prot_Ecto-sp13_S_contig732.18485.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig732.18485.1
Unique Nameprot_Ecto-sp13_S_contig732.18485.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length877
Homology
BLAST of mRNA_Ecto-sp13_S_contig732.18485.1 vs. uniprot
Match: A0A6H5L6K7_9PHAE (TFIIB-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6K7_9PHAE)

HSP 1 Score: 793 bits (2047), Expect = 3.230e-272
Identity = 708/876 (80.82%), Postives = 715/876 (81.62%), Query Frame = 0
Query:    1 MYIKRFAAKLDLGSKTNAVCMTALKIIGSMKRDFLASGRQPAGICCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKLPQTVAFPGVEDASAAAGATGGSXXGSALXXXXXXXXXXGAIAEKSVLVSDIRMDPPAFIANRIRDGALKMPWTEQTITETPGAKAGXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRSGVKRKRSPKDKAPRSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANKVWVENDEEGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXEXXEGXXXXXXXXXXXXXXEXXDADYDXXXXXXXXXXXXXXXARLSSKMKVDANTEEGREALTRHVLHIRATKRGASKAKSRAKRSKVESDVYSCLENMFDEDEERGLSVDRGGGXXXXXXXXXXXXXXXXXXXMEATGDXXXXIDGGGGTADRSAGKQAKSPASPASDETLKSREGGAAGEDSXXXXXXXXXXXXXXXXXXXXXXXXXXGLEWGVYLRTEEDSDRTKKEWEKEHKDWVEDQTEKSRILSDGTGLNPSGGVPKKKRKYTLSGSHAVGKNFGEAISLEAAKSKSLKIDHAALQRVMNLDGSLKQVNEGDDVMEEVFEDNLAPPMPSKNSKGIRGRGKSPLTASLSSSSTPAMLKPFTGGAVHPPARRGNTAXXXXXXXXXXXXXXXXXXXXXXXKGAAPVTQPAAVVKAPWARAGPNDGGEKAIKDALALLTSGGLAALPSVSGKSPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERVEEVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMYGEVDEDDDPYGEEA 876
            MYIKRFAAKLDLGSKTNAVCMTALKIIGSMKRDFLASGRQPAGICCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKLPQTVAFPGVEDASAAA            XXXXXXXXXX   AEKSVLVSDIRMDPPAFIANRIRDGALKMPWTEQT+TET GAK  XXXXXXXXXXXXXXXXXXXXXXXXXX GVR GVKRKRSPKDKAPRSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                               XXXXXXXXXXXXX XX     XXXXXXXXXXXXXX ARLSSKMKVDANTEEGREALTRHVLHIRATKRGASKAKSRAKRSKVES+VYSCLENMFDEDEERGLS+DRGG XXXXXXXXXXXXXXXXXXX      XXXX            GK AKSPA PASDETLK R+GGAAGEDS     XXXXXXXXXXXXXXXXXXXX GLEWGVYLRTEEDSDRTKKEWEKEHKDWVEDQTEKSRILSD TGLNP GGVPKKKRKYT SGSHAVGKNFGEAISLEAAKSKSLKIDHAALQRVMNLDGSLKQVNEGDDVMEEVFEDNLAPP+PSKNSKGIRGRGKSPLTASLSSSSTPAMLKPFTGGAV PPARRGNT             XXXXXXX    K  AP+ QPAAVVKAPWARAGPNDGGEKAIKDALALL SGGLAALPSVSGKS PA          XXXXXX      XXXXXXXXXXXXXXXXXXX ERVEEVEG            XXXXXXXXXXXXXXXXXX AMYGE+D   DPYGEEA
Sbjct:  207 MYIKRFAAKLDLGSKTNAVCMTALKIIGSMKRDFLASGRQPAGICCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKLPQTVAFPGVEDASAAA---------XXXXXXXXXXXXXXXTAEKSVLVSDIRMDPPAFIANRIRDGALKMPWTEQTVTETAGAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVRPGVKRKRSPKDKAPRSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARLSSKMKVDANTEEGREALTRHVLHIRATKRGASKAKSRAKRSKVESEVYSCLENMFDEDEERGLSIDRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGK-AKSPAPPASDETLKIRDGGAAGEDSGNKDQXXXXXXXXXXXXXXXXXXXXDGLEWGVYLRTEEDSDRTKKEWEKEHKDWVEDQTEKSRILSDETGLNPPGGVPKKKRKYTFSGSHAVGKNFGEAISLEAAKSKSLKIDHAALQRVMNLDGSLKQVNEGDDVMEEVFEDNLAPPVPSKNSKGIRGRGKSPLTASLSSSSTPAMLKPFTGGAVLPPARRGNTTATAACSDVGPKAXXXXXXXRGGGKRVAPIAQPAAVVKAPWARAGPNDGGEKAIKDALALLKSGGLAALPSVSGKSSPAAAAGSGAGAAXXXXXXRGTKAVXXXXXXXXXXXXXXXXXXXTERVEEVEGEEDGDEPSGVVAXXXXXXXXXXXXXXXXXX-AMYGELDXXXDPYGEEA 1032          
BLAST of mRNA_Ecto-sp13_S_contig732.18485.1 vs. uniprot
Match: UPI00142589F6 (transcription factor IIIB 90 kDa subunit-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142589F6)

