mRNA_Ecto-sp13_S_contig6554.17379.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6554.17379.1
Unique NamemRNA_Ecto-sp13_S_contig6554.17379.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: D7FHB9_ECTSI (RPOLD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB9_ECTSI)

HSP 1 Score: 471 bits (1211), Expect = 2.570e-167
Identity = 237/240 (98.75%), Postives = 237/240 (98.75%), Query Frame = 1 
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQYEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM 720
            R  QVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQYEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLV SDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM
Sbjct:    5 RAPQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQYEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVSSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM 244
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BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: A0A835YK59_9STRA (Putative DNAdirected RNA polymerase II 36 kDa polypeptide A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK59_9STRA)

HSP 1 Score: 310 bits (795), Expect = 3.680e-103
Identity = 153/240 (63.75%), Postives = 192/240 (80.00%), Query Frame = 1 
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQYEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM 720
            R  ++E+++L+ DFV+FVLS+TDTSVANALRRVMIAEVPTMAIDLVTI +NSS LQDEFL+HRLGL+PL  +PG ++ YN DCDCED C++CS   +LDVSW+ KA GRP+H +D PV VTS+DLV  DPR+  VHFA SD    D SQD GI++AKL++GQR+QLTAVAKKGIAKEHAKWSPV VATY+F+P+I++ ++  A LT  Q+ + VE CP KVYG DE++  I V +R  CM
Sbjct:    5 RAPKIEVLELKADFVKFVLSDTDTSVANALRRVMIAEVPTMAIDLVTITENSSALQDEFLAHRLGLVPLRCEPGTKFVYNLDCDCEDNCEQCSVTLSLDVSWESKAAGRPDHEKDLPVFVTSSDLVSHDPRVGPVHFASSDII--DASQDDGIMLAKLSRGQRLQLTAVAKKGIAKEHAKWSPVCVATYQFDPIIKVADDVSATLTVAQRQQVVESCPVKVYGLDERTNNIVVRNRLECM 242
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BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: A0A7S2Y381_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y381_9STRA)

HSP 1 Score: 261 bits (666), Expect = 2.450e-83
Identity = 132/242 (54.55%), Postives = 180/242 (74.38%), Query Frame = 1 
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPG--VQYEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM 720
            RF +V++ +LR+D + F LS+TD SVANALRRVMIAE PT+AIDLVTI  N+SV+QDEFL+HRLGLIP+    G   ++ +NYDCDCEDYC +C+ +F+LDVS+D++A  RP+H  D P+ VTS DLV ++P ++AVHFA +D+     SQDAGI + KLA+GQ ++LTA+AK G  KEH+KW    VATY+++P+I++NEEK   L+ EQ  +  E CP  V+  DEK+G + V +R  CM
