prot_Ecto-sp13_S_contig6534.17347.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig6534.17347.1
Unique Name	prot_Ecto-sp13_S_contig6534.17347.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	145

Homology

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BLAST of mRNA_Ecto-sp13_S_contig6534.17347.1 vs. uniprot
Match: D8LTD5_ECTSI (Polyadenylate-binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD5_ECTSI)

HSP 1 Score: 275 bits (704), Expect = 1.150e-86
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0

Query:    8 QVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 144
            QVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV
Sbjct:   64 QVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 200

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BLAST of mRNA_Ecto-sp13_S_contig6534.17347.1 vs. uniprot
Match: A0A835YVH9_9STRA (Polyadenylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH9_9STRA)

HSP 1 Score: 250 bits (638), Expect = 4.620e-77
Identity = 121/137 (88.32%), Postives = 128/137 (93.43%), Query Frame = 0

Query:    8 QVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 144
            QVGPVASIRVCRDT+TRRSLGYAYVNFHNVADAERALDTMNFT IKD  CRIMWSQRDPS+RRSGVGN+FVKNLDET+DNKALYDTFSLFGNILSCKVATDDAG SKGYGYVHYE   SAN AIAKI+GM++ GKQV
Sbjct:   85 QVGPVASIRVCRDTITRRSLGYAYVNFHNVADAERALDTMNFTLIKDNPCRIMWSQRDPSMRRSGVGNVFVKNLDETIDNKALYDTFSLFGNILSCKVATDDAGNSKGYGYVHYETAESANEAIAKIDGMVVGGKQV 221

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BLAST of mRNA_Ecto-sp13_S_contig6534.17347.1 vs. uniprot
Match: A0A6A5AH64_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AH64_9STRA)

HSP 1 Score: 225 bits (573), Expect = 1.540e-72
Identity = 111/136 (81.62%), Postives = 121/136 (88.97%), Query Frame = 0

Query:    9 VGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 144
            VGPVASIRVCRD VTRRSLGYAYVNFHNV+DAERALDTMN+T+IK   CRIMWSQRDP+LR+SGVGNIFVKNLD ++DNKALYDTFSLFGNILSCKVA D  G SKGYGYVHYE   +A +AI KINGMLIAG +V
Sbjct:   58 VGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERALDTMNYTSIKSVPCRIMWSQRDPTLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAYDLNGNSKGYGYVHYETAEAAYLAIEKINGMLIAGTEV 193

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BLAST of mRNA_Ecto-sp13_S_contig6534.17347.1 vs. uniprot
Match: A0A2D4BDJ5_PYTIN (Polyadenylate-binding protein n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BDJ5_PYTIN)

HSP 1 Score: 232 bits (592), Expect = 1.210e-70
Identity = 116/136 (85.29%), Postives = 122/136 (89.71%), Query Frame = 0

Query:    9 VGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 144
            VGPVASIRVCRD VTRRSLGYAYVNFHNVADAERALDTMNFT+IK   CRIMWSQRDPSLR+SGVGNIFVKNLD ++DNKALYDTFSLFGNILSCKVA D  G SKGYGYVHYE   +AN AIAKINGMLIAG +V
Sbjct:   51 VGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTMNFTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDINGNSKGYGYVHYETAEAANEAIAKINGMLIAGTEV 186

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BLAST of mRNA_Ecto-sp13_S_contig6534.17347.1 vs. uniprot
Match: A0A7R9WA81_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WA81_9STRA)

HSP 1 Score: 223 bits (568), Expect = 1.790e-70
Identity = 110/137 (80.29%), Postives = 122/137 (89.05%), Query Frame = 0

Query:    9 VGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKVATD-DAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 144
            VGPV+SIRVCRD VTRRSLGYAYVNFH VADAERALDTMNFTTIKD+ CRIMWSQRDPS+RRS VGNIFVKNL E++DNK LYDTFSLFGNILSCKV TD D+G+SKGYGYVHYE   +A  AI K++GMLI G++V
Sbjct:   80 VGPVSSIRVCRDAVTRRSLGYAYVNFHQVADAERALDTMNFTTIKDRPCRIMWSQRDPSIRRSNVGNIFVKNLHESIDNKQLYDTFSLFGNILSCKVVTDRDSGKSKGYGYVHYETAEAAQAAIEKLDGMLIDGQEV 216

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BLAST of mRNA_Ecto-sp13_S_contig6534.17347.1 vs. uniprot
Match: A0A7J6RF44_PEROL (Protein phosphatase PP2A regulatory subunit B n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6RF44_PEROL)

HSP 1 Score: 218 bits (554), Expect = 1.590e-69
Identity = 103/136 (75.74%), Postives = 121/136 (88.97%), Query Frame = 0

Query:    9 VGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 144
            VGPVASIRVCRD+VTRRSLGYAYVNFHNVADAERALDT+N++ I+ + CRIMWS RDP+LR+SG  N+FVKNLD+T+DNKALYDTFSLFGNILSCKVATDD G+S+GYG+VH+E   SA  AI+K+NGM+I  K V
Sbjct:   64 VGPVASIRVCRDSVTRRSLGYAYVNFHNVADAERALDTLNYSPIRGKQCRIMWSHRDPTLRKSGNANVFVKNLDKTIDNKALYDTFSLFGNILSCKVATDDDGKSRGYGFVHFENDESAQKAISKLNGMMIGDKAV 199

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BLAST of mRNA_Ecto-sp13_S_contig6534.17347.1 vs. uniprot
Match: K3X8Z0_GLOUD (Polyadenylate-binding protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X8Z0_GLOUD)

HSP 1 Score: 228 bits (580), Expect = 7.550e-69
Identity = 115/137 (83.94%), Postives = 123/137 (89.78%), Query Frame = 0

