mRNA_Ecto-sp13_S_contig7079.18161.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7079.18161.1
Unique NamemRNA_Ecto-sp13_S_contig7079.18161.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: D8LG41_ECTSI (RNA binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG41_ECTSI)

HSP 1 Score: 418 bits (1074), Expect = 3.330e-147
Identity = 204/208 (98.08%), Postives = 207/208 (99.52%), Query Frame = 1 
Query:    1 MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGKK 624
            MDPRFKATVVLPGD+VTETTTRTTRSLRLGPGLVQHAQDKV+ATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSG +
Sbjct:    1 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVMATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSE 208
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BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: A0A6H5J8L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8L0_9PHAE)

HSP 1 Score: 415 bits (1067), Expect = 5.990e-145
Identity = 203/208 (97.60%), Postives = 207/208 (99.52%), Query Frame = 1 
Query:    1 MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGKK 624
            MDPRFKATVVLPGD+VTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPC+YWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAK+MPFELAAGLNGTFWVDSG +
Sbjct:   78 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCTYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKYMPFELAAGLNGTFWVDSGSE 285
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BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: A0A835YY15_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY15_9STRA)

HSP 1 Score: 223 bits (567), Expect = 3.470e-69
Identity = 114/209 (54.55%), Postives = 139/209 (66.51%), Query Frame = 1 
Query:   19 ATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNK----------DMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDS 615
            A VVLPGD VTE  T     L LG GL Q   D V ATRAG LR+ PP ++WVE N RRY  + ED VLGI+EDR  D Y+VNIFG  AALL +L FDGA++R+KPNL+ G++V+CRVA+ N           DME EL+C +  H  KKDWMT Q TFGEL GG   RCSL+ ++ L +PDC VL +L   + FE+A G NG FWV+S
Sbjct:   61 AIVVLPGDRVTEHVTAAALKLTLGTGLAQRGDD-VFATRAGTLRHAPPRTWWVEGNQRRYIPKCEDHVLGIIEDRSGDYYRVNIFGPSAALLPLLAFDGATRRNKPNLKPGAIVYCRVASANNASAPRFPEHCDMEPELSCEAAGHALKKDWMTRQGTFGELMGGMYARCSLMQARRLMQPDCAVLSALGAELAFEIAIGENGAFWVNS 268
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BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: A0A1V9Y536_9STRA (Exosome complex exonuclease RRP40 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y536_9STRA)

HSP 1 Score: 216 bits (550), Expect = 2.010e-67
Identity = 109/206 (52.91%), Postives = 144/206 (69.90%), Query Frame = 1 
Query:    1 MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSG 618
            +D  F    VLPGD+VT+      + LRLG GLV +    V  T AG+LRYRPP  YW++ N +RY A V+D V+G+V DR A+ Y+++I  S  A LGML FDGASKR++PNL+ GSLV+CRV + NKD+E  LTC +  H +KKDWMTG + +GEL GG + + S+ L+KSL K DC VL +L K +PFE+AAG+NG  WV+SG