Sbjct:    6 RFPKVKVQELRDDCIRFELSDTDISVANALRRVMIAETPTLAIDLVTIETNTSVMQDEFLAHRLGLIPIRYHRGDVSKFRFNYDCDCEDYCHQCAVLFSLDVSFDQRAAMRPDHESDLPLTVTSQDLVSNNPDVQAVHFASADEQQQ--SQDAGIALLKLARGQAIKLTAIAKLGTQKEHSKWCTCCVATYQYDPIIKLNEEKLDQLSSEQVDQLAESCPVGVFEVDEKTGKLTVVNRMDCM 245
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BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: M4B1Q5_HYAAE (RPOLD domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B1Q5_HYAAE)

HSP 1 Score: 233 bits (595), Expect = 2.920e-73
Identity = 123/231 (53.25%), Postives = 163/231 (70.56%), Query Frame = 1 
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQ-----YEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDE 678
            RF Q+EI +LR+DF+ F LS TD SVANA+RRVMIAEVPT+AIDLV+I  NSSV+ DEFL+HRLG+IPL  D G++     + Y+ DCDC++ C  CS  FTLDV+ D              V VT+  L  SDP +R V+F+  ++ N+  +QD+G+IIAKL  GQR++L+A+AK G+ KEHAKWSPVAVATY ++P+I +N+   +  TPEQKAE  + CP +VY  DE
Sbjct:    5 RFPQIEIQELRDDFIRFELSETDASVANAIRRVMIAEVPTLAIDLVSIEINSSVMTDEFLAHRLGMIPLNFDGGLENFSQRFVYSQDCDCDENCPNCSVEFTLDVTADSGV-----------VSVTTEALKSSDPYIRPVNFSSEEELNN--TQDSGVIIAKLGPGQRLRLSAIAKLGVGKEHAKWSPVAVATYMYDPIITLNQTVLSTYTPEQKAELYKCCPTEVYETDE 222
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BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: A0A8K1CE06_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CE06_PYTOL)

HSP 1 Score: 234 bits (596), Expect = 5.170e-73
Identity = 124/245 (50.61%), Postives = 169/245 (68.98%), Query Frame = 1 
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQ-----YEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM 720
            RF ++E+V+LR+DF++F LS TD SVANA+RRVMIAEVPT+AIDLVTI  N+SV+ DEFL+HRLG+IPL  D G++     + Y+ DCDC+++C  CS  FTLDV  D+  L            VTS  L  +DP +R +HF+  ++ ++  +QD G+IIAKL  GQR++L+A+AK GI KEHAKWSPVAVAT+ +EP+I +N+     L+ +QKAE  + CPA+VY  DE    + V     CM
Sbjct:    5 RFPKIEVVELRDDFIKFELSETDASVANAIRRVMIAEVPTLAIDLVTIEANTSVMTDEFLAHRLGMIPLFFDGGLENFRQRFVYSQDCDCDEHCPNCSVEFTLDVVADQGVLT-----------VTSESLRSTDPYIRPMHFSSEEEFSN--TQDTGVIIAKLGPGQRIKLSAIAKLGIGKEHAKWSPVAVATFMYEPIITLNQAVMNTLSSDQKAELYKSCPAEVYDTDENYDQLTVGDAMRCM 236
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BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: G4YH09_PHYSP (RPOLD domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=G4YH09_PHYSP)

HSP 1 Score: 229 bits (585), Expect = 2.160e-72
Identity = 121/231 (52.38%), Postives = 163/231 (70.56%), Query Frame = 1 
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQ-----YEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDE 678
            RF ++EI +LR+DF+ F LS TD SVANA+RRVMI+EVPT+AIDLV+I  N+SV+ DEFL+HRLG+IPL  D G++     + Y+ DCDC++ C  CS  F+LDV+ D   L            VTS  L  SDP +R V+F+  ++ N+  +QD+G+IIAKL  GQR++L+A+AK GI KEHAKWSPVAVATY ++P+I +N+   +  TPEQKAE  + CP +VY  DE
