mRNA_Ecto-sp13_S_contig72630.18406.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72630.18406.1
Unique NamemRNA_Ecto-sp13_S_contig72630.18406.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72630.18406.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.000e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 RYVSFRPLLIEDVFGLLLKMPTGRRQLRTFRIAH 114
            +YVSFRPLLIEDVFGLLLKMPTGRRQLRTFRIAH
Sbjct:  701 KYVSFRPLLIEDVFGLLLKMPTGRRQLRTFRIAH 734
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BLAST of mRNA_Ecto-sp13_S_contig72630.18406.1 vs. uniprot
Match: A0A6H5JLU6_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU6_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.010e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   13 RYVSFRPLLIEDVFGLLLKMPTGRRQLRTFRIAH 114
            +YVSFRPLLIEDVFGLLLKMPTGRRQLRTFRIAH
Sbjct:  784 KYVSFRPLLIEDVFGLLLKMPTGRRQLRTFRIAH 817
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BLAST of mRNA_Ecto-sp13_S_contig72630.18406.1 vs. uniprot
Match: A0A1E7FX63_9STRA (Sister chromatid cohesion protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FX63_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 7.250e-5
Identity = 18/32 (56.25%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   13 RYVSFRPLLIEDVFGLLLKMPTGRRQLRTFRI 108
            +YV  RPL++ED+F L+LKMP+G+R ++TF I
Sbjct:  236 QYVKLRPLIVEDLFALMLKMPSGKRGMKTFPI 267
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72630.18406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSV8_ECTSI2.000e-1397.06Sister chromatid cohesion protein n=1 Tax=Ectocarp... [more]
A0A6H5JLU6_9PHAE2.010e-1397.06PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A1E7FX63_9STRA7.250e-556.25Sister chromatid cohesion protein n=1 Tax=Fragilar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72630contigEcto-sp13_S_contig72630:1..114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score70.1
Seed ortholog evalue2.5e-10
Seed eggNOG ortholog2880.D7FSV8
Model size114
KEGG koko:K06672
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.cohesin loading
EggNOG OGsKOG1020@1,KOG1020@2759
Cds size114
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463994.3888097-CDS-Ecto-sp13_S_contig72630:0..1141681463994.3888097-CDS-Ecto-sp13_S_contig72630:0..114Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72630 1..114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72630.18406.1prot_Ecto-sp13_S_contig72630.18406.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72630 1..114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72630.18406.1

>prot_Ecto-sp13_S_contig72630.18406.1 ID=prot_Ecto-sp13_S_contig72630.18406.1|Name=mRNA_Ecto-sp13_S_contig72630.18406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
MVCVRYVSFRPLLIEDVFGLLLKMPTGRRQLRTFRIAH
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mRNA from alignment at Ecto-sp13_S_contig72630:1..114+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72630.18406.1 ID=mRNA_Ecto-sp13_S_contig72630.18406.1|Name=mRNA_Ecto-sp13_S_contig72630.18406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72630:1..114+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCTGTGTTAGGTACGTGTCGTTTCGCCCCCTGCTGATCGAAGACGT
GTTCGGGCTCTTGCTCAAGATGCCAACCGGGAGGCGGCAGCTGAGGACCT
TCCGCATCGCCCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72630:1..114+

>mRNA_Ecto-sp13_S_contig72630.18406.1 ID=mRNA_Ecto-sp13_S_contig72630.18406.1|Name=mRNA_Ecto-sp13_S_contig72630.18406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72630:1..114+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCTGTGTTAGGTACGTGTCGTTTCGCCCCCTGCTGATCGAAGACGT
GTTCGGGCTCTTGCTCAAGATGCCAACCGGGAGGCGGCAGCTGAGGACCT
TCCGCATCGCCCAC
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