mRNA_Ecto-sp13_S_contig7308.18470.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7308.18470.1
Unique NamemRNA_Ecto-sp13_S_contig7308.18470.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7308.18470.1 vs. uniprot
Match: A0A6H5LAU8_9PHAE (CXXC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU8_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 3.360e-73
Identity = 147/195 (75.38%), Postives = 154/195 (78.97%), Query Frame = 1 
Query:    1 VSGGSXXXXXXXXXRSAISLTDKTGRDAAAXXXPVATPSPVGXXXXXXXXXXXEGNSGGLLRPSIVLAKNPNRGGNLWPARLCDRDEVEESFAHSDLNAEAQAHRALRALLVFLCEGGHHYFAWVSESDIFPMPSGDEGLGAEAGEWLIDFSAGVMWARQLNYTLDDDEEDVHIDVHIN*CNVFGKFSATLPSPA 585
            VSGGS         RSAISLTDKTGRDAAA   PV       XXXXXXXXX  EG+SGGLLRPSIVLAKNPNRGGNLWPARLCDRDEVEESFAHSDLNAEAQAHRALRALLVFLCEGGHHYFAWVSESDIFPMPSGDEGLGAEAGEWLIDFSAGVMWARQL+  L   EE+  +          G+  ++ PSPA
Sbjct:  468 VSGGSCSGSG----RSAISLTDKTGRDAAAAA-PVXXXXXXXXXXXXXXXXEAEGDSGGLLRPSIVLAKNPNRGGNLWPARLCDRDEVEESFAHSDLNAEAQAHRALRALLVFLCEGGHHYFAWVSESDIFPMPSGDEGLGAEAGEWLIDFSAGVMWARQLS-ALQAAEENKKLTAAST--TPGGRGPSSSPSPA 654
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BLAST of mRNA_Ecto-sp13_S_contig7308.18470.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 9.910e-43
Identity = 82/108 (75.93%), Postives = 84/108 (77.78%), Query Frame = 1 
Query:  163 GNSGGLLRPSIVLAKNPNRGGNLWPARLCDRDEVEESFAHSDLNAEAQAHRALRALLVFLCEGGHHYFAWVSESDIFPMPSGDEGLGAEAGEWLIDFSAGVMWARQLN 486
            G+SGGLLRPSIVLAKNPNRGGNLWPARLCDRDEVEESFAHSDLNAEAQ                        ESDIFPMPSGDEGLGAEAGEWLIDFSAGVMWARQL+
Sbjct:  175 GDSGGLLRPSIVLAKNPNRGGNLWPARLCDRDEVEESFAHSDLNAEAQ------------------------ESDIFPMPSGDEGLGAEAGEWLIDFSAGVMWARQLS 258
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7308.18470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAU8_9PHAE3.360e-7375.38CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6J0_ECTSI9.910e-4375.93CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7308contigEcto-sp13_S_contig7308:1124..3848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score161.4
Seed ortholog evalue4e-37
Seed eggNOG ortholog2880.D7G6J0
Model size679
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1343@2759
Cds size540
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7308.18470.1prot_Ecto-sp13_S_contig7308.18470.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7308 1124..3430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463998.898534-CDS-Ecto-sp13_S_contig7308:1123..14291681463998.898534-CDS-Ecto-sp13_S_contig7308:1123..1429Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7308 1124..1429 +
1681463998.9116516-CDS-Ecto-sp13_S_contig7308:1740..18121681463998.9116516-CDS-Ecto-sp13_S_contig7308:1740..1812Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7308 1741..1812 +