Sbjct:    5 RFPKIEIQELRDDFIRFELSETDASVANAIRRVMISEVPTLAIDLVSIEINTSVMTDEFLAHRLGMIPLNFDGGLENFRQRFVYSADCDCDENCPNCSVEFSLDVTADNGVLS-----------VTSEALKSSDPYIRPVNFSSEEELNN--TQDSGVIIAKLGPGQRLRLSAIAKLGIGKEHAKWSPVAVATYMYDPIITLNQAVLSTYTPEQKAELYKSCPTEVYETDE 222
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BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: K3W7V5_GLOUD (RPOLD domain-containing protein n=21 Tax=Oomycota TaxID=4762 RepID=K3W7V5_GLOUD)

HSP 1 Score: 229 bits (583), Expect = 4.880e-71
Identity = 123/245 (50.20%), Postives = 165/245 (67.35%), Query Frame = 1 
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQ-----YEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM 720
            RF ++EI +LR+DF++F LS TD SVANA+RRVMI+EVPT+AIDLV+I  N+SV+ DEFL+HRLG+IPL  D G++     + Y+ DCDC+++C  CS  F LDV  D+  +            VTS  L   DP +R V+F+  ++ N+  +QD G+IIAKL  GQR++L+A+AK GI KEHAKWSPVAVAT+ +EP+I +N+   A  TPEQKAE  + CP +VY  DE      V     CM
Sbjct:    5 RFPKIEIQELRDDFIKFELSETDASVANAIRRVMISEVPTLAIDLVSIEVNTSVMTDEFLAHRLGMIPLYFDGGLENFRQRFVYSQDCDCDEHCPNCSVEFQLDVRADQGVMT-----------VTSEALKSLDPYIRPVNFSSEEELNN--TQDTGVIIAKLGPGQRLRLSAIAKLGIGKEHAKWSPVAVATFMYEPIITLNQAVLATYTPEQKAELYKSCPTEVYETDENYDQFTVGDSMRCM 236
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BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: A0A024G378_9STRA (RPOLD domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024G378_9STRA)

HSP 1 Score: 226 bits (577), Expect = 3.810e-70
Identity = 124/245 (50.61%), Postives = 164/245 (66.94%), Query Frame = 1 
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQ-----YEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM 720
            +F +VEI+DLR+DF++F L  TD SVANALRRVMIAEVPT+AIDLVTI  N+SV+ DEFL+HRLG+IPL  D G++     + Y+ DCDCE++C  CS  F LDV  ++  L            VTS  L   DP +R V+F+  ++ N+  +QD G+IIAKL  GQ ++L+A+AK GI KEHAKWSPVAVAT+ +EP I +N+   +  TPEQKAE  + CP +VY  DE      + +   CM
Sbjct:    5 QFPKVEILDLRDDFIKFELFETDASVANALRRVMIAEVPTLAIDLVTIEINTSVMTDEFLAHRLGMIPLFFDGGLEAFRQRFVYSQDCDCEEHCPNCSVEFQLDVRAEQGMLS-----------VTSDALKSVDPYIRPVNFSSEEEFNN--TQDTGVIIAKLGPGQHIRLSAIAKLGIGKEHAKWSPVAVATFMYEPKITLNQAILSTYTPEQKAELYKSCPTEVYETDENYEQFTIANHMRCM 236
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BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: A0A067CJB5_SAPPC (RNA polymerase Rpb3/Rpb11 dimeriZation domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CJB5_SAPPC)

HSP 1 Score: 225 bits (573), Expect = 1.620e-69
Identity = 123/245 (50.20%), Postives = 166/245 (67.76%), Query Frame = 1 
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQ-----YEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM 720
