prot_Ecto-sp13_S_contig70012.18048.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig70012.18048.1
Unique Nameprot_Ecto-sp13_S_contig70012.18048.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length52
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig70012.18048.1 vs. uniprot
Match: A0A835V9Q3_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835V9Q3_VANPL)

HSP 1 Score: 48.9 bits (115), Expect = 2.870e-5
Identity = 21/41 (51.22%), Postives = 30/41 (73.17%), Query Frame = 0 
Query:    1 HSSLIDVCGKGGLPDEALNLFQKMISEGILPNAITYNALIH 41
            +++LID  GK GL  EA N F +M+SEGI+P+ +T N +IH
Sbjct:  256 YNTLIDTYGKAGLLKEAFNTFAQMLSEGIVPDTVTLNTMIH 296
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70012.18048.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835V9Q3_VANPL2.870e-551.22Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 3..42
e-value: 3.1E-10
score: 40.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 2..33
e-value: 2.0E-9
score: 35.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..31
score: 10.95
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 32..52
score: 5.47
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..50
e-value: 1.1E-13
score: 52.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70012contigEcto-sp13_S_contig70012:485..640 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70012.18048.1mRNA_Ecto-sp13_S_contig70012.18048.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig70012 485..640 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig70012.18048.1 ID=prot_Ecto-sp13_S_contig70012.18048.1|Name=mRNA_Ecto-sp13_S_contig70012.18048.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
HSSLIDVCGKGGLPDEALNLFQKMISEGILPNAITYNALIHASAGGGLKL
GD
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf