prot_Ecto-sp13_S_contig6554.17379.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6554.17379.1
Unique Nameprot_Ecto-sp13_S_contig6554.17379.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length240
Homology
BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: D7FHB9_ECTSI (RPOLD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB9_ECTSI)

HSP 1 Score: 471 bits (1211), Expect = 2.570e-167
Identity = 237/240 (98.75%), Postives = 237/240 (98.75%), Query Frame = 0
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQYEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM 240
            R  QVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQYEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLV SDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM
Sbjct:    5 RAPQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQYEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVSSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM 244          
BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: A0A835YK59_9STRA (Putative DNAdirected RNA polymerase II 36 kDa polypeptide A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK59_9STRA)

HSP 1 Score: 310 bits (795), Expect = 3.680e-103
Identity = 153/240 (63.75%), Postives = 192/240 (80.00%), Query Frame = 0
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQYEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM 240
            R  ++E+++L+ DFV+FVLS+TDTSVANALRRVMIAEVPTMAIDLVTI +NSS LQDEFL+HRLGL+PL  +PG ++ YN DCDCED C++CS   +LDVSW+ KA GRP+H +D PV VTS+DLV  DPR+  VHFA SD    D SQD GI++AKL++GQR+QLTAVAKKGIAKEHAKWSPV VATY+F+P+I++ ++  A LT  Q+ + VE CP KVYG DE++  I V +R  CM
Sbjct:    5 RAPKIEVLELKADFVKFVLSDTDTSVANALRRVMIAEVPTMAIDLVTITENSSALQDEFLAHRLGLVPLRCEPGTKFVYNLDCDCEDNCEQCSVTLSLDVSWESKAAGRPDHEKDLPVFVTSSDLVSHDPRVGPVHFASSDII--DASQDDGIMLAKLSRGQRLQLTAVAKKGIAKEHAKWSPVCVATYQFDPIIKVADDVSATLTVAQRQQVVESCPVKVYGLDERTNNIVVRNRLECM 242          
BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: A0A7S2Y381_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y381_9STRA)

HSP 1 Score: 261 bits (666), Expect = 2.450e-83
Identity = 132/242 (54.55%), Postives = 180/242 (74.38%), Query Frame = 0
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPG--VQYEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM 240
            RF +V++ +LR+D + F LS+TD SVANALRRVMIAE PT+AIDLVTI  N+SV+QDEFL+HRLGLIP+    G   ++ +NYDCDCEDYC +C+ +F+LDVS+D++A  RP+H  D P+ VTS DLV ++P ++AVHFA +D+     SQDAGI + KLA+GQ ++LTA+AK G  KEH+KW    VATY+++P+I++NEEK   L+ EQ  +  E CP  V+  DEK+G + V +R  CM
Sbjct:    6 RFPKVKVQELRDDCIRFELSDTDISVANALRRVMIAETPTLAIDLVTIETNTSVMQDEFLAHRLGLIPIRYHRGDVSKFRFNYDCDCEDYCHQCAVLFSLDVSFDQRAAMRPDHESDLPLTVTSQDLVSNNPDVQAVHFASADEQQQ--SQDAGIALLKLARGQAIKLTAIAKLGTQKEHSKWCTCCVATYQYDPIIKLNEEKLDQLSSEQVDQLAESCPVGVFEVDEKTGKLTVVNRMDCM 245          
BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: M4B1Q5_HYAAE (RPOLD domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B1Q5_HYAAE)

HSP 1 Score: 233 bits (595), Expect = 2.920e-73
Identity = 123/231 (53.25%), Postives = 163/231 (70.56%), Query Frame = 0
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQ-----YEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDE 226
            RF Q+EI +LR+DF+ F LS TD SVANA+RRVMIAEVPT+AIDLV+I  NSSV+ DEFL+HRLG+IPL  D G++     + Y+ DCDC++ C  CS  FTLDV+ D              V VT+  L  SDP +R V+F+  ++ N+  +QD+G+IIAKL  GQR++L+A+AK G+ KEHAKWSPVAVATY ++P+I +N+   +  TPEQKAE  + CP +VY  DE
Sbjct:    5 RFPQIEIQELRDDFIRFELSETDASVANAIRRVMIAEVPTLAIDLVSIEINSSVMTDEFLAHRLGMIPLNFDGGLENFSQRFVYSQDCDCDENCPNCSVEFTLDVTADSGV-----------VSVTTEALKSSDPYIRPVNFSSEEELNN--TQDSGVIIAKLGPGQRLRLSAIAKLGVGKEHAKWSPVAVATYMYDPIITLNQTVLSTYTPEQKAELYKCCPTEVYETDE 222          
BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: A0A8K1CE06_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CE06_PYTOL)

HSP 1 Score: 234 bits (596), Expect = 5.170e-73
Identity = 124/245 (50.61%), Postives = 169/245 (68.98%), Query Frame = 0
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQ-----YEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM 240
            RF ++E+V+LR+DF++F LS TD SVANA+RRVMIAEVPT+AIDLVTI  N+SV+ DEFL+HRLG+IPL  D G++     + Y+ DCDC+++C  CS  FTLDV  D+  L            VTS  L  +DP +R +HF+  ++ ++  +QD G+IIAKL  GQR++L+A+AK GI KEHAKWSPVAVAT+ +EP+I +N+     L+ +QKAE  + CPA+VY  DE    + V     CM
Sbjct:    5 RFPKIEVVELRDDFIKFELSETDASVANAIRRVMIAEVPTLAIDLVTIEANTSVMTDEFLAHRLGMIPLFFDGGLENFRQRFVYSQDCDCDEHCPNCSVEFTLDVVADQGVLT-----------VTSESLRSTDPYIRPMHFSSEEEFSN--TQDTGVIIAKLGPGQRIKLSAIAKLGIGKEHAKWSPVAVATFMYEPIITLNQAVMNTLSSDQKAELYKSCPAEVYDTDENYDQLTVGDAMRCM 236          
BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: G4YH09_PHYSP (RPOLD domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=G4YH09_PHYSP)

HSP 1 Score: 229 bits (585), Expect = 2.160e-72
Identity = 121/231 (52.38%), Postives = 163/231 (70.56%), Query Frame = 0
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQ-----YEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDE 226
            RF ++EI +LR+DF+ F LS TD SVANA+RRVMI+EVPT+AIDLV+I  N+SV+ DEFL+HRLG+IPL  D G++     + Y+ DCDC++ C  CS  F+LDV+ D   L            VTS  L  SDP +R V+F+  ++ N+  +QD+G+IIAKL  GQR++L+A+AK GI KEHAKWSPVAVATY ++P+I +N+   +  TPEQKAE  + CP +VY  DE
Sbjct:    5 RFPKIEIQELRDDFIRFELSETDASVANAIRRVMISEVPTLAIDLVSIEINTSVMTDEFLAHRLGMIPLNFDGGLENFRQRFVYSADCDCDENCPNCSVEFSLDVTADNGVLS-----------VTSEALKSSDPYIRPVNFSSEEELNN--TQDSGVIIAKLGPGQRLRLSAIAKLGIGKEHAKWSPVAVATYMYDPIITLNQAVLSTYTPEQKAELYKSCPTEVYETDE 222          
BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: K3W7V5_GLOUD (RPOLD domain-containing protein n=21 Tax=Oomycota TaxID=4762 RepID=K3W7V5_GLOUD)

HSP 1 Score: 229 bits (583), Expect = 4.880e-71
Identity = 123/245 (50.20%), Postives = 165/245 (67.35%), Query Frame = 0
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQ-----YEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM 240
            RF ++EI +LR+DF++F LS TD SVANA+RRVMI+EVPT+AIDLV+I  N+SV+ DEFL+HRLG+IPL  D G++     + Y+ DCDC+++C  CS  F LDV  D+  +            VTS  L   DP +R V+F+  ++ N+  +QD G+IIAKL  GQR++L+A+AK GI KEHAKWSPVAVAT+ +EP+I +N+   A  TPEQKAE  + CP +VY  DE      V     CM
Sbjct:    5 RFPKIEIQELRDDFIKFELSETDASVANAIRRVMISEVPTLAIDLVSIEVNTSVMTDEFLAHRLGMIPLYFDGGLENFRQRFVYSQDCDCDEHCPNCSVEFQLDVRADQGVMT-----------VTSEALKSLDPYIRPVNFSSEEELNN--TQDTGVIIAKLGPGQRLRLSAIAKLGIGKEHAKWSPVAVATFMYEPIITLNQAVLATYTPEQKAELYKSCPTEVYETDENYDQFTVGDSMRCM 236          
BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: A0A024G378_9STRA (RPOLD domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024G378_9STRA)

HSP 1 Score: 226 bits (577), Expect = 3.810e-70
Identity = 124/245 (50.61%), Postives = 164/245 (66.94%), Query Frame = 0
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQ-----YEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM 240
            +F +VEI+DLR+DF++F L  TD SVANALRRVMIAEVPT+AIDLVTI  N+SV+ DEFL+HRLG+IPL  D G++     + Y+ DCDCE++C  CS  F LDV  ++  L            VTS  L   DP +R V+F+  ++ N+  +QD G+IIAKL  GQ ++L+A+AK GI KEHAKWSPVAVAT+ +EP I +N+   +  TPEQKAE  + CP +VY  DE      + +   CM
Sbjct:    5 QFPKVEILDLRDDFIKFELFETDASVANALRRVMIAEVPTLAIDLVTIEINTSVMTDEFLAHRLGMIPLFFDGGLEAFRQRFVYSQDCDCEEHCPNCSVEFQLDVRAEQGMLS-----------VTSDALKSVDPYIRPVNFSSEEEFNN--TQDTGVIIAKLGPGQHIRLSAIAKLGIGKEHAKWSPVAVATFMYEPKITLNQAILSTYTPEQKAELYKSCPTEVYETDENYEQFTIANHMRCM 236          
BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: A0A067CJB5_SAPPC (RNA polymerase Rpb3/Rpb11 dimeriZation domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CJB5_SAPPC)

HSP 1 Score: 225 bits (573), Expect = 1.620e-69
Identity = 123/245 (50.20%), Postives = 166/245 (67.76%), Query Frame = 0
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQ-----YEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM 240
            RF +++I +LR+DF++F LS TDTSVAN++RRVMIAEVPT+AIDLV+I  N+SV+ DEFL+HRLG+IPLA D G++     + Y+ DCDC+++C  CS  F LDV        R E        VTS  L   DP +  VHF+  ++ N+  +QD+G+IIAKL  GQR++L A+AK GI KEHAKWSPVAVATY FEP+I +N++  +  T EQ+ E  + CP +V+  D+    I VE    CM
Sbjct:    5 RFPKIDIQELRDDFIKFELSETDTSVANSIRRVMIAEVPTLAIDLVSIEINTSVITDEFLAHRLGMIPLAFDGGLEGFKKRFVYSADCDCDEHCPHCSVEFELDV--------RAESGMQT---VTSQSLRSLDPYVHPVHFSSEEELNN--TQDSGVIIAKLGPGQRLKLNALAKLGIGKEHAKWSPVAVATYMFEPIITLNQKVLSTYTNEQRVELYKSCPTRVFEIDDTYDQIQVEDHMRCM 236          
BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: A0A662Y985_9STRA (RPOLD domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y985_9STRA)

