prot_Ecto-sp13_S_contig72462.18379.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig72462.18379.1
Unique Nameprot_Ecto-sp13_S_contig72462.18379.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length61
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72462.18379.1 vs. uniprot
Match: D7FP17_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP17_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 8.050e-21
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0 
Query:   19 DQGRVKLVVGGGGFAPFLHNAVLKMEPGEEKEVTVPPKDAFGE 61
            DQGRVKLVVGGGGFAPFLHNAVLKMEPGEEKEVTVPPKDAFGE
Sbjct:   55 DQGRVKLVVGGGGFAPFLHNAVLKMEPGEEKEVTVPPKDAFGE 97
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BLAST of mRNA_Ecto-sp13_S_contig72462.18379.1 vs. uniprot
Match: A0A7S3WCV8_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WCV8_9SPIT)

HSP 1 Score: 51.2 bits (121), Expect = 1.210e-6
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 0 
Query:   19 DQGRVKLVVGGGGFAPFLHNAVLKMEP-GEEKEVTVPPKDAFGE 61
            D+G V+LVVGGGG+ P LH  + +++  GEEK   + P DAFGE
Sbjct:   22 DEGNVRLVVGGGGYLPVLHEVITQLDVIGEEKTFEIAPYDAFGE 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72462.18379.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP17_ECTSI8.050e-21100.00Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A7S3WCV8_9SPIT1.210e-652.27Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.50.80coord: 12..61
e-value: 1.5E-9
score: 39.3
NoneNo IPR availableSUPERFAMILY54534FKBP-likecoord: 20..61
IPR001179FKBP-type peptidyl-prolyl cis-trans isomerase domainPFAMPF00254FKBP_Ccoord: 20..61
e-value: 5.6E-6
score: 26.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72462contigEcto-sp13_S_contig72462:445..627 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72462.18379.1mRNA_Ecto-sp13_S_contig72462.18379.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig72462 445..627 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig72462.18379.1 ID=prot_Ecto-sp13_S_contig72462.18379.1|Name=mRNA_Ecto-sp13_S_contig72462.18379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
LLEATPTLTCFDPLSGLPDQGRVKLVVGGGGFAPFLHNAVLKMEPGEEKE
VTVPPKDAFGE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001179PPIase_FKBP_dom