1681463998.9208817-CDS-Ecto-sp13_S_contig7308:3078..31801681463998.9208817-CDS-Ecto-sp13_S_contig7308:3078..3180Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7308 3079..3180 +
1681463998.9298427-CDS-Ecto-sp13_S_contig7308:3370..34301681463998.9298427-CDS-Ecto-sp13_S_contig7308:3370..3430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7308 3371..3430 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463998.939486-UTR-Ecto-sp13_S_contig7308:3430..35071681463998.939486-UTR-Ecto-sp13_S_contig7308:3430..3507Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7308 3431..3507 +
1681463998.9498384-UTR-Ecto-sp13_S_contig7308:3786..38481681463998.9498384-UTR-Ecto-sp13_S_contig7308:3786..3848Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7308 3787..3848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7308.18470.1

>prot_Ecto-sp13_S_contig7308.18470.1 ID=prot_Ecto-sp13_S_contig7308.18470.1|Name=mRNA_Ecto-sp13_S_contig7308.18470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=180bp
VSGGSGSGSGSGSGRSAISLTDKTGRDAAAAAAPVATPSPVGGGEEQEGG
GGAEGNSGGLLRPSIVLAKNPNRGGNLWPARLCDRDEVEESFAHSDLNAE
AQAHRALRALLVFLCEGGHHYFAWVSESDIFPMPSGDEGLGAEAGEWLID
FSAGVMWARQLNYTLDDDEEDVHIDVHIN*
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mRNA from alignment at Ecto-sp13_S_contig7308:1124..3848+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7308.18470.1 ID=mRNA_Ecto-sp13_S_contig7308.18470.1|Name=mRNA_Ecto-sp13_S_contig7308.18470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2725bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7308:1124..3848+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTCCGGAGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGGCGTTCCGC
GATTTCCCTCACCGACAAAACCGGCCGGGATGCCGCCGCCGCCGCCGCCC
CCGTTGCCACCCCCTCCCCCGTAGGTGGAGGGGAGGAGCAGGAGGGCGGC
GGCGGGGCGGAGGGGAACTCCGGGGGCCTGCTGAGGCCGTCCATCGTGCT
GGCCAAGAACCCAAACCGCGGGGGAAACCTCTGGCCGGCCAGGCTCTGCG
ACAGGGATGAGGTGGAGGAGAGCTTCGCGCACTCGGACTTGAACGCGGAG
GCGCAGGTGGGTCGGAGCGTTGCTGGCGAGAGAGGCGTGTTGCCGTGTAG
GGTGAAATTTTTATAGCTTTTTTTTAGAAAATATTTTTGTACTCAATAAA
TGATCGTCAGCCTCGATTTGGTGGAAAACTTCGCGGTGCTGTGGTTTTTG
CATGGTCTTGAACTTGGGGTTTTGTGGAAGCAGCGGCGCTCGTTTAGGCA
TTGTTCCATGGCATGCGCTATCCTGTCCGCGCTCTGATCCTCAGCGTCCG
CGAAACAAACGCATGGTTGCTTTCACTCTGTCTTGTGCTTTTTCCTTCGA
CCGAAACCATTCCGTAGGCACACCGTGCGCTTCGCGCCCTGCTGGTGTTC
CTGTGCGAGGGAGGACATCATTACTTCGCGTGGGTATCGGTAAGTGTGAT
AAGGAGGCGGGATGCGTAGCGAGGTAGCGGAGCCATCACCACTTTGCTCA
GGTCTCGGCAAGTGCCGCAGCAGGCGGGATGTATGTCTGAGAACGCCCGC
AGGTGATGTTTTTTCACTTGACGATGTTTTTTTCACCCCCTGCGGCGTTC
TCGGAGGATGCTGCGATGCCCCCAGCCAGGCTAGATGACATTTTTCGTGA
GCCGCTGAAGCCCCTGGGCGGCGAGGCCCACGCTTCTCTTCTCTGTACCT
CTTCTGTGTCGGGGTACCCTTTTTACCAGCTCTATCCCTATCTTTTGTCG