Sbjct:   13 IDLAFTPVTVLPGDDVTKHIANLGQKLRLGAGLVANGST-VSCTNAGLLRYRPPNRYWIDFNHKRYVAAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGSLVYCRVLSTNKDLEPALTCEAPSHMTKKDWMTGLALYGELNGGYVFKVSIGLAKSLLKDDCAVLAALGKAIPFEVAAGMNGVVWVNSG 217
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BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: A0A1W0A9P5_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9P5_9STRA)

HSP 1 Score: 216 bits (549), Expect = 2.680e-67
Identity = 107/206 (51.94%), Postives = 146/206 (70.87%), Query Frame = 1 
Query:    1 MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSG 618
            +D  FK   VLPGD+VT +   T + LRLG GLV     +VLAT AGVLRYRPP  YW++ N +RY   ++D V+G++ DR A+ Y+++I  S  A LGML FDGASKR++PNL+ GSLV+CRVA+ N+++E  LTC +  H +KKDWMTG + +GEL GG + + S+ L+KSL K +C VL +L + +PFE+A G NG  WV+SG
Sbjct:   13 IDLSFKPLSVLPGDDVTTSIANTNQKLRLGAGLVASG-TQVLATNAGVLRYRPPNRYWIDFNHKRYIPSMDDGVVGVIVDRNAEFYRLDIGASTYATLGMLAFDGASKRNRPNLQPGSLVYCRVASANQNLEPSLTCEAPSHMTKKDWMTGLALYGELNGGYVLKTSIGLAKSLLKDECVVLSALGRAIPFEIAVGFNGIIWVNSG 217
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BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: T0R8U7_SAPDV (KH_dom_type_1 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R8U7_SAPDV)

HSP 1 Score: 216 bits (549), Expect = 2.850e-67
Identity = 107/205 (52.20%), Postives = 145/205 (70.73%), Query Frame = 1 
Query:    1 MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDS 615
            +D  FK   VLPGD+VT+     ++ LRLG GL+ +  + + +T AGVLRYRPP  YW++ N +RY   V+D V+G+V DR A+ Y+++I  S  A LGML FDGASKR++PNL+ G+LV+CRV + N+D+E  LTC +  H SKKDWMTG + +GEL GG + + S+ L+KSL K DC VL +L K MPFE+AAG NG  WV+S
Sbjct:   13 IDLAFKPATVLPGDDVTKHIANLSQKLRLGAGLIANG-NAITSTNAGVLRYRPPNRYWLDYNHKRYVPAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGALVYCRVLSTNQDLEPALTCEAPSHMSKKDWMTGLALYGELNGGYVFKASIGLAKSLLKDDCAVLSALGKAMPFEVAAGFNGLVWVNS 216
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BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: A0A5D6XUT6_9STRA (KH_dom_type_1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUT6_9STRA)

HSP 1 Score: 216 bits (550), Expect = 3.400e-67
Identity = 104/205 (50.73%), Postives = 147/205 (71.71%), Query Frame = 1 
Query:    1 MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDS 615
            +D  F  TVVLPGD+VT   T+TTR ++LG GL Q +  +V+ T AGVLRYRP   YWV+ N +RY A ++D V+G+V DR A+ Y+VNI  + +A LG L FDGA+KR++P+LR G+LV+ RV+  +KD+E E+TC +  + SKKDWMTG + +GEL GG + + S+ L+K L + DC VL +L + +PFE+A G+NG  WV+S
Sbjct:   30 VDFTFAPTVVLPGDDVTAALTKTTRCVKLGAGLKQLSDQRVVCTNAGVLRYRPANRYWVDYNYKRYAASLDDGVIGVVTDRNAEIYRVNIGAASSATLGALAFDGATKRNRPSLRIGALVYARVSKTHKDLEPEITCEAPANLSKKDWMTGLAVYGELSGGYVFKTSVTLAKRLLQEDCAVLAALGRRLPFEIAVGVNGVVWVNS 234
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BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: A0A8K1CT22_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT22_PYTOL)