HSP 1 Score: 223 bits (569), Expect = 2.200e-69
Identity = 126/257 (49.03%), Postives = 168/257 (65.37%), Query Frame = 0
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQ-----YEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVH-VTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAK-----------KGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM 240
            RF ++EI +LR+DF+ F LS TD SVANA+RRVMIAEVPT+AIDLV++  N+SV+ DEFL+HRLG+IPL  D G++     + Y+ DCDC++ C  CS  FTLDV            + DQ V  VTS  L  SDP +R V+F+  ++ N+  +QD+G+IIAKL  GQR++L+A+AK           +GI KEHAKWSPVAVATY +EP+I +N+   +  +PEQKAE  + CP +VY  DE      V     CM
Sbjct:    5 RFPKIEIQELRDDFIRFELSETDASVANAIRRVMIAEVPTLAIDLVSVEVNTSVMTDEFLAHRLGMIPLNFDGGLENFRQRFVYSQDCDCDENCPNCSVEFTLDV------------VADQGVKSVTSESLKSSDPYIRPVNFSSEEELNN--TQDSGVIIAKLGPGQRLRLSAIAKLVRSSVIRWVLQGIGKEHAKWSPVAVATYMYEPIITLNQAVLSTYSPEQKAELYKSCPTEVYETDENYEQFTVGDPMRCM 247          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHB9_ECTSI2.570e-16798.75RPOLD domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YK59_9STRA3.680e-10363.75Putative DNAdirected RNA polymerase II 36 kDa poly... [more]
A0A7S2Y381_9STRA2.450e-8354.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
M4B1Q5_HYAAE2.920e-7353.25RPOLD domain-containing protein n=1 Tax=Hyaloperon... [more]
A0A8K1CE06_PYTOL5.170e-7350.61Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
G4YH09_PHYSP2.160e-7252.38RPOLD domain-containing protein n=8 Tax=Phytophtho... [more]
K3W7V5_GLOUD4.880e-7150.20RPOLD domain-containing protein n=21 Tax=Oomycota ... [more]
A0A024G378_9STRA3.810e-7050.61RPOLD domain-containing protein n=2 Tax=Albugo Tax... [more]
A0A067CJB5_SAPPC1.620e-6950.20RNA polymerase Rpb3/Rpb11 dimeriZation domain-cont... [more]
A0A662Y985_9STRA2.200e-6949.03RPOLD domain-containing protein n=1 Tax=Nothophyto... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeSMARTSM00662rpoldneu2coord: 14..238
e-value: 8.4E-43
score: 158.2
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typePFAMPF01193RNA_pol_Lcoord: 16..202
e-value: 8.7E-12
score: 44.6
IPR011262DNA-directed RNA polymerase, insert domainPFAMPF01000RNA_pol_A_baccoord: 46..182
e-value: 6.5E-28
score: 97.3
NoneNo IPR availableGENE3D3.30.1360.270coord: 4..239
e-value: 8.5E-69
score: 233.9
NoneNo IPR availablePANTHERPTHR11800DNA-DIRECTED RNA POLYMERASEcoord: 4..229
IPR036643DNA-directed RNA polymerase, insert domain superfamilyGENE3D2.170.120.12coord: 40..179
e-value: 8.5E-69
score: 233.9
IPR036643DNA-directed RNA polymerase, insert domain superfamilySUPERFAMILY56553Insert subdomain of RNA polymerase alpha subunitcoord: 39..183
IPR001514DNA-directed RNA polymerase, 30-40kDa subunit, conserved sitePROSITEPS00446RNA_POL_D_30KDcoord: 28..68
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 4..235

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6554contigEcto-sp13_S_contig6554:2633..8117 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6554.17379.1mRNA_Ecto-sp13_S_contig6554.17379.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6554 2633..8117 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6554.17379.1 ID=prot_Ecto-sp13_S_contig6554.17379.1|Name=mRNA_Ecto-sp13_S_contig6554.17379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp
RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHD
NSSVLQDEFLSHRLGLIPLAADPGVQYEYNYDCDCEDYCDKCSAVFTLDV
SWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQD
AGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEE
KEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011263DNA-dir_RNA_pol_RpoA/D/Rpb3
IPR011262DNA-dir_RNA_pol_insert
IPR036643RNApol_insert_sf
IPR001514DNA-dir_RNA_pol_30-40kDasu_CS
IPR036603RBP11-like