prot_Ecto-sp13_S_contig7079.18161.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7079.18161.1
Unique Nameprot_Ecto-sp13_S_contig7079.18161.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length208
Homology
BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: D8LG41_ECTSI (RNA binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG41_ECTSI)

HSP 1 Score: 418 bits (1074), Expect = 3.330e-147
Identity = 204/208 (98.08%), Postives = 207/208 (99.52%), Query Frame = 0
Query:    1 MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGKK 208
            MDPRFKATVVLPGD+VTETTTRTTRSLRLGPGLVQHAQDKV+ATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSG +
Sbjct:    1 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVMATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSE 208          
BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: A0A6H5J8L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8L0_9PHAE)

HSP 1 Score: 415 bits (1067), Expect = 5.990e-145
Identity = 203/208 (97.60%), Postives = 207/208 (99.52%), Query Frame = 0
Query:    1 MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGKK 208
            MDPRFKATVVLPGD+VTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPC+YWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAK+MPFELAAGLNGTFWVDSG +
Sbjct:   78 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCTYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKYMPFELAAGLNGTFWVDSGSE 285          
BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: A0A835YY15_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY15_9STRA)

HSP 1 Score: 223 bits (567), Expect = 3.470e-69
Identity = 114/209 (54.55%), Postives = 139/209 (66.51%), Query Frame = 0
Query:    7 ATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNK----------DMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDS 205
            A VVLPGD VTE  T     L LG GL Q   D V ATRAG LR+ PP ++WVE N RRY  + ED VLGI+EDR  D Y+VNIFG  AALL +L FDGA++R+KPNL+ G++V+CRVA+ N           DME EL+C +  H  KKDWMT Q TFGEL GG   RCSL+ ++ L +PDC VL +L   + FE+A G NG FWV+S
Sbjct:   61 AIVVLPGDRVTEHVTAAALKLTLGTGLAQRGDD-VFATRAGTLRHAPPRTWWVEGNQRRYIPKCEDHVLGIIEDRSGDYYRVNIFGPSAALLPLLAFDGATRRNKPNLKPGAIVYCRVASANNASAPRFPEHCDMEPELSCEAAGHALKKDWMTRQGTFGELMGGMYARCSLMQARRLMQPDCAVLSALGAELAFEIAIGENGAFWVNS 268          
BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: A0A1V9Y536_9STRA (Exosome complex exonuclease RRP40 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y536_9STRA)

HSP 1 Score: 216 bits (550), Expect = 2.010e-67
Identity = 109/206 (52.91%), Postives = 144/206 (69.90%), Query Frame = 0
Query:    1 MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSG 206
            +D  F    VLPGD+VT+      + LRLG GLV +    V  T AG+LRYRPP  YW++ N +RY A V+D V+G+V DR A+ Y+++I  S  A LGML FDGASKR++PNL+ GSLV+CRV + NKD+E  LTC +  H +KKDWMTG + +GEL GG + + S+ L+KSL K DC VL +L K +PFE+AAG+NG  WV+SG
Sbjct:   13 IDLAFTPVTVLPGDDVTKHIANLGQKLRLGAGLVANGST-VSCTNAGLLRYRPPNRYWIDFNHKRYVAAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGSLVYCRVLSTNKDLEPALTCEAPSHMTKKDWMTGLALYGELNGGYVFKVSIGLAKSLLKDDCAVLAALGKAIPFEVAAGMNGVVWVNSG 217          
BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: A0A1W0A9P5_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9P5_9STRA)

HSP 1 Score: 216 bits (549), Expect = 2.680e-67
Identity = 107/206 (51.94%), Postives = 146/206 (70.87%), Query Frame = 0
Query:    1 MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSG 206
            +D  FK   VLPGD+VT +   T + LRLG GLV     +VLAT AGVLRYRPP  YW++ N +RY   ++D V+G++ DR A+ Y+++I  S  A LGML FDGASKR++PNL+ GSLV+CRVA+ N+++E  LTC +  H +KKDWMTG + +GEL GG + + S+ L+KSL K +C VL +L + +PFE+A G NG  WV+SG
Sbjct:   13 IDLSFKPLSVLPGDDVTTSIANTNQKLRLGAGLVASG-TQVLATNAGVLRYRPPNRYWIDFNHKRYIPSMDDGVVGVIVDRNAEFYRLDIGASTYATLGMLAFDGASKRNRPNLQPGSLVYCRVASANQNLEPSLTCEAPSHMTKKDWMTGLALYGELNGGYVLKTSIGLAKSLLKDECVVLSALGRAIPFEIAVGFNGIIWVNSG 217          
BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: T0R8U7_SAPDV (KH_dom_type_1 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R8U7_SAPDV)