HSP 1 Score: 113 bits (282), Expect = 4.960e-22
Identity = 53/99 (53.54%), Postives = 78/99 (78.79%), Query Frame = 0
Query:    1 MYIKRFAAKLDLGSKTNAVCMTALKIIGSMKRDFLASGRQPAGICCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKL 99
            +YI RFA KL+ G KT+ V MTAL+++  MKRD++ +GR+P+G+C AAL ++ R++   R+++EI K VKVCDAT+RKRL EFE TP+ +LT+EE N++
Sbjct:  186 LYIARFAHKLEFGEKTHDVSMTALRLVSRMKRDWMHTGRRPSGLCGAALLVSARLHDFNRTQKEIIKVVKVCDATLRKRLTEFEETPSGKLTIEEFNRI 284          
BLAST of mRNA_Ecto-sp13_S_contig732.18485.1 vs. uniprot
Match: A0A5J4TJR1_9EUKA (Putative transcription factor IIIB 90 kDa subunit (Fragment) n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4TJR1_9EUKA)

HSP 1 Score: 108 bits (270), Expect = 5.230e-22
Identity = 48/98 (48.98%), Postives = 76/98 (77.55%), Query Frame = 0
Query:    1 MYIKRFAAKLDLGSKTNAVCMTALKIIGSMKRDFLASGRQPAGICCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNK 98
            ++I RF+A LD G KT+ V +TALK++  MKRD++ +GR PAG+C AAL +A R++  ERS+++I + V++C+ T+R RLLEFE TPT+ ++++E N+
Sbjct:  127 LFIHRFSANLDFGEKTHQVSLTALKLVQQMKRDWIVTGRSPAGVCGAALLIAARIHNFERSQKQIVEVVRICNHTLRNRLLEFEETPTAHMSLDEFNR 224          
BLAST of mRNA_Ecto-sp13_S_contig732.18485.1 vs. uniprot
Match: A0A6J8EKN3_MYTCO (BRF1 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8EKN3_MYTCO)

HSP 1 Score: 111 bits (277), Expect = 6.460e-22
Identity = 53/95 (55.79%), Postives = 75/95 (78.95%), Query Frame = 0
Query:    1 MYIKRFAAKLDLGSKTNAVCMTALKIIGSMKRDFLASGRQPAGICCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEE 95
            +YI RFA KL+LG KT+ V MTA++++  MKRD++ +GR+P+G+C AAL +A+R++   RS  +I K  KVCD T+RKRL EF+ATP+SQLT+EE
Sbjct:   29 LYIPRFAHKLELGDKTHEVSMTAMRLVQRMKRDWMHTGRRPSGLCGAALLVASRMHEFSRSVRQIIKVAKVCDTTIRKRLSEFKATPSSQLTIEE 123          
BLAST of mRNA_Ecto-sp13_S_contig732.18485.1 vs. uniprot
Match: A0A0L0DXS5_THETB (Transcription factor IIIB 60 kDa subunit n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DXS5_THETB)

HSP 1 Score: 107 bits (266), Expect = 6.510e-22
Identity = 49/98 (50.00%), Postives = 78/98 (79.59%), Query Frame = 0
Query:    1 MYIKRFAAKLDLGSKTNAVCMTALKIIGSMKRDFLASGRQPAGICCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNK 98
            +YI RFAAKL+ G+K + V M+AL+++ SMKRD++  GR+P+GIC AAL +A R++   R+++EI + V++CD T+RKRL EFEATP+S++++ + N+
Sbjct:   38 LYIHRFAAKLEFGAKKHVVAMSALRLVQSMKRDWIHHGRRPSGICGAALLIAARMHGFRRTQKEITQVVRICDLTLRKRLGEFEATPSSEMSLSQFNE 135          
BLAST of mRNA_Ecto-sp13_S_contig732.18485.1 vs. uniprot
Match: UPI0018D68484 (transcription factor IIIB 90 kDa subunit-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D68484)

