mRNA_Ecto-sp13_S_contig71284.18231.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig71284.18231.1
Unique NamemRNA_Ecto-sp13_S_contig71284.18231.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: D7FMY4_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMY4_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 6.900e-25
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 VEPYYCMSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAV 138
            VEPYYCMSWVLTWFSHDLQDQK+VSRLYDVLLGAHPTLVLYICAAV
Sbjct:   24 VEPYYCMSWVLTWFSHDLQDQKSVSRLYDVLLGAHPTLVLYICAAV 69
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BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: A0A6H5JQF1_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF1_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.150e-24
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 VEPYYCMSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAV 138
            VEPYYCMSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAV
Sbjct:  298 VEPYYCMSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAV 343
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BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: L8GZY8_ACACA (TBC domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GZY8_ACACA)

HSP 1 Score: 70.5 bits (171), Expect = 5.630e-13
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 VEPYYCMSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAV---SFP 147
            VEPYY +SWVLTWF+HD+    TV+RLYD  L AHP L LY+ AA+   S+P
Sbjct:  189 VEPYYAISWVLTWFAHDVDQWSTVTRLYDAFLAAHPMLCLYLAAALVARSYP 240
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BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: A0A7S3QK23_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QK23_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.080e-12
Identity = 23/46 (50.00%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 VEPYYCMSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAV 138
            +EPY+C+SWV+TWFSHD++D   V RL+D  + +HP + +Y+C A+
Sbjct:  374 MEPYFCLSWVITWFSHDVRDTDVVKRLFDFFIASHPLMPIYVCVAM 419
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BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: K0T1I1_THAOC (Rab-GAP TBC domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T1I1_THAOC)

HSP 1 Score: 66.6 bits (161), Expect = 1.470e-11
Identity = 23/46 (50.00%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 VEPYYCMSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAV 138
            +EPY+C+SW++TWFSHD++D   + RLYD  + +HP LV+Y+  A+
Sbjct:  417 MEPYFCLSWIITWFSHDIRDTSLIKRLYDCFIVSHPLLVVYMSVAM 462
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BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: S2JGG0_MUCC1 (Rab-GAP TBC domain-containing protein n=1 Tax=Mucor circinelloides f. circinelloides (strain 1006PhL) TaxID=1220926 RepID=S2JGG0_MUCC1)

HSP 1 Score: 65.1 bits (157), Expect = 2.190e-11
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 VEPYYCMSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAVSFPR 150
            V PYYC+SWV+TW SHDL D   ++RL+D+ L ++P +V+Y  AAV   R
Sbjct:   31 VLPYYCLSWVITWCSHDLDDLDKITRLFDLFLSSNPFMVVYFAAAVVLSR 80
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BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: A0A137PGR0_CONC2 (RabGAP/TBC (Fragment) n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PGR0_CONC2)

HSP 1 Score: 65.5 bits (158), Expect = 2.500e-11
Identity = 25/50 (50.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 VEPYYCMSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAVSFPR 150
            V+PY+C+SW+LTW SHD+ D   ++RL+DVLL ++P+L++Y   AV+  R
Sbjct:  195 VQPYFCLSWLLTWCSHDIPDLTDLARLFDVLLVSNPSLIIYFVCAVNLNR 244
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BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: A0A8H7R5L1_9FUNG (Rab-GAP TBC domain-containing protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7R5L1_9FUNG)

HSP 1 Score: 65.1 bits (157), Expect = 4.970e-11
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 VEPYYCMSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAVSFPR 150
            V PYYC+SWV+TW SHDL D   ++RL+D+ L ++P +V+Y  AAV   R
Sbjct:  192 VLPYYCLSWVITWCSHDLDDLDKIARLFDLFLSSNPFMVVYFAAAVVLSR 241
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BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: A0A7R9UA67_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UA67_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.110e-11
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 VEPYYCMSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAVSFPR 150
            +EP+Y +SW+LTWF+HDL + +T  RL+D  L +HP L LYI  A++  R
Sbjct:  280 MEPFYALSWILTWFAHDLTELETAERLWDAFLVSHPLLPLYISVAITLSR 329
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BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Match: A0A077WUQ8_9FUNG (Rab-GAP TBC domain-containing protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WUQ8_9FUNG)

