mRNA_Ecto-sp13_S_contig72462.18379.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72462.18379.1
Unique NamemRNA_Ecto-sp13_S_contig72462.18379.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72462.18379.1 vs. uniprot
Match: D7FP17_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP17_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 8.050e-21
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:   55 DQGRVKLVVGGGGFAPFLHNAVLKMEPGEEKEVTVPPKDAFGE 183
            DQGRVKLVVGGGGFAPFLHNAVLKMEPGEEKEVTVPPKDAFGE
Sbjct:   55 DQGRVKLVVGGGGFAPFLHNAVLKMEPGEEKEVTVPPKDAFGE 97
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BLAST of mRNA_Ecto-sp13_S_contig72462.18379.1 vs. uniprot
Match: A0A7S3WCV8_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WCV8_9SPIT)

HSP 1 Score: 51.2 bits (121), Expect = 1.210e-6
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   55 DQGRVKLVVGGGGFAPFLHNAVLKMEP-GEEKEVTVPPKDAFGE 183
            D+G V+LVVGGGG+ P LH  + +++  GEEK   + P DAFGE
Sbjct:   22 DEGNVRLVVGGGGYLPVLHEVITQLDVIGEEKTFEIAPYDAFGE 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72462.18379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP17_ECTSI8.050e-21100.00Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A7S3WCV8_9SPIT1.210e-652.27Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72462contigEcto-sp13_S_contig72462:445..627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score93.2
Seed ortholog evalue4.5e-17
Seed eggNOG ortholog2880.D7FP17
Preferred nameMSRA4
Model size183
KEGG koko:K02214,ko:K07304,ko:K14442,ko:K16914
KEGG Pathwayko03018,ko04110,ko04111,ko04113,map03018,map04110,map04111,map04113
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0008113,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0031967,GO:0031975,GO:0033554,GO:0033744,GO:0034599,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071704,GO:0080167,GO:1901564
Exons1
EggNOG free text desc.peptide-methionine (S)-S-oxide reductase activity
EggNOG OGsCOG0225@1,KOG1635@2759
EC1.14.11.27,1.8.4.11,2.7.11.1,3.6.4.13
Cds size183
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03019,ko03032,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463992.200138-CDS-Ecto-sp13_S_contig72462:444..6271681463992.200138-CDS-Ecto-sp13_S_contig72462:444..627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72462 445..627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72462.18379.1prot_Ecto-sp13_S_contig72462.18379.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72462 445..627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72462.18379.1

>prot_Ecto-sp13_S_contig72462.18379.1 ID=prot_Ecto-sp13_S_contig72462.18379.1|Name=mRNA_Ecto-sp13_S_contig72462.18379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
LLEATPTLTCFDPLSGLPDQGRVKLVVGGGGFAPFLHNAVLKMEPGEEKE
VTVPPKDAFGE
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mRNA from alignment at Ecto-sp13_S_contig72462:445..627+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72462.18379.1 ID=mRNA_Ecto-sp13_S_contig72462.18379.1|Name=mRNA_Ecto-sp13_S_contig72462.18379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72462:445..627+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTCGAGGCCACGCCCACCCTCACTTGCTTTGACCCTCTGTCTGGACT
ACCTGACCAGGGGAGAGTGAAGCTTGTGGTGGGCGGGGGAGGCTTCGCCC
CGTTCTTGCACAACGCTGTCCTGAAGATGGAGCCCGGGGAGGAAAAGGAA
GTGACGGTCCCGCCGAAAGACGCCTTCGGGGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72462:445..627+

>mRNA_Ecto-sp13_S_contig72462.18379.1 ID=mRNA_Ecto-sp13_S_contig72462.18379.1|Name=mRNA_Ecto-sp13_S_contig72462.18379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72462:445..627+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTCGAGGCCACGCCCACCCTCACTTGCTTTGACCCTCTGTCTGGACT
ACCTGACCAGGGGAGAGTGAAGCTTGTGGTGGGCGGGGGAGGCTTCGCCC
CGTTCTTGCACAACGCTGTCCTGAAGATGGAGCCCGGGGAGGAAAAGGAA
GTGACGGTCCCGCCGAAAGACGCCTTCGGGGAA
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