prot_Ecto-sp13_S_contig71284.18231.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig71284.18231.1
Unique Nameprot_Ecto-sp13_S_contig71284.18231.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length44
Homology
BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: D7FMY4_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMY4_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 2.210e-19
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0
Query:    1 MSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAV 40
            MSWVLTWFSHDLQDQK+VSRLYDVLLGAHPTLVLYICAAV
Sbjct:   30 MSWVLTWFSHDLQDQKSVSRLYDVLLGAHPTLVLYICAAV 69          
BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: A0A6H5JQF1_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF1_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.860e-19
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0
Query:    1 MSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAV 40
            MSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAV
Sbjct:  304 MSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAV 343          
BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: L8GZY8_ACACA (TBC domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GZY8_ACACA)

HSP 1 Score: 59.3 bits (142), Expect = 4.170e-9
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 0
Query:    1 MSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAV---SFP 43
            +SWVLTWF+HD+    TV+RLYD  L AHP L LY+ AA+   S+P
Sbjct:  195 ISWVLTWFAHDVDQWSTVTRLYDAFLAAHPMLCLYLAAALVARSYP 240          
BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: A0A1R1PJB3_ZANCU (TBC1 domain family member 20 n=1 Tax=Zancudomyces culisetae TaxID=1213189 RepID=A0A1R1PJB3_ZANCU)

HSP 1 Score: 56.6 bits (135), Expect = 3.130e-8
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 0
Query:    1 MSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAA-VSF 42
            +SWVLTWF+HD+ D   V+RLYD  L  HP+ VLY+ AA VSF
Sbjct:   48 ISWVLTWFAHDISDFSIVARLYDFFLVHHPSAVLYVSAALVSF 90          
BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: A0A7S1ZT32_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZT32_TRICV)

HSP 1 Score: 55.5 bits (132), Expect = 3.650e-8
Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 0
Query:    1 MSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAV 40
            +SW++TWFSHD++D  TV RL+D  L AHP   +Y+  A+
Sbjct:   96 LSWIITWFSHDVRDTDTVKRLFDAFLAAHPLFPVYVSVAM 135          
BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: A0A7S3QK23_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QK23_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.800e-8
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 0
Query:    1 MSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAV 40
            +SWV+TWFSHD++D   V RL+D  + +HP + +Y+C A+
Sbjct:  380 LSWVITWFSHDVRDTDVVKRLFDFFIASHPLMPIYVCVAM 419          
BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: A0A7R9UA67_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UA67_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.810e-8
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 0
Query:    1 MSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAVSFPR 44
            +SW+LTWF+HDL + +T  RL+D  L +HP L LYI  A++  R
Sbjct:  286 LSWILTWFAHDLTELETAERLWDAFLVSHPLLPLYISVAITLSR 329          
BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: A0A7S1H8C7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H8C7_HEMAN)

HSP 1 Score: 55.1 bits (131), Expect = 5.460e-8
Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 0
Query:    1 MSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAV 40
            +SWVLTWF+HD+Q   ++ R+YD  L +HP + LY  A+V
Sbjct:   96 VSWVLTWFAHDMQSMPSIQRVYDFFLASHPLMALYFSASV 135          
BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: A0A8H7Q2V2_9FUNG (Rab-GAP TBC domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7Q2V2_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 7.870e-8
Identity = 20/44 (45.45%), Postives = 33/44 (75.00%), Query Frame = 0
Query:    1 MSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAVSFPR 44
            +SW+LTWFSHDL+D   V+RL+D+ + + P++ LY+  A++  R
Sbjct:  109 LSWILTWFSHDLEDYHKVTRLFDLFIASAPSMPLYVACAITCLR 152          
BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: A0A433PX13_9FUNG (Uncharacterized protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433PX13_9FUNG)

HSP 1 Score: 55.1 bits (131), Expect = 8.150e-8
Identity = 20/44 (45.45%), Postives = 31/44 (70.45%), Query Frame = 0
Query:    1 MSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAVSFPR 44
            +SW+LTW+SHDL+D   VSRL+D+ L + P + +Y+ A +   R
Sbjct:   28 LSWILTWYSHDLKDMNKVSRLFDLFLASTPLMPIYVAAMIVLSR 71          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMY4_ECTSI2.210e-1997.50Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JQF1_9PHAE3.860e-19100.00Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
L8GZY8_ACACA4.170e-956.52TBC domain containing protein n=1 Tax=Acanthamoeba... [more]
A0A1R1PJB3_ZANCU3.130e-860.47TBC1 domain family member 20 n=1 Tax=Zancudomyces ... [more]
A0A7S1ZT32_TRICV3.650e-850.00Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S3QK23_9STRA3.800e-847.50Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7R9UA67_9STRA3.810e-850.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1H8C7_HEMAN5.460e-850.00Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A8H7Q2V2_9FUNG7.870e-845.45Rab-GAP TBC domain-containing protein n=1 Tax=Umbe... [more]
A0A433PX13_9FUNG8.150e-845.45Uncharacterized protein n=1 Tax=Jimgerdemannia fla... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.472.80coord: 1..42
e-value: 6.9E-12
score: 47.2
NoneNo IPR availablePANTHERPTHR20913TBC1 DOMAIN FAMILY MEMBER 20/GTPASEcoord: 1..40
NoneNo IPR availablePANTHERPTHR20913:SF7RE60063Pcoord: 1..40
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..42
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 43..44
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
IPR035969Rab-GTPase-TBC domain superfamilySUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 2..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig71284contigEcto-sp13_S_contig71284:515..646 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig71284.18231.1mRNA_Ecto-sp13_S_contig71284.18231.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig71284 515..664 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig71284.18231.1 ID=prot_Ecto-sp13_S_contig71284.18231.1|Name=mRNA_Ecto-sp13_S_contig71284.18231.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
MSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAVSFPR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035969Rab-GTPase_TBC_sf