HSP 1 Score: 63.9 bits (154), Expect = 6.280e-11
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 VEPYYCMSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAVSFPR 150
            V PYYC+SWV+TWFSHDL D   + RL+D+ L ++P + LY+ AA+   R
Sbjct:   35 VLPYYCLSWVITWFSHDLDDLGKILRLFDLFLCSNPLMPLYLSAALVLSR 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71284.18231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMY4_ECTSI6.900e-2597.83Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JQF1_9PHAE3.150e-24100.00Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
L8GZY8_ACACA5.630e-1359.62TBC domain containing protein n=1 Tax=Acanthamoeba... [more]
A0A7S3QK23_9STRA3.080e-1250.00Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
K0T1I1_THAOC1.470e-1150.00Rab-GAP TBC domain-containing protein (Fragment) n... [more]
S2JGG0_MUCC12.190e-1152.00Rab-GAP TBC domain-containing protein n=1 Tax=Muco... [more]
A0A137PGR0_CONC22.500e-1150.00RabGAP/TBC (Fragment) n=1 Tax=Conidiobolus coronat... [more]
A0A8H7R5L1_9FUNG4.970e-1152.00Rab-GAP TBC domain-containing protein n=1 Tax=Muco... [more]
A0A7R9UA67_9STRA5.110e-1150.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A077WUQ8_9FUNG6.280e-1152.00Rab-GAP TBC domain-containing protein n=1 Tax=Lich... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig71284contigEcto-sp13_S_contig71284:515..664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score85.1
Seed ortholog evalue8.8e-15
Seed eggNOG ortholog2880.D7FMY4
Preferred nameTBC1D20
Model size150
KEGG koko:K02332,ko:K20372
KEGG Pathwayko01100,ko04139,map01100,map04139
KEGG ModuleM00294
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000139,GO:0000902,GO:0000904,GO:0000920,GO:0001654,GO:0001675,GO:0002064,GO:0002088,GO:0002089,GO:0003006,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0006810,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007423,GO:0007548,GO:0008047,GO:0008150,GO:0008406,GO:0008584,GO:0009653,GO:0009887,GO:0009888,GO:0009966,GO:0009987,GO:0010256,GO:0010646,GO:0010927,GO:0012505,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0017016,GO:0017137,GO:0019058,GO:0019068,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0030154,GO:0030173,GO:0030234,GO:0030695,GO:0030855,GO:0031090,GO:0031224,GO:0031228,GO:0031267,GO:0031300,GO:0031301,GO:0031965,GO:0031967,GO:0031975,GO:0031984,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032989,GO:0033116,GO:0033363,GO:0034389,GO:0034622,GO:0035023,GO:0035295,GO:0035459,GO:0035821,GO:0042175,GO:0042592,GO:0043010,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044093,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044788,GO:0044794,GO:0044827,GO:0044829,GO:0045069,GO:0045070,GO:0045137,GO:0046546,GO:0046578,GO:0046661,GO:0046719,GO:0046726,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048518,GO:0048524,GO:0048583,GO:0048592,GO:0048593,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050790,GO:0050792,GO:0050794,GO:0051020,GO:0051049,GO:0051050,GO:0051056,GO:0051179,GO:0051234,GO:0051301,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0051702,GO:0051704,GO:0051817,GO:0051851,GO:0060341,GO:0060429,GO:0060589,GO:0060627,GO:0060628,GO:0061024,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070306,GO:0070307,GO:0070309,GO:0070925,GO:0071840,GO:0072520,GO:0090110,GO:0090114,GO:0090596,GO:0098588,GO:0098772,GO:0098791,GO:0098827,GO:1902531,GO:1902953,GO:1903900,GO:1903902
Exons1
EggNOG free text desc.positive regulation of ER to Golgi vesicle-mediated transport
EggNOG OGsKOG2595@1,KOG2595@2759
Ec32 ortholog descriptionRab-GTPase-TBC domain
Ec32 orthologEc-25_002780.1
EC2.7.7.7
Cds size132
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko03032,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463978.2268674-CDS-Ecto-sp13_S_contig71284:514..6461681463978.2268674-CDS-Ecto-sp13_S_contig71284:514..646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71284 515..646 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463978.2487879-UTR-Ecto-sp13_S_contig71284:646..6641681463978.2487879-UTR-Ecto-sp13_S_contig71284:646..664Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig71284 647..664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig71284.18231.1prot_Ecto-sp13_S_contig71284.18231.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig71284 515..646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig71284.18231.1

>prot_Ecto-sp13_S_contig71284.18231.1 ID=prot_Ecto-sp13_S_contig71284.18231.1|Name=mRNA_Ecto-sp13_S_contig71284.18231.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
MSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAVSFPR
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mRNA from alignment at Ecto-sp13_S_contig71284:515..664-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig71284.18231.1 ID=mRNA_Ecto-sp13_S_contig71284.18231.1|Name=mRNA_Ecto-sp13_S_contig71284.18231.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71284:515..664- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGAACCGTACTACTGCATGTCGTGGGTGCTGACGTGGTTCTCCCACGA
CCTCCAGGACCAAAAGACCGTGTCGAGGCTCTACGACGTGCTCCTTGGGG
CTCATCCCACCCTCGTTCTCTACATCTGTGCGGCTGTGAGTTTTCCACGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig71284:515..664-

>mRNA_Ecto-sp13_S_contig71284.18231.1 ID=mRNA_Ecto-sp13_S_contig71284.18231.1|Name=mRNA_Ecto-sp13_S_contig71284.18231.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71284:515..664- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTGGGTGCTGACGTGGTTCTCCCACGACCTCCAGGACCAAAAGAC
CGTGTCGAGGCTCTACGACGTGCTCCTTGGGGCTCATCCCACCCTCGTTC
TCTACATCTGTGCGGCTGTGAGTTTTCCACGA
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