HSP 1 Score: 215 bits (548), Expect = 7.260e-67
Identity = 107/205 (52.20%), Postives = 146/205 (71.22%), Query Frame = 1 
Query:    1 MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDS 615
            +D  F  TVVLPGD+VTE  T+T++++RLG GL     D+++ T AGVLRYRPP  YWVE + +RY   V+D V+G+V DR A+ Y+VNI  + +  LG L FDGA+KR++P+LR GSLV+ RV   N DME ELTC ++ + +KKDWMTG S +GEL GG + + S+ L+K L + D  VL++LAK + FE+A GLNG  WV+S
Sbjct:   30 VDFLFSPTVVLPGDDVTEILTKTSKNVRLGAGLRLLPGDRIVCTNAGVLRYRPPNRYWVEFDHKRYNVAVDDGVIGVVTDRNAEFYRVNIGAASSVTLGCLAFDGATKRNRPSLRVGSLVYARVLKTNPDMEPELTCEASANMTKKDWMTGLSVYGELTGGYVFKTSISLAKKLLQDDSYVLQALAKSIAFEIAVGLNGIVWVNS 234
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BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: A0A6G0XI83_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI83_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.180e-66
Identity = 105/205 (51.22%), Postives = 144/205 (70.24%), Query Frame = 1 
Query:    1 MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDS 615
            +D  F     LPGD+VT+  T  TR LRLG GL+   Q++V+ T AGVLRYRPP  YW++ N +RY   V+D V+G++ DR A+ Y+V+I G+  A LGML FDGASKR++PNL+ GSL++CRV    KD+E  +TC +  H +KKDWMTG + +GEL GG + + S+ L+KSL + DC VL +L K +PFELA G+NG  W++S
Sbjct:   13 VDLAFTPRTCLPGDDVTQHITNVTRKLRLGAGLIADDQNRVVCTNAGVLRYRPPNRYWIDFNHKRYLPSVDDGVVGMIVDRNAEFYRVDIGGAAHATLGMLAFDGASKRNRPNLQPGSLIYCRVLRAAKDLEPCVTCEAPSHLTKKDWMTGLAIYGELIGGFVFKISIGLAKSLLEDDCVVLTALGKSVPFELAVGVNGVVWLNS 217
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BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Match: W4FDB9_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FDB9_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.300e-66
Identity = 103/205 (50.24%), Postives = 145/205 (70.73%), Query Frame = 1 
Query:    1 MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDS 615
            +D  FK    LPGD++T+  T  T+ LRLG GLV    ++V+ T AGVLRYRPP  YW++ N +RY   ++D V+G+V DR A+ Y+V+I GS  A LGML FDGASKR++PN++ GSLV+CRV    KD++  +TC +  H +KKDWMTG + +GEL GG + + S+ L+KSL + +C VL+SL + +PFELA G+NG  W++S
Sbjct:   13 IDLAFKTRTCLPGDDITQHITNVTQKLRLGAGLVATTDNRVVCTNAGVLRYRPPNRYWLDFNHKRYTPALDDGVVGMVVDRNAEFYRVDIGGSSFATLGMLAFDGASKRNRPNMQPGSLVYCRVVRAAKDLDACVTCEAPTHLAKKDWMTGLAIYGELTGGYVFKASIGLAKSLVQDECAVLESLGRAIPFELAVGVNGVVWLNS 217
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7079.18161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG41_ECTSI3.330e-14798.08RNA binding protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5J8L0_9PHAE5.990e-14597.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YY15_9STRA3.470e-6954.55Ribosomal RNA-processing protein 40 n=1 Tax=Tribon... [more]
A0A1V9Y536_9STRA2.010e-6752.91Exosome complex exonuclease RRP40 n=1 Tax=Achlya h... [more]
A0A1W0A9P5_9STRA2.680e-6751.94Ribosomal RNA-processing protein 40 n=1 Tax=Thraus... [more]