            RF +++I +LR+DF++F LS TDTSVAN++RRVMIAEVPT+AIDLV+I  N+SV+ DEFL+HRLG+IPLA D G++     + Y+ DCDC+++C  CS  F LDV        R E        VTS  L   DP +  VHF+  ++ N+  +QD+G+IIAKL  GQR++L A+AK GI KEHAKWSPVAVATY FEP+I +N++  +  T EQ+ E  + CP +V+  D+    I VE    CM
Sbjct:    5 RFPKIDIQELRDDFIKFELSETDTSVANSIRRVMIAEVPTLAIDLVSIEINTSVITDEFLAHRLGMIPLAFDGGLEGFKKRFVYSADCDCDEHCPHCSVEFELDV--------RAESGMQT---VTSQSLRSLDPYVHPVHFSSEEELNN--TQDSGVIIAKLGPGQRLKLNALAKLGIGKEHAKWSPVAVATYMFEPIITLNQKVLSTYTNEQRVELYKSCPTRVFEIDDTYDQIQVEDHMRCM 236
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Match: A0A662Y985_9STRA (RPOLD domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y985_9STRA)

HSP 1 Score: 223 bits (569), Expect = 2.200e-69
Identity = 126/257 (49.03%), Postives = 168/257 (65.37%), Query Frame = 1 
Query:    1 RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQ-----YEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVH-VTSADLVGSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAK-----------KGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM 720
            RF ++EI +LR+DF+ F LS TD SVANA+RRVMIAEVPT+AIDLV++  N+SV+ DEFL+HRLG+IPL  D G++     + Y+ DCDC++ C  CS  FTLDV            + DQ V  VTS  L  SDP +R V+F+  ++ N+  +QD+G+IIAKL  GQR++L+A+AK           +GI KEHAKWSPVAVATY +EP+I +N+   +  +PEQKAE  + CP +VY  DE      V     CM
Sbjct:    5 RFPKIEIQELRDDFIRFELSETDASVANAIRRVMIAEVPTLAIDLVSVEVNTSVMTDEFLAHRLGMIPLNFDGGLENFRQRFVYSQDCDCDENCPNCSVEFTLDV------------VADQGVKSVTSESLKSSDPYIRPVNFSSEEELNN--TQDSGVIIAKLGPGQRLRLSAIAKLVRSSVIRWVLQGIGKEHAKWSPVAVATYMYEPIITLNQAVLSTYSPEQKAELYKSCPTEVYETDENYEQFTVGDPMRCM 247
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6554.17379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHB9_ECTSI2.570e-16798.75RPOLD domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YK59_9STRA3.680e-10363.75Putative DNAdirected RNA polymerase II 36 kDa poly... [more]
A0A7S2Y381_9STRA2.450e-8354.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
M4B1Q5_HYAAE2.920e-7353.25RPOLD domain-containing protein n=1 Tax=Hyaloperon... [more]
A0A8K1CE06_PYTOL5.170e-7350.61Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
G4YH09_PHYSP2.160e-7252.38RPOLD domain-containing protein n=8 Tax=Phytophtho... [more]
K3W7V5_GLOUD4.880e-7150.20RPOLD domain-containing protein n=21 Tax=Oomycota ... [more]
A0A024G378_9STRA3.810e-7050.61RPOLD domain-containing protein n=2 Tax=Albugo Tax... [more]
A0A067CJB5_SAPPC1.620e-6950.20RNA polymerase Rpb3/Rpb11 dimeriZation domain-cont... [more]
A0A662Y985_9STRA2.200e-6949.03RPOLD domain-containing protein n=1 Tax=Nothophyto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6554contigEcto-sp13_S_contig6554:2633..8117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score471.1
Seed ortholog evalue3.1e-130
Seed eggNOG ortholog2880.D7FHB9
Preferred namePOLR2C
Model size720
KEGG rclassRC02795
KEGG koko:K01366,ko:K03011,ko:K07441,ko:K13457
KEGG ReactionR00435,R00441,R00442,R00443,R05970
KEGG Pathwayko00230,ko00240,ko00510,ko00513,ko01100,ko03020,ko04142,ko04210,ko04626,ko05016,ko05169,map00230,map00240,map00510,map00513,map01100,map03020,map04142,map04210,map04626,map05016,map05169
KEGG ModuleM00055,M00180
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000418,GO:0000419,GO:0000428,GO:0000785,GO:0000790,GO:0003002,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005694,GO:0005700,GO:0005703,GO:0005730,GO:0005737,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006366,GO:0006367,GO:0006368,GO:0006369,GO:0006370,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009266,GO:0009301,GO:0009408,GO:0009452,GO:0009628,GO:0009719,GO:0009791,GO:0009888,GO:0009987,GO:0010033,GO:0010374,GO:0010375,GO:0010467,GO:0010468,GO:0015630,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030880,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034605,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0042221,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0046483,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0090304,GO:0090558,GO:0097659,GO:0097747,GO:0098687,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons6
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0202@1,KOG1522@2759
Ec32 ortholog descriptionDNA-directed RNA polymerase, RBP11-like dimerisation domain
Ec32 orthologEc-03_004030.1
EC2.4.1.141,3.4.22.16
Cds size720
COG Functional cat.K
CAZyGT1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko01002,ko01003,ko03021,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6554.17379.1prot_Ecto-sp13_S_contig6554.17379.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6554 2633..8117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463903.711268-CDS-Ecto-sp13_S_contig6554:2632..27431681463903.711268-CDS-Ecto-sp13_S_contig6554:2632..2743Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6554 2633..2743 +
1681463903.7241898-CDS-Ecto-sp13_S_contig6554:3894..40261681463903.7241898-CDS-Ecto-sp13_S_contig6554:3894..4026Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6554 3895..4026 +
1681463903.733726-CDS-Ecto-sp13_S_contig6554:4705..48461681463903.733726-CDS-Ecto-sp13_S_contig6554:4705..4846Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6554 4706..4846 +
1681463903.7427657-CDS-Ecto-sp13_S_contig6554:5496..55931681463903.7427657-CDS-Ecto-sp13_S_contig6554:5496..5593Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6554 5497..5593 +
1681463903.7519343-CDS-Ecto-sp13_S_contig6554:6955..71341681463903.7519343-CDS-Ecto-sp13_S_contig6554:6955..7134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6554 6956..7134 +
1681463903.7617939-CDS-Ecto-sp13_S_contig6554:8057..81171681463903.7617939-CDS-Ecto-sp13_S_contig6554:8057..8117Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6554 8058..8117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6554.17379.1

>prot_Ecto-sp13_S_contig6554.17379.1 ID=prot_Ecto-sp13_S_contig6554.17379.1|Name=mRNA_Ecto-sp13_S_contig6554.17379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp
RFRQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHD
NSSVLQDEFLSHRLGLIPLAADPGVQYEYNYDCDCEDYCDKCSAVFTLDV
SWDKKALGRPEHMQDQPVHVTSADLVGSDPRLRAVHFAPSDQTNSDISQD
AGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEE
KEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCM
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mRNA from alignment at Ecto-sp13_S_contig6554:2633..8117+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6554.17379.1 ID=mRNA_Ecto-sp13_S_contig6554.17379.1|Name=mRNA_Ecto-sp13_S_contig6554.17379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5485bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6554:2633..8117+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTTTCCGCCAGGTGGAGATAGTGGACCTTCGTGAGGACTTCGTGGAATT
CGTGTTGTCCAATACGGACACTTCGGTGGCCAATGCCTTGAGACGAGTCA
TGATCGCCGAGGTGACTTTTGCCGACCTCATGTAGTATGATGGGTGATTG
ACGGAAACACTCCTAAAGTGGGGGTGAGGGAGGCGTACTCTCATGTTTAG
CATGCCTTAGCGGTCAGGTCGTTGACCACGTGTCCTCGAGAGGACTACAA
TAATGGGGGGGGGGGTCATGTGTACGGCATGGAGCGACACCTGTTGTAAG
TGGATTCGCTGGTTCGGATTTCTACCCAACAGGTTGTGATGGATGCCAGT
TAAGAAGCTTCCGGCGTCAAGGCGAAGCATGACTGCTGCTGTAAATATTT
GTTGATATGTCACGGAGGATTGTACCAATGTGCATTTCGAATCCATGCCA
TTTTTCCATCGTATTTCCTGAGCTATTTTCTTCCTTACCGTATTAACGTA
GTTTGAACAAGATTGCACAACCCCTTGGACCGATTTTCTAAGCTTGATTA
CTCTACGACGAAGACGATGCCGAAATTGCAGTTACGTTTCGGAAAGCTTT
CGAAGACACCGTTCCAACGCCGCCATTTTCGACACCGTCCCCACTTTCCG
TGCCGAGATATGTACTAGTGAATCGAGCTTCGAAAATCGGTCGATGGGGT
GCGATATCTAACGTCATGCAATCTACGGTATTCCCTTCCTTCGAAACCGT
CGTTTTGGCACCATCTTAGTGTCACTGATTGTGCCAGCGCTTACTCGTTG
CAGTCGAGCTAGTATCGAGGTACACCAACCGCCTATTATGGAGATTGCGC
TATGCGTACGGTCGGGTAGCAATGAGTGTTCTCGATCGGCACTTCGTTCA
TCGTCAACAAGCCACGCACCTTAACAGGCACCACGACTTCCAACAAGTTC
GGCGGACTCCACCATGAGCAACATTTTCGCCTGAGCTCTGGAAGCGAGCA
ACGGGACTTGTCAATTCTACGAAAATAACGCAGAAGGGGGCCACCGGACC
CTCCAATCCTACAAAAATGTCTTCGAAGGATCGCTATCATGGGCTTGCAA
TATTACTTTCACATGTCCCTCGTGCTGTATGCATGTTTTTGTACCCCGCC
TTAGGATCTCGATGATCAGCGGCACCCGATTTTCTTTCCTGACGTATCGC
GTGTTGCTTTCACGTATACGTTTTTTTTTTGGGTTTTTTTCGTAACGCTT
TTTCTTGTCCAGGTGCCGACGATGGCGATCGACCTGGTGACTATCCACGA
TAACTCGAGCGTCCTCCAAGACGAGTTCCTATCCCACCGCCTCGGGCTCA
TCCCCCTCGCGGCAGACCCGGGGGTGCAGTACGAGTACAACTACGTGAGA
CCTGTGCATACCTGCTTCGTGCTGATCTGCAGGCCCCCCTTTATTTTGGC
GCGCGTTTACTTGTTATTTTCCGTGCGCAAGGCCTACTGCTACTACCAAG
AACGTAAATCGATCGCTTTCTTCGCGATCCGAAAATGTATCCTTTGATTT
TGGCATCCTCTTCGTCGTGGAGTAATCGAGTTTTGAAAATTCAGCAAAGG
GGTGTGATACCTTATGTCATGCAGCCTGCGGCAACTGGATGCATTGGTTG
ACGTCGGCGCGGTGAGCTGTTCGTGGATTCGAGGGATGGGGAGGCACGTT
GAGAACTGCGGCATTCCCGCTGCCTCTGCCGCTGCTCTGTCGCAAGATTC
GAGCCTCCTCTCCCTCGTTTTGTTCTCTTCTTTTAGATTGTTCTCCTTTA
TGCGGACGGGCAGCAACTTTCGAGGAGCATGTTTGTGACGCCAGAATAGA
AGAGACGAAGAAAAAAACAGCCCGCTCTTCGATTACCCTTCTTCGTGCGG
CACGCGTAGATATGAAGTCGCGCTGGTGCTGCGGCTGCTGCTTCTGCTGC
CGTTTGTGCTCCTCAACGCTGGTGATGTTAGCATAGTACCGTGAAATCTG
GTAGTAGTTCTTTTTTTTTCCGTGCTGTCGTACACCATGAATTTGCCGTT
GTTTTTTCCGCTTGACCGTCCAGGATTGCGACTGCGAAGACTACTGCGAC
AAGTGCTCGGCCGTGTTCACGCTGGACGTGTCGTGGGACAAGAAGGCCTT
GGGGAGGCCGGAGCACATGCAGGACCAGCCCGTGCACGTCACCTCGGCGG
ACCTCGTCGGCTCTGTAAGCGCGGCCTCCTTGCTGTGTATGCGGTGTTGA
AAAAACGTTTTCTCTGGGGTGCGCCGCACTCGGCGGCGGTCTCCTGTGGT
ACTATTTAGACTGTTTACAGACATGTAACATCAGGAAAAATATGTACAAA
CATAGAAAGAGTACCCATTCGAGATATAACCACTGTCGAACGGGATGTGT
TGAAGCTTAGCAGTGAGTGGAGGGAAACTAGCTCGATACTGGGCTTATTT
CGAGTCTGTACGCTGATGATTTTTGGTACACATGTACTTTCTGGTTCGTC
GGGCTGTTCGAGTCAAGAGCACGTGACCTGCGTGAGCTGTTGAGCTTGGG
AAACGTCGCACGGTAGCTGTCAGTCGGATGTGGGTTGGGTTGGTACTGCT
GCCTGCGTTAATTTTCATGTTGCATCGCCCCATGATGACACTGTTGTGCT
CTCGTGAGCCCACTCCCAAGGCGTCACTCTTACGTCTATAATGTGTAAAA
AAGGCCTTGGAGCCCCCCCGCCACCGAAGAAAGTTGTTATACTTCTTGGC
ACTAAGCTTCCAGCATCTGTTCACGTTCGTTATCGGTAGTGCTCATGTAC
AAGATCCACCCCGCCGCTCGTTGCGGCTATGGTCGACGTCATTGTTGTTG
TTGTTGATGCGCAGGACCCTCGATTGCGGGCGGTGCACTTCGCCCCCTCG
GATCAGACCAACAGTGACATCTCCCAGGACGCAGGGATCATCATCGCAAA
GCTCGCCAAAGGTGACGGACTGCTGGCTATACCTCGCGAAGCTTGTCTAC
AATGCTTGTCTACAATGTACTATAGAGAGGTAGGGGCTCCACGGACCCTG
CAATCGTAGCCCCCGAAATTCCACCGATATCATTCTCTATCCTTTATGTT
TGCTTAGTAGAAACCCTCGTAGGCTACTGAAGGGGATCGACGATCTCGTG
GTGTCGAGTCATACAGAATCGAATGCGAAAATATGTTTCTGCATATGCTA
CACCTACATGCTTGTGATTTTGTGCTCGCTGGGATCACTGATCTCAATGT
TAAAAGCGTAAACAGACTGAAACATCACCAACACCCAGCAGGGTTTTCCC
AACACTCACCATGAGGACTTCAACATATTCCTATTGGGGGATAATTTCGG
ATGGGTAGTCATTCAGCGGTGGTGTCTGCTTTTTCTCAGCAAAGGGTACA
CGCGGAATCCCAATAGATATAAACGCTCCGCTCTTCACACATAGCCGGGG
GCATGCAGCCTAGGGAGAAAACATTTGTGATGCCCTCTTGTTGCTGTCGT
GAACTACTTTGTTTTCATACACCGGCGGTGCAATGCGCGTCCGAAGAGAT
AGCATCGGGTACATCCGGGAGCCTGTCATCGTCGACCTTACCCTGTATTT
TGCGGTGCCCCCTCCACCGCCCCTCCTCGAACGCAATCGAAAGATGCACG
TTACTGCCATAGCAACAGAAAACAACTATGCATACGATACCATCGCGTAC
AACGCTTAGTTGACTCGTTTCAGGGCAGACCGCATGTACAATGTAAATGA
AAAACGGAAAACAATTGATTGACTCTTTTCAGCGAAGACAAGCAAACATA
CACGTAAAAACGGGAAAAAACTTGATTTATTCCTTTCAATCCATACACAT
ACAACACATCAGGAAAACGCTTGACTGGACCCTTTCAGGGCAGACGCGCG
TATGGATGCGTAGTTAAACGGAAATGCTTGATTTTACTCCTCTTGAGGGC