HSP 1 Score: 112 bits (281), Expect = 7.560e-22
Identity = 52/99 (52.53%), Postives = 78/99 (78.79%), Query Frame = 0
Query:    1 MYIKRFAAKLDLGSKTNAVCMTALKIIGSMKRDFLASGRQPAGICCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKL 99
            +YI RFA KL+   KT+ V MTAL+++G MKRD++ +GR+P+G+C AAL ++ R++   R++++I + VKVCDAT+RKRL EFE TP+ QLT++E NK+
Sbjct:  187 LYIHRFAHKLEFTDKTHEVSMTALRLVGRMKRDWMHTGRRPSGLCGAALLVSARLHNFNRTQKDIIRVVKVCDATLRKRLTEFEETPSGQLTIDEFNKI 285          
BLAST of mRNA_Ecto-sp13_S_contig732.18485.1 vs. uniprot
Match: H0YIV6_HUMAN (Transcription factor IIIB 90 kDa subunit (Fragment) n=1 Tax=Homo sapiens TaxID=9606 RepID=H0YIV6_HUMAN)

HSP 1 Score: 103 bits (258), Expect = 8.690e-22
Identity = 50/99 (50.51%), Postives = 74/99 (74.75%), Query Frame = 0
Query:    1 MYIKRFAAKLDLGSKTNAVCMTALKIIGSMKRDFLASGRQPAGICCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKL 99
            +YI RFA  L+ G K + V MTAL+++  MKRD++ +GR+P+G+C AAL +A R++   R+ +E+   VKVC++T+RKRL EFE TPTSQLT++E  K+
Sbjct:   39 LYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKI 137          
BLAST of mRNA_Ecto-sp13_S_contig732.18485.1 vs. uniprot
Match: UPI0014551B42 (transcription factor IIIB 90 kDa subunit-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014551B42)

HSP 1 Score: 112 bits (280), Expect = 9.960e-22
Identity = 53/99 (53.54%), Postives = 77/99 (77.78%), Query Frame = 0
Query:    1 MYIKRFAAKLDLGSKTNAVCMTALKIIGSMKRDFLASGRQPAGICCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKL 99
            +YI RFA KL+L  K + V MTAL+++G MKRD++  GR+P+G+C AAL +A R++   R++++I + VKVCDAT+RKRL EFE TP+ QLT++E NK+
Sbjct:  187 LYIHRFAHKLELTEKVHEVSMTALRLVGRMKRDWMHLGRRPSGLCGAALLVAARLHNFNRTQKDIIRVVKVCDATLRKRLTEFEETPSGQLTIDEFNKI 285          
BLAST of mRNA_Ecto-sp13_S_contig732.18485.1 vs. uniprot
Match: A0A2T7NX94_POMCA (B-related factor 1 n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NX94_POMCA)

HSP 1 Score: 111 bits (278), Expect = 1.400e-21
Identity = 53/99 (53.54%), Postives = 76/99 (76.77%), Query Frame = 0
Query:    1 MYIKRFAAKLDLGSKTNAVCMTALKIIGSMKRDFLASGRQPAGICCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKL 99
            +Y+ RFA KL  G KT+ V MTAL+++  MKRD++ +GR+P+G+C AAL +A R++   RS +EI K VKVC+AT+RKRL+EF  TP+SQLT+EE + +
Sbjct:  190 LYVPRFAHKLQFGEKTHEVSMTALRLVARMKRDWMHTGRRPSGLCGAALLVAARMHDFARSVKEIIKVVKVCEATIRKRLMEFHDTPSSQLTIEEFHNI 288          
BLAST of mRNA_Ecto-sp13_S_contig732.18485.1 vs. uniprot
Match: A0A8B6BT01_MYTGA (B-related factor 1 n=3 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BT01_MYTGA)

