mRNA_Ecto-sp13_S_contig6671.17545.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6671.17545.1
Unique NamemRNA_Ecto-sp13_S_contig6671.17545.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6671.17545.1 vs. uniprot
Match: D8LTY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTY0_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 4.740e-86
Identity = 172/181 (95.03%), Postives = 173/181 (95.58%), Query Frame = 1 
Query:  109 MRAKGAALRALWLTAAVATAISGPRSSASASTGXSSSAFVGAAAATVAPLEPFHVRAPRWGARSGPTPRSSPSXXXXXXXXXXXXXXXXXXXETQRQQKDDDLLQRPHASPVAAAVAPKNTLPLMGKALFVTGGGAGAGAAGKGESAGFGVASAWGVVSVVFILMNAVKRLAPIAMQPFSR 651
            M AKGA LRALWLTAAVATAISGPRSSASASTG SSSAFVGAAAATVAPLEPFHVRAP WGARS PTPRSSP XXXXXXXXXXXXXXXXXX ETQRQQK+DDLLQRPHASPVAAAVAPKNTLPLMGKALFVTGGGAGAGAAGKGE AGFGVASAWGVVSVVFILMNAVKRLAPIAMQPFSR
Sbjct:    1 MHAKGATLRALWLTAAVATAISGPRSSASASTGASSSAFVGAAAATVAPLEPFHVRAPHWGARSSPTPRSSPXXXXXXXXXXXXXXXXXXXRETQRQQKNDDLLQRPHASPVAAAVAPKNTLPLMGKALFVTGGGAGAGAAGKGEPAGFGVASAWGVVSVVFILMNAVKRLAPIAMQPFSR 181
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BLAST of mRNA_Ecto-sp13_S_contig6671.17545.1 vs. uniprot
Match: A0A6H5JS44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS44_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 1.410e-82
Identity = 157/181 (86.74%), Postives = 158/181 (87.29%), Query Frame = 1 
Query:  109 MRAKGAALRALWLTAAVATAISGPRSSASASTGXSSSAFVGAAAATVAPLEPFHVRAPRWGARSGPTPRSSPSXXXXXXXXXXXXXXXXXXXETQRQQKDDDLLQRPHASPVAAAVAPKNTLPLMGKALFVTGGGAGAGAAGKGESAGFGVASAWGVVSVVFILMNAVKRLAPIAMQPFSR 651
            MRAKG  LR LWLTAAVATAISGPRSSASASTG SSSAFVGAAAATVAPLEPFHVRAPRWGARS PTPR    XXXXXXXXX          ETQR QK+DDLLQRPHASPVAAAVAPKN LPLMGKALFVTGGGAGAGAAGKGE AGFGVASAWGVVSVVFILMNAV RLAPIAMQPFSR
Sbjct:    1 MRAKGETLRTLWLTAAVATAISGPRSSASASTGGSSSAFVGAAAATVAPLEPFHVRAPRWGARSSPTPRXXXXXXXXXXXXXMSIAFASAARETQRHQKNDDLLQRPHASPVAAAVAPKNALPLMGKALFVTGGGAGAGAAGKGEPAGFGVASAWGVVSVVFILMNAVTRLAPIAMQPFSR 181
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6671.17545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTY0_ECTSI4.740e-8695.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JS44_9PHAE1.410e-8286.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6671contigEcto-sp13_S_contig6671:5959..7875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score269.6
Seed ortholog evalue1.2e-69
Seed eggNOG ortholog2880.D8LTY0
Model size651
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2BRVF@1,2S1X8@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_003930.1
Cds size651
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463917.846082-CDS-Ecto-sp13_S_contig6671:5958..62261681463917.846082-CDS-Ecto-sp13_S_contig6671:5958..6226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6671 5959..6226 +
1681463917.8635297-CDS-Ecto-sp13_S_contig6671:7492..78751681463917.8635297-CDS-Ecto-sp13_S_contig6671:7492..7875Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6671 7493..7875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6671.17545.1prot_Ecto-sp13_S_contig6671.17545.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6671 5959..7875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6671.17545.1

>prot_Ecto-sp13_S_contig6671.17545.1 ID=prot_Ecto-sp13_S_contig6671.17545.1|Name=mRNA_Ecto-sp13_S_contig6671.17545.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=217bp
CCPYSYAPHAYCGVQLCPAAASAAATPATGYTAAAGMRAKGAALRALWLT
AAVATAISGPRSSASASTGSSSSAFVGAAAATVAPLEPFHVRAPRWGARS
GPTPRSSPSSSSSSSSSSMSMAFASAARETQRQQKDDDLLQRPHASPVAA