T0R8U7_SAPDV2.850e-6752.20KH_dom_type_1 domain-containing protein n=1 Tax=Sa... [more]
A0A5D6XUT6_9STRA3.400e-6750.73KH_dom_type_1 domain-containing protein n=1 Tax=Py... [more]
A0A8K1CT22_PYTOL7.260e-6752.20Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0XI83_9STRA1.180e-6651.22Ribosomal RNA-processing protein 40 n=1 Tax=Aphano... [more]
W4FDB9_9STRA1.300e-6650.24Ribosomal RNA-processing protein 40 n=1 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7079contigEcto-sp13_S_contig7079:141..3119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score419.5
Seed ortholog evalue9.3e-115
Seed eggNOG ortholog2880.D8LG41
Preferred nameEXOSC3
Model size624
KEGG koko:K03681,ko:K14684
KEGG TC2.A.29.23
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000785,GO:0000956,GO:0001775,GO:0002164,GO:0002200,GO:0002204,GO:0002208,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002312,GO:0002366,GO:0002376,GO:0002377,GO:0002381,GO:0002440,GO:0002443,GO:0002449,GO:0002460,GO:0002520,GO:0002562,GO:0002637,GO:0002639,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002712,GO:0002714,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0002889,GO:0002891,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006310,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006955,GO:0007275,GO:0008150,GO:0008152,GO:0008298,GO:0008408,GO:0009056,GO:0009057,GO:0009791,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0016064,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016444,GO:0016445,GO:0016447,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0019724,GO:0022613,GO:0030097,GO:0030145,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035166,GO:0035167,GO:0035327,GO:0042113,GO:0042254,GO:0043144,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045006,GO:0045190,GO:0045191,GO:0045321,GO:0045830,GO:0045911,GO:0045935,GO:0046483,GO:0046649,GO:0046700,GO:0046872,GO:0046914,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048534,GO:0048542,GO:0048569,GO:0048583,GO:0048584,GO:0048731,GO:0048732,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050867,GO:0050871,GO:0050896,GO:0051052,GO:0051054,GO:0051094,GO:0051171,GO:0051173,GO:0051179,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0051252,GO:0051641,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071031,GO:0071033,GO:0071034,GO:0071035,GO:0071038,GO:0071042,GO:0071043,GO:0071046,GO:0071047,GO:0071049,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354,GO:2000026
Exons5
EggNOG free text desc.nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription
EggNOG OGsCOG1097@1,KOG1004@2759
Ec32 ortholog descriptionRNA binding protein
Ec32 orthologEc-11_002030.1
Cds size624
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463971.1739402-CDS-Ecto-sp13_S_contig7079:140..2251681463971.1739402-CDS-Ecto-sp13_S_contig7079:140..225Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7079 141..225 -