HSP 1 Score: 111 bits (277), Expect = 1.690e-21
Identity = 53/95 (55.79%), Postives = 75/95 (78.95%), Query Frame = 0
Query:    1 MYIKRFAAKLDLGSKTNAVCMTALKIIGSMKRDFLASGRQPAGICCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEE 95
            +YI RFA KL+LG KT+ V MTA++++  MKRD++ +GR+P+G+C AAL +A+R++   RS  +I K  KVCD T+RKRL EF+ATP+SQLT+EE
Sbjct:  185 LYIPRFAHKLELGDKTHEVSMTAMRLVQRMKRDWMHTGRRPSGLCGAALLVASRMHEFSRSVRQIIKVAKVCDTTIRKRLSEFKATPSSQLTIEE 279          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig732.18485.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6K7_9PHAE3.230e-27280.82TFIIB-type domain-containing protein n=2 Tax=Ectoc... [more]
UPI00142589F64.960e-2253.54transcription factor IIIB 90 kDa subunit-like n=1 ... [more]
A0A5J4TJR1_9EUKA5.230e-2248.98Putative transcription factor IIIB 90 kDa subunit ... [more]
A0A6J8EKN3_MYTCO6.460e-2255.79BRF1 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0... [more]
A0A0L0DXS5_THETB6.510e-2250.00Transcription factor IIIB 60 kDa subunit n=1 Tax=T... [more]
UPI0018D684847.560e-2252.53transcription factor IIIB 90 kDa subunit-like n=1 ... [more]
H0YIV6_HUMAN8.690e-2250.51Transcription factor IIIB 90 kDa subunit (Fragment... [more]
UPI0014551B429.960e-2253.54transcription factor IIIB 90 kDa subunit-like n=1 ... [more]
A0A2T7NX94_POMCA1.400e-2153.54B-related factor 1 n=2 Tax=Pomacea canaliculata Ta... [more]
A0A8B6BT01_MYTGA1.690e-2155.79B-related factor 1 n=3 Tax=Mytilus galloprovincial... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 838..859
NoneNo IPR availableCOILSCoilCoilcoord: 332..368
NoneNo IPR availableGENE3D1.10.472.10coord: 1..101
e-value: 7.7E-19
score: 69.7
IPR013150Transcription factor TFIIB, cyclin-like domainPFAMPF00382TFIIBcoord: 3..76
e-value: 4.8E-10
score: 39.3
IPR000812Transcription factor TFIIBPANTHERPTHR11618TRANSCRIPTION INITIATION FACTOR IIB-RELATEDcoord: 2..625
IPR029529Transcription factor IIIB subunit Brf1PANTHERPTHR11618:SF4TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNITcoord: 2..625
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 2..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig732contigEcto-sp13_S_contig732:10523..21757 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig732.18485.1mRNA_Ecto-sp13_S_contig732.18485.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig732 9987..21823 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig732.18485.1 ID=prot_Ecto-sp13_S_contig732.18485.1|Name=mRNA_Ecto-sp13_S_contig732.18485.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=877bp
MYIKRFAAKLDLGSKTNAVCMTALKIIGSMKRDFLASGRQPAGICCAALT
LATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKLP
QTVAFPGVEDASAAAGATGGSGGGSALARGGSGGAGAGAIAEKSVLVSDI
RMDPPAFIANRIRDGALKMPWTEQTITETPGAKAGAGKGASGGTGKKTGR
ATAAPGASAGARGVRSGVKRKRSPKDKAPRSKKKSPPKRRRAAAKGGDAS
SDEGSGEEEVGVAGRRRTLPKRKAAANAAANKVWVENDEEGDGEDGSGAD
GGGGDDDDDPEYSSGKEDDDEEDEGEEKEGDEEEGEEEEEEEDADYDKEE
DEEEGEETEEESARLSSKMKVDANTEEGREALTRHVLHIRATKRGASKAK
SRAKRSKVESDVYSCLENMFDEDEERGLSVDRGGGGSGSGGSGGLGSADV
AAKAMEATGDDDNDIDGGGGTADRSAGKQAKSPASPASDETLKSREGGAA
GEDSGNKSQNKKDDNGNNKGDDNDQDDEEDGLEWGVYLRTEEDSDRTKKE
WEKEHKDWVEDQTEKSRILSDGTGLNPSGGVPKKKRKYTLSGSHAVGKNF
GEAISLEAAKSKSLKIDHAALQRVMNLDGSLKQVNEGDDVMEEVFEDNLA
PPMPSKNSKGIRGRGKSPLTASLSSSSTPAMLKPFTGGAVHPPARRGNTA
ATAASSDVEPKAAAGGGAGRGGGKGAAPVTQPAAVVKAPWARAGPNDGGE
KAIKDALALLTSGGLAALPSVSGKSPPAAAAGSGAGAASAAAAARGTKAA
VTPAPTAASEPVAAAALVATERVEEVEGEEDGDEPSGVVAAEEEEEEEEE
EEDDDEDDDAMYGEVDEDDDPYGEEA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013150TFIIB_cyclin
IPR000812TFIIB
IPR029529Brf1
IPR036915Cyclin-like_sf