prot_Ecto-sp13_S_contig72630.18406.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig72630.18406.1
Unique Nameprot_Ecto-sp13_S_contig72630.18406.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length38
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72630.18406.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.000e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0 
Query:    5 RYVSFRPLLIEDVFGLLLKMPTGRRQLRTFRIAH 38
            +YVSFRPLLIEDVFGLLLKMPTGRRQLRTFRIAH
Sbjct:  701 KYVSFRPLLIEDVFGLLLKMPTGRRQLRTFRIAH 734
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BLAST of mRNA_Ecto-sp13_S_contig72630.18406.1 vs. uniprot
Match: A0A6H5JLU6_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU6_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.010e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0 
Query:    5 RYVSFRPLLIEDVFGLLLKMPTGRRQLRTFRIAH 38
            +YVSFRPLLIEDVFGLLLKMPTGRRQLRTFRIAH
Sbjct:  784 KYVSFRPLLIEDVFGLLLKMPTGRRQLRTFRIAH 817
[Close]
BLAST of mRNA_Ecto-sp13_S_contig72630.18406.1 vs. uniprot
Match: A0A1E7FX63_9STRA (Sister chromatid cohesion protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FX63_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 7.250e-5
Identity = 18/32 (56.25%), Postives = 27/32 (84.38%), Query Frame = 0 
Query:    5 RYVSFRPLLIEDVFGLLLKMPTGRRQLRTFRI 36
            +YV  RPL++ED+F L+LKMP+G+R ++TF I
Sbjct:  236 QYVKLRPLIVEDLFALMLKMPSGKRGMKTFPI 267
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72630.18406.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSV8_ECTSI2.000e-1397.06Sister chromatid cohesion protein n=1 Tax=Ectocarp... [more]
A0A6H5JLU6_9PHAE2.010e-1397.06PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A1E7FX63_9STRA7.250e-556.25Sister chromatid cohesion protein n=1 Tax=Fragilar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72630contigEcto-sp13_S_contig72630:1..114 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72630.18406.1mRNA_Ecto-sp13_S_contig72630.18406.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig72630 1..114 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig72630.18406.1 ID=prot_Ecto-sp13_S_contig72630.18406.1|Name=mRNA_Ecto-sp13_S_contig72630.18406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
MVCVRYVSFRPLLIEDVFGLLLKMPTGRRQLRTFRIAH
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