: 142..299
e-value: 1.4E-23
score: 84.0
IPR007811DNA-directed RNA polymerase III subunit RPC4PANTHERPTHR13408DNA-DIRECTED RNA POLYMERASE IIIcoord: 134..303
NoneNo IPR availablePANTHERPTHR13408:SF0DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC4coord: 134..303

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7423contigEcto-sp13_S_contig7423:72..5302 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7423.18603.1mRNA_Ecto-sp13_S_contig7423.18603.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7423 72..5302 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7423.18603.1 ID=prot_Ecto-sp13_S_contig7423.18603.1|Name=mRNA_Ecto-sp13_S_contig7423.18603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=345bp
DEQDRKRSSHSRKSGLGGSAVKEDAEGGGSSPAAGLKGSASGGSGGAGEE
EDDDEDMFGVGESVSKGDGGKGGDVLTLIGSDVGRRSRSSKLPGMRVTGN
VMSEHDSMRPVALPVTATAQTPGSRLFAQANNQAELTEEEDSSLFFVQLP
TKLPRPLAACQRGKDGASTPVRGKGKGKAKATAGGPAVKEEAGGSGAGGA
AAGATGGKGKGAAAEKASEIPADDVAFDQGLRRMRPGKIGKLYIHQSGKA
RLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQVTKRAVCTPDFE
QLYRRADEVSGGGGSGGGGGGGDGFEGGAGAGGDVVGPVKMEVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007811RPC4