AGACACGCATGCACATAAAACGGGAACACGCTTGATTTGGTGCTTTCAGG
GCAGACAAGCGTACCCGTCAAATCGGGAAGATGCTTGGTTGATTCCTTTC
AATCCGGATACGCGAACGCGTACACAAACAAAACCGGGAAAACGCTTGAC
TGACCCCTTTCAGGGTAGACGCGAACATGGATGCGTAGTACAGCTCAACG
AACACGCTTGATTTGACTTGTACAGGGCAAACAAGCATACACGTAACATT
GACTTTGTTCAACGCATAAACAAACAAATCGGGAAAATGCTTGACTGACC
CCCTTTCAGGGCAGACGCGAAGAGGGATGCGTACAATTATAACGAAATAG
CGCTTGATTTGACTCCTCTTCAGGGCAGCGCATGCAGCTGACGGCGGTGG
CGAAGAAGGGCATCGCGAAGGAGCACGCCAAGTGGTCCCCCGTGGCGGTG
GCCACCTACAAGTTCGAGCCCGTCATAGAGATCAACGAGGAGAAGGAGGC
GTTGCTCACGCCGGAGCAGAAGGCGGAGTTCGTAGAGATTTGCCCAGCGA
AGGTGAGTGAGTGAAGTTGCTGAGCTAGAGAGAAACAACACGCGGTGGCA
AAGCAAAGCACGTGCATGTTTATACACTCGAAATAAGCCCGGTACCAAGC
CGGTTTCCCTCCATTCACTGCAAAGACTCCAACACACCCCGTTCGACAGT
GGTTACGTCTCGAATGGGTAGTATTTCTGTGTTTGTATTTATTTCTCAAG
ATGCATACACATGTAGGTGGTTTCTTTTTCATGTTGCTTTTATGAAGCCT
GGACGAGCGGAGGGCCCGGAGAGTCATGGCTGTGACCTACCACCTGATGC
GCACCATTTCCTTTTGGGGGGGAATCCTCCGACACTGCCGCTCGTCCGGG
TTTTTTTCATTCTTTCCACGACAACACCTGTTCCGAGTCTTGAGTCATCT
CCTCGCCTGGCGGGATGGTTCGCCACGGGTAGTAGGCATGGCAAAGCTTG
CATTTTGGGTCTATTGGCCGTCGGGATGGGAGGACGGGGTGTCGGCGTGG
CAGTCTTCGGTTCTAAGCCCTTTCCGTCCAATATGTCAGCTTCGTCTGTG
GTTTTACCGCTGTAGCCCCCTTTCACCACTTGAGTGTCGAAGCTTTCGGG
AGGTCGTCACCTGGGAGTGTTTTTTACTTCGGAGTCGTCCATGTCTTGAC
ACTTGTTTGCTTTTTCTTAGGGGATGAGCCTATCAATGAGCGCGAGGAAA
ATGCGACGATCGCATTCGTCCGATCAACATCATTCGTCCCCCTTTTGAGA
GTCATTTTGTTTGTGTTTGTGCAGAGAACGCAGCAGCAGTATCATCAGTT
GAGCCCATCCGTTGTTAGGTGATATGTTTTTACGGTGGATGAAGGTTTGT
TCACCGTTTCGCCTATTTCAGCGTTCCGTTATTTGTTGTTGTTGCACCGC
GTCATCGTTGTTTCTCTCTTGACAGGTGTACGGGCGCGATGAAAAGAGCG
GCACGATCTTCGTCGAGCACAGAGATATGTGCATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6554:2633..8117+

>mRNA_Ecto-sp13_S_contig6554.17379.1 ID=mRNA_Ecto-sp13_S_contig6554.17379.1|Name=mRNA_Ecto-sp13_S_contig6554.17379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6554:2633..8117+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTTTCCGCCAGGTGGAGATAGTGGACCTTCGTGAGGACTTCGTGGAATT
CGTGTTGTCCAATACGGACACTTCGGTGGCCAATGCCTTGAGACGAGTCA
TGATCGCCGAGGTGCCGACGATGGCGATCGACCTGGTGACTATCCACGAT
AACTCGAGCGTCCTCCAAGACGAGTTCCTATCCCACCGCCTCGGGCTCAT
CCCCCTCGCGGCAGACCCGGGGGTGCAGTACGAGTACAACTACGATTGCG
ACTGCGAAGACTACTGCGACAAGTGCTCGGCCGTGTTCACGCTGGACGTG
TCGTGGGACAAGAAGGCCTTGGGGAGGCCGGAGCACATGCAGGACCAGCC
CGTGCACGTCACCTCGGCGGACCTCGTCGGCTCTGACCCTCGATTGCGGG
CGGTGCACTTCGCCCCCTCGGATCAGACCAACAGTGACATCTCCCAGGAC
GCAGGGATCATCATCGCAAAGCTCGCCAAAGGGCAGCGCATGCAGCTGAC
GGCGGTGGCGAAGAAGGGCATCGCGAAGGAGCACGCCAAGTGGTCCCCCG
TGGCGGTGGCCACCTACAAGTTCGAGCCCGTCATAGAGATCAACGAGGAG
AAGGAGGCGTTGCTCACGCCGGAGCAGAAGGCGGAGTTCGTAGAGATTTG
CCCAGCGAAGGTGTACGGGCGCGATGAAAAGAGCGGCACGATCTTCGTCG
AGCACAGAGATATGTGCATG
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