1681463971.1897137-CDS-Ecto-sp13_S_contig7079:608..7321681463971.1897137-CDS-Ecto-sp13_S_contig7079:608..732Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7079 609..732 -
1681463971.2002182-CDS-Ecto-sp13_S_contig7079:1040..11101681463971.2002182-CDS-Ecto-sp13_S_contig7079:1040..1110Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7079 1041..1110 -
1681463971.2095094-CDS-Ecto-sp13_S_contig7079:2377..24441681463971.2095094-CDS-Ecto-sp13_S_contig7079:2377..2444Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7079 2378..2444 -
1681463971.2191803-CDS-Ecto-sp13_S_contig7079:2841..31191681463971.2191803-CDS-Ecto-sp13_S_contig7079:2841..3119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7079 2842..3119 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7079.18161.1prot_Ecto-sp13_S_contig7079.18161.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7079 141..3119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7079.18161.1

>prot_Ecto-sp13_S_contig7079.18161.1 ID=prot_Ecto-sp13_S_contig7079.18161.1|Name=mRNA_Ecto-sp13_S_contig7079.18161.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp
MDPRFKATVVLPGDEVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLR
YRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGM
LEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMT
GQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGT
FWVDSGKK
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mRNA from alignment at Ecto-sp13_S_contig7079:141..3119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7079.18161.1 ID=mRNA_Ecto-sp13_S_contig7079.18161.1|Name=mRNA_Ecto-sp13_S_contig7079.18161.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2979bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7079:141..3119- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCCCCGGTTCAAGGCCACCGTCGTGCTCCCCGGGGACGAAGTTAC
CGAAACCACCACCCGCACCACCAGGAGCCTAAGGCTTGGCCCGGGACTGG
TGCAGCACGCCCAGGACAAGGTCCTGGCTACTCGCGCCGGGGTGCTGAGA
TATCGCCCCCCGTGCTCGTACTGGGTGGAGAGCAACGGGCGGCGGTACGG
GGCGAGGGTGGAGGATCAGGTGCTCGGCATCGTGGAGGACAGGATGGCGG
ATTCCTACAAGGTCAACATATTTGGGAGGTAATCATGCCTGCTGTGGCCA
TTGTTGTTGGTAGCTGATCTTGCGGCTTGTGGTTGTTGGGCTGGTGGTGT
GTCATGACCTGGCTTGAACTTGATACAGGTGGCGGATTCCTTCAAGGTCA
ACATATTCGGGAGGTAATCATGCCTGCTGTGGCCATTGTTGTTGGTAGCT
GATCTTGCGGCTTGTGGTGGTTGGGCTGGTGGTGTGTCATGACCTGGCTT
GAACTTGATACAGGTTGCCAACGGAAACGCGGTGTGAGACGTTCTTGGTA
GCCGTCTTCATGCACAAGAGCCTCTGCTGCGACGCGAAACTGTAGCTACT
TCGCCCCGTCGGCATTCCTTCTATCTCTCTAATTACCTGTTCCCTTTTGC
TCCCCCCCTCACGCACGTATCTCAGCTGCGCAGCTTTGTTGGGCATGCTG
GAGTTTGACGGTGCTTCCAAGCGGAGCAAGCCAAACCTCAGGGTAAGCGT
TCTTTCGTGGTGCATATACTGGGCCGTAATCCCTGTTGAGCATGAACTTG
CTCACATGTACGATTGTAAATATGTCGTTGTTCCAGTTGGCGATCCCAGG
TATAGGTTCTTACAAACACACCGAACGCCGGCTGCGATACCACCTTACAG
AGAATTTTTCTGCTTGATGTTCGGCACCACGGCTGTTTGGCTTTGCTCGG
ATGGTGTCTGTAACGAGCTGTCACGTCGGAAGCTGTGGAAGTCGCTCACA
CGTTGCGTCATTGACACGGCTAGCTTAAATGGCAGCCAAGAGCCGAGGCG
ACCCGGTTCTCGCAAGACGTTGAGATGTCGCCGATTAGAACGTGCGCTAT