AVAPKNTLPLMGKALFVTGGGAGAGAAGKGESAGFGVASAWGVVSVVFIL
MNAVKRLAPIAMQPFSR
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mRNA from alignment at Ecto-sp13_S_contig6671:5959..7875+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6671.17545.1 ID=mRNA_Ecto-sp13_S_contig6671.17545.1|Name=mRNA_Ecto-sp13_S_contig6671.17545.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1917bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6671:5959..7875+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTTGCCCTTACAGCTACGCACCACACGCCTACTGTGGAGTGCAACTCTG
TCCTGCCGCTGCCTCTGCCGCTGCCACTCCCGCTACGGGTTATACTGCTG
CTGCCGGTATGCGCGCCAAAGGAGCAGCGCTCCGTGCCTTGTGGTTGACC
GCCGCCGTCGCCACCGCCATCAGCGGTCCTCGTTCTTCGGCCAGCGCCAG
CACCGGTTCCTCGTCCTCGGCCTTCGTCGGAGCTGCCGCAGCAACCGTGG
CGCCACTGGAACCTTTCCGTGAGTACACCCCTTCGTGTTAAAGCGCTGTG
TGTTCTCTCCAGTATTACAGCAGTATTCCGTTTGAGGGTCCTTTGTCCAA
GCTGGTCTCTCTTGTGCGCTCGTCGTGCATTTTCCGTCGACAGCAACCCC
ATTTACACACGCGGTCCCAGCTGGAAGGGGTTTGACCGACCATGTGCACT
CCGGAAGCAGCGTCTCTCCGCAAACATCCGCAGCGAATTCAGCCACGTTT
CACGGGTAGCTGCTCTTGCCGTATCAGAAGTCGCAACACGCGCGGGATCA
GGAGAGTCTCTATAAAAGCCACAGGAAGATATTCTGCGTCGGAGTCTCCC
CGCTTTCTTCCCGATAACACGCGGGCGGCTCCGGGATGTTTGGGGCCGGC
AGGGGGATGCTGTACGACTCACACGTGGCGATCGACTGACACACATGAAC
GGTACGATTTCTTATCCTCACCTCTTCCGCGAAATGTTGCCGCAAACATG
CCGACGGGGCGTCTTTACTCCAAAATTATCAGATGGACTGCATATGCATA
CGTCGGACCTGCTGACCCGCTGGTTCCACTTGCCACACGCCATGTATGAC
AACCACCTGTGAAAGGATCGCGAACGCGTTATGCATACGGATGCCTCGAA
TCTTAACCCATTTAGTAATGCGATCCCAAATGGGCATACAGCATTCAAAT
GTCTGTTTACCGCACCGTAGTCTTCGCTATGCTCCGTGGTGTGAAACGCG
AGTGGGAAACCTTGGGTCTACGATGCTTCCGCCTTTGTGAGATGGTATGT
GGTGCGCATACGCTGGTGTGGTGTACCAGGTAGCCGTTTGACGCCCGTGT
GCCTCCTCAGCCTCTGACTTTCTGTACGCATATCTCCCAAGCCGCGTGTC
GCCTTGTCGGACAAGGTCTATATAGCGTAGTACTGGAAAAATTAAAATTT
GCTGAGTTGGCTTCAGAATGGAAAGTGTGGCGCATTTGTGAACACACTTT
TCCGGTCTAAAAAAGTTCAGCCTCGTCCATCGGAACTCTGCACACCCAAT
CCCAATGAGCGGACTCGTTTTGTTCATTTCTCTGGACCTGCCACCTGTGA
CTAGCTGGGTTCTCCAAGAGCTAACCTAGTGCCTTGCTTGCCTTGCAGAT
CAGCGCACGGGCCTGCCGTCAGAGCGTGACCGGCAAAATAACGGCGTCTA
CCACCGCCTATGCACTGTAGCTGCACCCCCCCTCGGTCCTCACGATCTCT
CCTGCCCTGTTTTTTCTGTGTGTCCGCTCGGCAGACGTGCGCGCGCCCCG
CTGGGGCGCGCGGTCCGGCCCCACGCCGAGAAGCAGCCCCTCTTCATCCT
CCTCGTCCTCCTCCTCGTCCATGTCGATGGCGTTCGCTTCTGCCGCCCGG
GAGACACAGCGGCAACAGAAGGACGACGACCTGCTGCAACGCCCGCACGC
GTCGCCTGTGGCCGCGGCGGTGGCTCCCAAGAACACGCTGCCGCTGATGG
GCAAGGCCCTGTTTGTGACGGGGGGAGGGGCGGGGGCGGGGGCGGCCGGG
AAAGGGGAGTCGGCGGGCTTCGGCGTGGCGAGCGCCTGGGGGGTGGTTTC
GGTGGTTTTCATCCTCATGAACGCCGTTAAGCGTCTGGCACCGATCGCCA
TGCAGCCGTTCTCGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6671:5959..7875+

>mRNA_Ecto-sp13_S_contig6671.17545.1 ID=mRNA_Ecto-sp13_S_contig6671.17545.1|Name=mRNA_Ecto-sp13_S_contig6671.17545.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=651bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6671:5959..7875+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTTGCCCTTACAGCTACGCACCACACGCCTACTGTGGAGTGCAACTCTG
TCCTGCCGCTGCCTCTGCCGCTGCCACTCCCGCTACGGGTTATACTGCTG
CTGCCGGTATGCGCGCCAAAGGAGCAGCGCTCCGTGCCTTGTGGTTGACC
GCCGCCGTCGCCACCGCCATCAGCGGTCCTCGTTCTTCGGCCAGCGCCAG
CACCGGTTCCTCGTCCTCGGCCTTCGTCGGAGCTGCCGCAGCAACCGTGG
CGCCACTGGAACCTTTCCACGTGCGCGCGCCCCGCTGGGGCGCGCGGTCC
GGCCCCACGCCGAGAAGCAGCCCCTCTTCATCCTCCTCGTCCTCCTCCTC
GTCCATGTCGATGGCGTTCGCTTCTGCCGCCCGGGAGACACAGCGGCAAC
AGAAGGACGACGACCTGCTGCAACGCCCGCACGCGTCGCCTGTGGCCGCG
GCGGTGGCTCCCAAGAACACGCTGCCGCTGATGGGCAAGGCCCTGTTTGT
GACGGGGGGAGGGGCGGGGGCGGGGGCGGCCGGGAAAGGGGAGTCGGCGG
GCTTCGGCGTGGCGAGCGCCTGGGGGGTGGTTTCGGTGGTTTTCATCCTC
ATGAACGCCGTTAAGCGTCTGGCACCGATCGCCATGCAGCCGTTCTCGAG
G
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