TCGAATCACCACTTGTCTTTGAGCCGCTGTTAGCCCCTAGGAATGATCTT
TTTCAGCACTCCTGCCCTCAATTTATTCTTTTTTTTGTAATGAAGAATTT
GTCTGTGAGCCACTTTTAGCCCCTCGGAATGATCTTTTTCAGCACTCCTG
CCTTTCATTTACTCTTTTTTTGTACTAAAGAAAATGTCTGTGAGCCGCTT
TTAGCCCCTTGGCGGGCGAGAGCCCCACGCCCGCCGAGGAACGACACGCG
GGCGAGAGCAATAACGCACAGCGATTCCCCCGTTCGCCTTAAGCCCTCCC
TTGTGCCGCTGCTACTACCGGCGTTAGCACGGGAGGGCTTTCCTCTCTGC
CCTTCCTGTCTCCTCCGATGAGGGGGGGGGTTGGGGGGGGGGGGGCGAGG
GGGCGCTTCGTCGGCTTTGATTACCCCGGCCGGGAAGAGATACCCCGATG
TTCGGCCACAGGTCGACGATACAAACACGCCTACGGTTTAGATGAACCTT
GTTGGTTTATGTTTGTGTTTGAGTTGATCACCAGCGTCTGCAGTCCTGCC
GCTGAGAAACTCCACACTATGTAGAACCACTTGCTCCTGTAGCAGCCGGC
TGAATTGGAAAAATAACATTCCTCGGCTCAACCGCGTACGCTTGCAAGGG
AAGGCCCTATGTAGCTCGTGCGTTGTTTTTTTTAGTTTGGTCACGCCGTG
GGGCCTCACTCACTCAGAAATACAATACATAGTAGGTACGATTCGTCATG
TGCCAAGCGCCTCTCTCTTTCATGCGTGCATCCACCCCGGATATCTCTTC
AACCCCTCATACACTGGGCTGCGCTCGGAGCTAAGTACGAAACCGCCAAT
CTTCTTCCACGTTTGTGGTGTTTGGGAATCATGTTTCGACCGCTGTTGCG
CTGCTGTACACATCCGGTTTGGAATGTTGTTATTTTTTTGTTGTGCCTGC
TGCAGGAGTCAGACATCTTCCCGATGCCGTCTGGGGATGAAGGCCTAGGG
GCGGAGGCGGGGGAATGGCTCATTGATTTCTCCGCGGGAGTTATGTGGGC
TCGTCAGGTGCGGGGGCGAAGTAAGGTGTACGTGGGAGCGACCACTGCTG
TGTATCGGACAGGCTGATTGCGCCGCTATGTGTTGTGCGAACGGACTCAC
AGGGCATGTGGGGCTACCAGTAGTATGTTCATCGTGATACCCTAGGTGGC
GTATGACGAATGATATCACCCCCCCCCTCCGTAACCGACTTTGAAAGCTG
AACTACACACTCGACGACGACGAAGAGGATGTGCACATCGATGTGCACAT
CAATTGATGCAACGTTTTCGGAAAGTTCTCGGCGACGCTTCCATCGCCAG
CATTGTCGTCACCTTCGGTCCTTCTGCTGTCGAGGTATCGAGCTTTTGCA
AATCTGTCCAGGAGGTGTGATATCTTATTCTGTAACCTATATTCCATGGT
GGCGCCGTCCTGCTTGCTCCCTGAGCCACCAGATCGGTCCCCAACCTTTC
CTGCCCCTCCGTGCCCACGCGGAACCTCGAGCAGTAACATGCCCCCCGTT
GCTTGGTTGCTTGAGGACGTAAACCTGTTCCCTTCTCCTTCTCTCTCGGC
CCGCGTTTCTCTTTTCCCCGCAAATGGCGAAAAACAACGACGATGTTCTG
CCGGCGAGTACAGCTGTCCGCCCTTCAAGCTGCCGAAGAAAACCAGAAGC
GGCTGACCGTCGCGCCCGCCACGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7308:1124..3848+

>mRNA_Ecto-sp13_S_contig7308.18470.1 ID=mRNA_Ecto-sp13_S_contig7308.18470.1|Name=mRNA_Ecto-sp13_S_contig7308.18470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=540bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7308:1124..3848+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTCCGGAGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGGCGTTCCGC
GATTTCCCTCACCGACAAAACCGGCCGGGATGCCGCCGCCGCCGCCGCCC
CCGTTGCCACCCCCTCCCCCGTAGGTGGAGGGGAGGAGCAGGAGGGCGGC
GGCGGGGCGGAGGGGAACTCCGGGGGCCTGCTGAGGCCGTCCATCGTGCT
GGCCAAGAACCCAAACCGCGGGGGAAACCTCTGGCCGGCCAGGCTCTGCG
ACAGGGATGAGGTGGAGGAGAGCTTCGCGCACTCGGACTTGAACGCGGAG
GCGCAGGCACACCGTGCGCTTCGCGCCCTGCTGGTGTTCCTGTGCGAGGG
AGGACATCATTACTTCGCGTGGGTATCGGAGTCAGACATCTTCCCGATGC
CGTCTGGGGATGAAGGCCTAGGGGCGGAGGCGGGGGAATGGCTCATTGAT
TTCTCCGCGGGAGTTATGTGGGCTCGTCAGCTGAACTACACACTCGACGA
CGACGAAGAGGATGTGCACATCGATGTGCACATCAATTGA
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