mRNA_Ecto-sp13_S_contig70012.18048.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70012.18048.1
Unique NamemRNA_Ecto-sp13_S_contig70012.18048.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70012.18048.1 vs. uniprot
Match: A0A835V9Q3_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835V9Q3_VANPL)

HSP 1 Score: 48.9 bits (115), Expect = 2.870e-5
Identity = 21/41 (51.22%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 HSSLIDVCGKGGLPDEALNLFQKMISEGILPNAITYNALIH 123
            +++LID  GK GL  EA N F +M+SEGI+P+ +T N +IH
Sbjct:  256 YNTLIDTYGKAGLLKEAFNTFAQMLSEGIVPDTVTLNTMIH 296
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70012.18048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835V9Q3_VANPL2.870e-551.22Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70012contigEcto-sp13_S_contig70012:485..640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463961.5851169-CDS-Ecto-sp13_S_contig70012:484..6401681463961.5851169-CDS-Ecto-sp13_S_contig70012:484..640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70012 485..640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70012.18048.1prot_Ecto-sp13_S_contig70012.18048.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70012 485..640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70012.18048.1

>prot_Ecto-sp13_S_contig70012.18048.1 ID=prot_Ecto-sp13_S_contig70012.18048.1|Name=mRNA_Ecto-sp13_S_contig70012.18048.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
HSSLIDVCGKGGLPDEALNLFQKMISEGILPNAITYNALIHASAGGGLKL
GD
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mRNA from alignment at Ecto-sp13_S_contig70012:485..640-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70012.18048.1 ID=mRNA_Ecto-sp13_S_contig70012.18048.1|Name=mRNA_Ecto-sp13_S_contig70012.18048.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70012:485..640- (Ectocarpus species13 EcNAP12_S_4_19m)
CACAGCTCCTTGATAGACGTGTGTGGCAAGGGCGGGCTACCAGACGAGGC
TCTCAACCTCTTCCAGAAAATGATATCGGAGGGAATTCTGCCGAACGCCA
TCACCTACAACGCGCTCATTCACGCCTCCGCGGGCGGCGGATTAAAACTC
GGGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70012:485..640-

>mRNA_Ecto-sp13_S_contig70012.18048.1 ID=mRNA_Ecto-sp13_S_contig70012.18048.1|Name=mRNA_Ecto-sp13_S_contig70012.18048.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70012:485..640- (Ectocarpus species13 EcNAP12_S_4_19m)
CACAGCTCCTTGATAGACGTGTGTGGCAAGGGCGGGCTACCAGACGAGGC
TCTCAACCTCTTCCAGAAAATGATATCGGAGGGAATTCTGCCGAACGCCA
TCACCTACAACGCGCTCATTCACGCCTCCGCGGGCGGCGGATTAAAACTC
GGGGAC
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