HSP 1 Score: 216 bits (549), Expect = 2.850e-67
Identity = 107/205 (52.20%), Postives = 145/205 (70.73%), Query Frame = 0
Query:    1 MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDS 205
            +D  FK   VLPGD+VT+     ++ LRLG GL+ +  + + +T AGVLRYRPP  YW++ N +RY   V+D V+G+V DR A+ Y+++I  S  A LGML FDGASKR++PNL+ G+LV+CRV + N+D+E  LTC +  H SKKDWMTG + +GEL GG + + S+ L+KSL K DC VL +L K MPFE+AAG NG  WV+S
Sbjct:   13 IDLAFKPATVLPGDDVTKHIANLSQKLRLGAGLIANG-NAITSTNAGVLRYRPPNRYWLDYNHKRYVPAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGALVYCRVLSTNQDLEPALTCEAPSHMSKKDWMTGLALYGELNGGYVFKASIGLAKSLLKDDCAVLSALGKAMPFEVAAGFNGLVWVNS 216          
BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: A0A5D6XUT6_9STRA (KH_dom_type_1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUT6_9STRA)

HSP 1 Score: 216 bits (550), Expect = 3.400e-67
Identity = 104/205 (50.73%), Postives = 147/205 (71.71%), Query Frame = 0
Query:    1 MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDS 205
            +D  F  TVVLPGD+VT   T+TTR ++LG GL Q +  +V+ T AGVLRYRP   YWV+ N +RY A ++D V+G+V DR A+ Y+VNI  + +A LG L FDGA+KR++P+LR G+LV+ RV+  +KD+E E+TC +  + SKKDWMTG + +GEL GG + + S+ L+K L + DC VL +L + +PFE+A G+NG  WV+S
Sbjct:   30 VDFTFAPTVVLPGDDVTAALTKTTRCVKLGAGLKQLSDQRVVCTNAGVLRYRPANRYWVDYNYKRYAASLDDGVIGVVTDRNAEIYRVNIGAASSATLGALAFDGATKRNRPSLRIGALVYARVSKTHKDLEPEITCEAPANLSKKDWMTGLAVYGELSGGYVFKTSVTLAKRLLQEDCAVLAALGRRLPFEIAVGVNGVVWVNS 234          
BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: A0A8K1CT22_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT22_PYTOL)

HSP 1 Score: 215 bits (548), Expect = 7.260e-67
Identity = 107/205 (52.20%), Postives = 146/205 (71.22%), Query Frame = 0
Query:    1 MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDS 205
            +D  F  TVVLPGD+VTE  T+T++++RLG GL     D+++ T AGVLRYRPP  YWVE + +RY   V+D V+G+V DR A+ Y+VNI  + +  LG L FDGA+KR++P+LR GSLV+ RV   N DME ELTC ++ + +KKDWMTG S +GEL GG + + S+ L+K L + D  VL++LAK + FE+A GLNG  WV+S
Sbjct:   30 VDFLFSPTVVLPGDDVTEILTKTSKNVRLGAGLRLLPGDRIVCTNAGVLRYRPPNRYWVEFDHKRYNVAVDDGVIGVVTDRNAEFYRVNIGAASSVTLGCLAFDGATKRNRPSLRVGSLVYARVLKTNPDMEPELTCEASANMTKKDWMTGLSVYGELTGGYVFKTSISLAKKLLQDDSYVLQALAKSIAFEIAVGLNGIVWVNS 234          
BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: A0A6G0XI83_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI83_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.180e-66
Identity = 105/205 (51.22%), Postives = 144/205 (70.24%), Query Frame = 0
Query:    1 MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDS 205
            +D  F     LPGD+VT+  T  TR LRLG GL+   Q++V+ T AGVLRYRPP  YW++ N +RY   V+D V+G++ DR A+ Y+V+I G+  A LGML FDGASKR++PNL+ GSL++CRV    KD+E  +TC +  H +KKDWMTG + +GEL GG + + S+ L+KSL + DC VL +L K +PFELA G+NG  W++S
Sbjct:   13 VDLAFTPRTCLPGDDVTQHITNVTRKLRLGAGLIADDQNRVVCTNAGVLRYRPPNRYWIDFNHKRYLPSVDDGVVGMIVDRNAEFYRVDIGGAAHATLGMLAFDGASKRNRPNLQPGSLIYCRVLRAAKDLEPCVTCEAPSHLTKKDWMTGLAIYGELIGGFVFKISIGLAKSLLEDDCVVLTALGKSVPFELAVGVNGVVWLNS 217          
BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: W4FDB9_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FDB9_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.300e-66
Identity = 103/205 (50.24%), Postives = 145/205 (70.73%), Query Frame = 0
Query:    1 MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDS 205
            +D  FK    LPGD++T+  T  T+ LRLG GLV    ++V+ T AGVLRYRPP  YW++ N +RY   ++D V+G+V DR A+ Y+V+I GS  A LGML FDGASKR++PN++ GSLV+CRV    KD++  +TC +  H +KKDWMTG + +GEL GG + + S+ L+KSL + +C VL+SL + +PFELA G+NG  W++S
Sbjct:   13 IDLAFKTRTCLPGDDITQHITNVTQKLRLGAGLVATTDNRVVCTNAGVLRYRPPNRYWLDFNHKRYTPALDDGVVGMVVDRNAEFYRVDIGGSSFATLGMLAFDGASKRNRPNMQPGSLVYCRVVRAAKDLDACVTCEAPTHLAKKDWMTGLAIYGELTGGYVFKASIGLAKSLVQDECAVLESLGRAIPFELAVGVNGVVWLNS 217          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG41_ECTSI3.330e-14798.08RNA binding protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5J8L0_9PHAE5.990e-14597.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YY15_9STRA3.470e-6954.55Ribosomal RNA-processing protein 40 n=1 Tax=Tribon... [more]
A0A1V9Y536_9STRA2.010e-6752.91Exosome complex exonuclease RRP40 n=1 Tax=Achlya h... [more]
A0A1W0A9P5_9STRA2.680e-6751.94Ribosomal RNA-processing protein 40 n=1 Tax=Thraus... [more]
T0R8U7_SAPDV2.850e-6752.20KH_dom_type_1 domain-containing protein n=1 Tax=Sa... [more]
A0A5D6XUT6_9STRA3.400e-6750.73KH_dom_type_1 domain-containing protein n=1 Tax=Py... [more]
A0A8K1CT22_PYTOL7.260e-6752.20Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0XI83_9STRA1.180e-6651.22Ribosomal RNA-processing protein 40 n=1 Tax=Aphano... [more]
W4FDB9_9STRA1.300e-6650.24Ribosomal RNA-processing protein 40 n=1 Tax=Aphano... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.100coord: 6..67
e-value: 3.4E-7
score: 32.1
NoneNo IPR availableGENE3D2.40.50.140coord: 69..143
e-value: 8.3E-26
score: 91.5
NoneNo IPR availablePANTHERPTHR21321:SF1EXOSOME COMPLEX COMPONENT RRP40coord: 7..205
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 8..63
IPR004088K Homology domain, type 1PFAMPF15985KH_6coord: 162..206
e-value: 2.5E-8
score: 34.1
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10coord: 153..208
e-value: 3.6E-13
score: 51.0
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 160..206
IPR041054Exosome complex exonuclease Rrp40, N-terminalPFAMPF18311Rrp40_Ncoord: 23..65
e-value: 3.8E-8
score: 33.1
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 7..205
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 64..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7079contigEcto-sp13_S_contig7079:141..3119 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7079.18161.1mRNA_Ecto-sp13_S_contig7079.18161.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7079 141..3119 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7079.18161.1 ID=prot_Ecto-sp13_S_contig7079.18161.1|Name=mRNA_Ecto-sp13_S_contig7079.18161.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp
MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLR
YRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGM
LEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMT
GQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGT
FWVDSGKK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR036612KH_dom_type_1_sf
IPR041054Rrp40_N
IPR026699Exosome_RNA_bind1/RRP40/RRP4
IPR012340NA-bd_OB-fold