prot_Ecto-sp13_S_contig6671.17545.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig6671.17545.1
Unique Name	prot_Ecto-sp13_S_contig6671.17545.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	217

Homology

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BLAST of mRNA_Ecto-sp13_S_contig6671.17545.1 vs. uniprot
Match: D8LTY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTY0_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 4.740e-86
Identity = 172/181 (95.03%), Postives = 173/181 (95.58%), Query Frame = 0

Query:   37 MRAKGAALRALWLTAAVATAISGPRSSASASTGXSSSAFVGAAAATVAPLEPFHVRAPRWGARSGPTPRSSPSXXXXXXXXXXXXXXXXXXXETQRQQKDDDLLQRPHASPVAAAVAPKNTLPLMGKALFVTGGGAGAGAAGKGESAGFGVASAWGVVSVVFILMNAVKRLAPIAMQPFSR 217
            M AKGA LRALWLTAAVATAISGPRSSASASTG SSSAFVGAAAATVAPLEPFHVRAP WGARS PTPRSSP XXXXXXXXXXXXXXXXXX ETQRQQK+DDLLQRPHASPVAAAVAPKNTLPLMGKALFVTGGGAGAGAAGKGE AGFGVASAWGVVSVVFILMNAVKRLAPIAMQPFSR
Sbjct:    1 MHAKGATLRALWLTAAVATAISGPRSSASASTGASSSAFVGAAAATVAPLEPFHVRAPHWGARSSPTPRSSPXXXXXXXXXXXXXXXXXXXRETQRQQKNDDLLQRPHASPVAAAVAPKNTLPLMGKALFVTGGGAGAGAAGKGEPAGFGVASAWGVVSVVFILMNAVKRLAPIAMQPFSR 181

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BLAST of mRNA_Ecto-sp13_S_contig6671.17545.1 vs. uniprot
Match: A0A6H5JS44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS44_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 1.410e-82
Identity = 157/181 (86.74%), Postives = 158/181 (87.29%), Query Frame = 0

Query:   37 MRAKGAALRALWLTAAVATAISGPRSSASASTGXSSSAFVGAAAATVAPLEPFHVRAPRWGARSGPTPRSSPSXXXXXXXXXXXXXXXXXXXETQRQQKDDDLLQRPHASPVAAAVAPKNTLPLMGKALFVTGGGAGAGAAGKGESAGFGVASAWGVVSVVFILMNAVKRLAPIAMQPFSR 217
            MRAKG  LR LWLTAAVATAISGPRSSASASTG SSSAFVGAAAATVAPLEPFHVRAPRWGARS PTPR    XXXXXXXXX          ETQR QK+DDLLQRPHASPVAAAVAPKN LPLMGKALFVTGGGAGAGAAGKGE AGFGVASAWGVVSVVFILMNAV RLAPIAMQPFSR
Sbjct:    1 MRAKGETLRTLWLTAAVATAISGPRSSASASTGGSSSAFVGAAAATVAPLEPFHVRAPRWGARSSPTPRXXXXXXXXXXXXXMSIAFASAARETQRHQKNDDLLQRPHASPVAAAVAPKNALPLMGKALFVTGGGAGAGAAGKGEPAGFGVASAWGVVSVVFILMNAVTRLAPIAMQPFSR 181

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig6671.17545.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig6671.17545.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LTY0_ECTSI	4.740e-86	95.03	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JS44_9PHAE	1.410e-82	86.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 183..204
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..182
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 205..217
None	No IPR available	TMHMM	TMhelix		coord: 182..204

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig6671	contig	Ecto-sp13_S_contig6671:5959..7875 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig6671.17545.1	mRNA_Ecto-sp13_S_contig6671.17545.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig6671 5959..7875 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig6671.17545.1 ID=prot_Ecto-sp13_S_contig6671.17545.1|Name=mRNA_Ecto-sp13_S_contig6671.17545.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=217bp
CCPYSYAPHAYCGVQLCPAAASAAATPATGYTAAAGMRAKGAALRALWLT
AAVATAISGPRSSASASTGSSSSAFVGAAAATVAPLEPFHVRAPRWGARS
GPTPRSSPSSSSSSSSSSMSMAFASAARETQRQQKDDDLLQRPHASPVAA
AVAPKNTLPLMGKALFVTGGGAGAGAAGKGESAGFGVASAWGVVSVVFIL
MNAVKRLAPIAMQPFSR