prot_Ecto-sp13_S_contig7308.18470.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7308.18470.1
Unique Nameprot_Ecto-sp13_S_contig7308.18470.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length180
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7308.18470.1 vs. uniprot
Match: A0A6H5LAU8_9PHAE (CXXC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU8_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 7.690e-74
Identity = 139/162 (85.80%), Postives = 141/162 (87.04%), Query Frame = 0 
Query:    1 VSGGSXXXXXXXXXRSAISLTDKTGRDAAAXXXPVATPSPVGXXXXXXXXXXXEGNSGGLLRPSIVLAKNPNRGGNLWPARLCDRDEVEESFAHSDLNAEAQAHRALRALLVFLCEGGHHYFAWVSESDIFPMPSGDEGLGAEAGEWLIDFSAGVMWARQLN 162
            VSGGS         RSAISLTDKTGRDAAA   PV       XXXXXXXXX  EG+SGGLLRPSIVLAKNPNRGGNLWPARLCDRDEVEESFAHSDLNAEAQAHRALRALLVFLCEGGHHYFAWVSESDIFPMPSGDEGLGAEAGEWLIDFSAGVMWARQL+
Sbjct:  468 VSGGSCSGSG----RSAISLTDKTGRDAAAAA-PVXXXXXXXXXXXXXXXXEAEGDSGGLLRPSIVLAKNPNRGGNLWPARLCDRDEVEESFAHSDLNAEAQAHRALRALLVFLCEGGHHYFAWVSESDIFPMPSGDEGLGAEAGEWLIDFSAGVMWARQLS 624
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BLAST of mRNA_Ecto-sp13_S_contig7308.18470.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.900e-43
Identity = 82/108 (75.93%), Postives = 84/108 (77.78%), Query Frame = 0 
Query:   55 GNSGGLLRPSIVLAKNPNRGGNLWPARLCDRDEVEESFAHSDLNAEAQAHRALRALLVFLCEGGHHYFAWVSESDIFPMPSGDEGLGAEAGEWLIDFSAGVMWARQLN 162
            G+SGGLLRPSIVLAKNPNRGGNLWPARLCDRDEVEESFAHSDLNAEAQ                        ESDIFPMPSGDEGLGAEAGEWLIDFSAGVMWARQL+
Sbjct:  175 GDSGGLLRPSIVLAKNPNRGGNLWPARLCDRDEVEESFAHSDLNAEAQ------------------------ESDIFPMPSGDEGLGAEAGEWLIDFSAGVMWARQLS 258
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7308.18470.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAU8_9PHAE7.690e-7485.80CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6J0_ECTSI1.900e-4375.93CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.140coord: 59..163
e-value: 3.7E-5
score: 25.8
NoneNo IPR availableSUPERFAMILY63748Tudor/PWWP/MBTcoord: 64..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7308contigEcto-sp13_S_contig7308:1124..3430 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7308.18470.1mRNA_Ecto-sp13_S_contig7308.18470.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7308 1124..3848 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7308.18470.1 ID=prot_Ecto-sp13_S_contig7308.18470.1|Name=mRNA_Ecto-sp13_S_contig7308.18470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=180bp
VSGGSGSGSGSGSGRSAISLTDKTGRDAAAAAAPVATPSPVGGGEEQEGG
GGAEGNSGGLLRPSIVLAKNPNRGGNLWPARLCDRDEVEESFAHSDLNAE
AQAHRALRALLVFLCEGGHHYFAWVSESDIFPMPSGDEGLGAEAGEWLID
FSAGVMWARQLNYTLDDDEEDVHIDVHIN*
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