CGCCGTGTTCTCTTTCGTTTTTTTCCGCCCCGCAGGGCGTCCATGCAACA
CTCCAAGACGTTCAATCCTACACCATCGTTATCTTTTATTGTACGTGCTC
TTCTCAAGCTTTCCCGGTGGTTAATGTTTACTCATGACATTGTGGGTGCT
GGCTCGAGATATCGGCGACAAAGTGTTTGTTGGTGTATGTCCGGCAGGTA
CCCCGATCACAAAACGAGAAAGCGAGGACTTTTCGCCCCCGGACGTTTGT
GTGTTCGTGGAAAGATTGTACCCCCACCTCCAAGATTTTTCCCGGGTGCT
CTTTCTGCTCATTCCGCTACACGTTCCGCAAGAAGGGCCGTGGAATGCAA
GGAGGAGAATACCTCCCTGACCACCGCCGCTCTTTCGGAGCATTCTCGCA
GTTTGGTTGACTCGCTCATTGCATGAAGAGTAGACGGCCGTAGTTGAGTT
TGAATATCTGTGTGTCGCCATGTTGGAAAACAAATTTGGGTTTCTCCGTT
GTTTTTACCGTTCCGGACATGGACGGCGTGCGTCCACACTACTTCTTGTT
GTTCTTGCGTACAGCAGACTGTTGACATCATGGTGGGCTTGTAGCATATG
CATTCGATATCCTCTATGCATATGATGAAAAATATGTTGCTGTTGGTCTG
ATCATCGGCCACACGAACCCGTTGAATAGACCTTTACCTCCTCGAGCCCC
AGATTTTCAGTCTCACAGGGGTTATCATGTGTTGGGGATTGTGCTCCTCC
TATGTAACGTGCATGCCCCTCATGCGGTACACCAGATGTCTGAAGTGATT
CGCAGCAGCCCAGTGCGATTTCATCGAGGCGAACCCATGCGACAAGCATT
TTCCCACGGTCTGTGCCCAATCTAACCACCAATCTCGCGCCTTGTCCCGA
TTTGAGCAGACCGGGTCGCTAGTGTTCTGCCGGGTGGCGGCGGTGAACAA
AGACATGGAAACGGAGCTCACGTGTACCTGTAAGTTTCTGCTTGTGACAC
CCGTGTCGGAGGTTTCAGCTCGAGATGGTGCACGACGTTTACGTCGGATG
GGGAATTTAGTCGGTGCTTGCCGTACTAGTGTTGTGAAGCAGAGGGTATC
CGCAGGGTTCTAGGGTGGTTTTGTGTAGTGGTGCATACGCAAGGTATGGT
GGTTTCGCTGCCTTGAATACTACTGGCCAGGTACGAGTATTGCGCCGTCC
ATCTTCCCATCCATCTTGCCGTGAGTTTCGTCGCTGCCTCACCGTTCATT
CGCTTTCGTGTCCCCCCCCGCACTGGTTCTTGTCTAGCAACACATCACGG
CTCCAAGAAGGACTGGATGACGGGACAGTCGACGTTCGGAGAGCTTCGTG
GCGGCAAGATGGAGCGGTGTTCTCTTCTCCTTTCCAAGAGCCTCACCAAG
CCCGACTGCAGGTACCGTGTTGGCACCGCGCGTTCTTTTGGGGCAACGCG
TGGTTCGGCAGTTAACAAAGCGAAACATGCCACTATTTTAGTATTTTTTT
AAAGAAAACCAATCAAGCAAGCCAGGCCGAGGGCCCGTCGGAAAGTTTGC
TATTGTGTGTTGATTATTGCTCTCGATGATTCAATGTTGCTGGACATGTG
TATTTGCTAGTTATGTTTCTGAGGCGCCATACCTTGTATGGGTATTGACT
TTCAACATGGACGTTTTTTTCCGGTGTTTTTGCTCAGCGTCTGTACCCTG
TAGATTTCCATATCCGCAGCATAGCCACGTTCCACTTTGTTCAATTCTTC
CACCTGCGGTGTCTTGTGCACGCCCGCCTGCCTGCCTTTGGCAGGGTGCT
CAAGAGCCTAGCCAAGCACATGCCCTTCGAGCTCGCGGCGGGACTCAACG
GGACATTTTGGGTGGACTCAGGTAAGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7079:141..3119-

>mRNA_Ecto-sp13_S_contig7079.18161.1 ID=mRNA_Ecto-sp13_S_contig7079.18161.1|Name=mRNA_Ecto-sp13_S_contig7079.18161.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7079:141..3119- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCCCCGGTTCAAGGCCACCGTCGTGCTCCCCGGGGACGAAGTTAC
CGAAACCACCACCCGCACCACCAGGAGCCTAAGGCTTGGCCCGGGACTGG
TGCAGCACGCCCAGGACAAGGTCCTGGCTACTCGCGCCGGGGTGCTGAGA
TATCGCCCCCCGTGCTCGTACTGGGTGGAGAGCAACGGGCGGCGGTACGG
GGCGAGGGTGGAGGATCAGGTGCTCGGCATCGTGGAGGACAGGATGGCGG
ATTCCTACAAGGTCAACATATTTGGGAGCTGCGCAGCTTTGTTGGGCATG
CTGGAGTTTGACGGTGCTTCCAAGCGGAGCAAGCCAAACCTCAGGACCGG
GTCGCTAGTGTTCTGCCGGGTGGCGGCGGTGAACAAAGACATGGAAACGG
AGCTCACGTGTACCTCAACACATCACGGCTCCAAGAAGGACTGGATGACG
GGACAGTCGACGTTCGGAGAGCTTCGTGGCGGCAAGATGGAGCGGTGTTC
TCTTCTCCTTTCCAAGAGCCTCACCAAGCCCGACTGCAGGGTGCTCAAGA
GCCTAGCCAAGCACATGCCCTTCGAGCTCGCGGCGGGACTCAACGGGACA
TTTTGGGTGGACTCAGGTAAGAAG
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