Query:    9 VGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKVATDDA-GESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 144
            VGPVASIRVCRD VTRRSLGYAYVNFHNVADAERALDTMNFT+IK   CRIMWSQRDPSLR+SGVGNIFVKNLD ++DNKALYDTFSLFGNILSCKVA D+  G SKGYGYVHYE   +A+ AIAKINGMLIAG +V
Sbjct:   55 VGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTMNFTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDNTTGASKGYGYVHYETAEAAHEAIAKINGMLIAGTEV 191

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BLAST of mRNA_Ecto-sp13_S_contig6534.17347.1 vs. uniprot
Match: A0A067BXY4_SAPPC (Polyadenylate-binding protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BXY4_SAPPC)

HSP 1 Score: 227 bits (579), Expect = 8.910e-69
Identity = 114/137 (83.21%), Postives = 124/137 (90.51%), Query Frame = 0

Query:    9 VGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKVATDD-AGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 144
            VGPVASIRVCRD VTRRSLGYAYVNFHNV+DAERALDTMN+T+IK   CRIMWSQRDPSLR+SGVGNIFVKNLD ++DNKALYDTFSLFGNILSCKVA D+ +G SKGYGYVHYE   +AN AIAKINGMLIAG +V
Sbjct:   54 VGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERALDTMNYTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDVSIDNKALYDTFSLFGNILSCKVAIDNTSGGSKGYGYVHYETAEAANEAIAKINGMLIAGSEV 190

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BLAST of mRNA_Ecto-sp13_S_contig6534.17347.1 vs. uniprot
Match: D0RMB6_PHYIT (Polyadenylate-binding protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0RMB6_PHYIT)

HSP 1 Score: 226 bits (577), Expect = 8.930e-69
Identity = 114/142 (80.28%), Postives = 123/142 (86.62%), Query Frame = 0

Query:    4 FSVGQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKVATDDA-GESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 144
            + +  VGPVASIRVCRD VTRRSLGYAYVNFHNVADAERALDTMNFT+IK   CRIMWSQRDPSLR+SGVGNIFVKNLD ++DNKALYDTFSLFGNILSCKVA +   G SKGYGYVHYE   +A  AIAKINGMLIAG +V
Sbjct:    9 YKIKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTMNFTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEAIAKINGMLIAGTEV 150

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BLAST of mRNA_Ecto-sp13_S_contig6534.17347.1 vs. uniprot
Match: A0A7S2V0G2_9STRA (Polyadenylate-binding protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0G2_9STRA)

HSP 1 Score: 227 bits (578), Expect = 1.760e-68
Identity = 118/140 (84.29%), Postives = 124/140 (88.57%), Query Frame = 0

Query:    9 VGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKV--ATDD--AGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 144
            VGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMN+T IK   CRIMWSQRDPSLRRSGVGNIFVKNLD +VDNKALYDTFSLFGNILSCKV  A DD  + E +GYGYVHYE   +AN AIAKINGMLIAGK+V
Sbjct:   38 VGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNYTLIKGVPCRIMWSQRDPSLRRSGVGNIFVKNLDPSVDNKALYDTFSLFGNILSCKVVVAKDDQVSDEEQGYGYVHYETAEAANEAIAKINGMLIAGKEV 177

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig6534.17347.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig6534.17347.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LTD5_ECTSI	1.150e-86	100.00	Polyadenylate-binding protein n=2 Tax=Ectocarpus T...	[more]
A0A835YVH9_9STRA	4.620e-77	88.32	Polyadenylate-binding protein n=1 Tax=Tribonema mi...	[more]
A0A6A5AH64_9STRA	1.540e-72	81.62	Uncharacterized protein (Fragment) n=1 Tax=Aphanom...	[more]
A0A2D4BDJ5_PYTIN	1.210e-70	85.29	Polyadenylate-binding protein n=2 Tax=Pythium TaxI...	[more]
A0A7R9WA81_9STRA	1.790e-70	80.29	Hypothetical protein (Fragment) n=1 Tax=Pseudictyo...	[more]
A0A7J6RF44_PEROL	1.590e-69	75.74	Protein phosphatase PP2A regulatory subunit B n=3 ...	[more]
K3X8Z0_GLOUD	7.550e-69	83.94	Polyadenylate-binding protein n=2 Tax=Pythiaceae T...	[more]
A0A067BXY4_SAPPC	8.910e-69	83.21	Polyadenylate-binding protein n=4 Tax=Saprolegniac...	[more]
D0RMB6_PHYIT	8.930e-69	80.28	Polyadenylate-binding protein n=1 Tax=Phytophthora...	[more]
A0A7S2V0G2_9STRA	1.760e-68	84.29	Polyadenylate-binding protein n=2 Tax=Fibrocapsa j...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 2..60 e-value: 0.015 score: 22.9 coord: 75..145 e-value: 4.1E-13 score: 59.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 7..57 e-value: 3.2E-12 score: 46.1 coord: 76..144 e-value: 1.7E-16 score: 59.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..64 score: 11.759
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 74..145 score: 15.699
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 75..145 e-value: 3.7E-18 score: 67.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..72 e-value: 2.7E-15 score: 58.6
None	No IPR available	PANTHER	PTHR24012:SF409	POLYADENYLATE-BINDING PROTEIN 1	coord: 9..141
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 9..141
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 7..144

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig6534	contig	Ecto-sp13_S_contig6534:6628..7814 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig6534.17347.1	mRNA_Ecto-sp13_S_contig6534.17347.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig6534 6628..7814 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig6534.17347.1 ID=prot_Ecto-sp13_S_contig6534.17347.1|Name=mRNA_Ecto-sp13_S_contig6534.17347.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
MFPFSVGQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFT
TIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNI
LSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQVI

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf