prot_Ecto-sp13_S_contig65173.17323.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig65173.17323.1
Unique Name	prot_Ecto-sp13_S_contig65173.17323.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	170

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: A0A1L2F1V5_9PHAE (Photosystem I assembly protein Ycf3 n=58 Tax=Phaeophyceae TaxID=2870 RepID=A0A1L2F1V5_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 9.220e-87
Identity = 161/168 (95.83%), Postives = 165/168 (98.21%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGRLS 168
            MSRSQRNDNFIDKTFTI+ADIILKVFPASKEEK+AFFYY+DGMSAQSEGEYAEALENYYEALQLEEDPYDRS XXXXXXXXXXXXXXXXXXXXXXXXXXX N NLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQA+NLAPNNYIEAQNWLRTTGRLS
Sbjct:    1 MSRSQRNDNFIDKTFTIVADIILKVFPASKEEKEAFFYYKDGMSAQSEGEYAEALENYYEALQLEEDPYDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAINLAPNNYIEAQNWLRTTGRLS 168

[Close]

BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: A0A7S6U9V8_9STRA (Photosystem I assembly protein Ycf3 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V8_9STRA)

HSP 1 Score: 243 bits (619), Expect = 8.740e-80
Identity = 147/166 (88.55%), Postives = 161/166 (96.99%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGR 166
            M+RSQ+NDNFIDKTFT+MADI+LKVFPASKEEK+AFFYYRDGMSAQSEGEYAEALENYYEALQ+EEDP DRSXXXXXXXXXXXXXXXXXXXXXXXXXXX LN NLPQALNNIAVIYHYQG+KASEKQNID+AK+LF++A++YWKQA+ LAPNNYIEAQNWL TTGR
Sbjct:    1 MARSQKNDNFIDKTFTVMADILLKVFPASKEEKEAFFYYRDGMSAQSEGEYAEALENYYEALQIEEDPKDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXELNTNLPQALNNIAVIYHYQGIKASEKQNIDIAKILFSRASQYWKQAITLAPNNYIEAQNWLSTTGR 166

[Close]

BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: A0A023HBL3_9STRA (Photosystem I assembly protein Ycf3 n=10 Tax=Ochrophyta TaxID=2696291 RepID=A0A023HBL3_9STRA)

HSP 1 Score: 241 bits (616), Expect = 3.060e-79
Identity = 146/168 (86.90%), Postives = 160/168 (95.24%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGRLS 168
            M RSQRNDNFIDKTFTI+ADI+LK+ PASK+EKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQALNNIAVIYHYQGVKAS+K+N+++AK LF+KAAEYWKQA+ LAPNNYIEAQNWL+TTGR++
Sbjct:    1 MGRSQRNDNFIDKTFTIVADILLKILPASKQEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNLNLPQALNNIAVIYHYQGVKASKKKNLEIAKGLFDKAAEYWKQAIKLAPNNYIEAQNWLKTTGRIT 168

[Close]

BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: B2XT84_HETAK (Photosystem I assembly protein Ycf3 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT84_HETAK)

HSP 1 Score: 239 bits (610), Expect = 2.350e-78
Identity = 143/169 (84.62%), Postives = 158/169 (93.49%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGRLSI 169
            M RSQRNDNFIDKTFT+MADI+LKVFPASKEEK+AFFYYRDGMSAQSEGEYAEALENYYEALQ+EEDPYDR   XXXXXXXXXXXXXXXXXXXXXXXXX LN NLPQALNNIAVIYHYQG+KA++KQN++VA+  F+KAAEYWKQA+ LAP NYIEAQNWL+TTGR ++
Sbjct:    1 MGRSQRNDNFIDKTFTVMADILLKVFPASKEEKEAFFYYRDGMSAQSEGEYAEALENYYEALQIEEDPYDRGFIXXXXXXXXXXXXXXXXXXXXXXXXXALNSNLPQALNNIAVIYHYQGMKATKKQNVEVAREFFDKAAEYWKQAITLAPTNYIEAQNWLKTTGRTNL 169

[Close]

BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: A0A516ZA68_9STRA (Photosystem I assembly protein Ycf3 n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZA68_9STRA)

HSP 1 Score: 238 bits (606), Expect = 9.860e-78
Identity = 143/168 (85.12%), Postives = 158/168 (94.05%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGRLS 168
            M R Q+NDNFIDKTFTI+ADI+LKVFPASK+EKQAFFYYR+GMSAQSEGEYAEALENYYEALQ+EEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQALNNIAVIYHYQG+KASE +N++VAK LF+KA EYW+QA+ LAPNNYIEAQNWL+TTGR+S
Sbjct:    1 MGRIQKNDNFIDKTFTIIADILLKVFPASKQEKQAFFYYREGMSAQSEGEYAEALENYYEALQIEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHYQGIKASEVENLEVAKTLFDKAGEYWQQAIKLAPNNYIEAQNWLKTTGRMS 168

[Close]

BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: B7T1Q9_VAULI (Photosystem I assembly protein Ycf3 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1Q9_VAULI)

HSP 1 Score: 236 bits (603), Expect = 2.920e-77
Identity = 145/169 (85.80%), Postives = 163/169 (96.45%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGRLSI 169
            M + QRNDNFIDKTFTIMADI+LKVFPASKEEKQAFFYY+DGMSAQS+GEYAEALE+YYEALQ+EEDPYDRS XXXXXXXXXXXXXXXXXXXXXXXXXXXLN +L QALNNIAVIYHYQG+KA EKQN++VA+LLF+KAAEYWKQA+NLAPNNYIEA+NWL+TTGR+++
Sbjct:    1 MVKIQRNDNFIDKTFTIMADILLKVFPASKEEKQAFFYYKDGMSAQSDGEYAEALEDYYEALQMEEDPYDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXLNSSLMQALNNIAVIYHYQGIKAFEKQNLEVAQLLFDKAAEYWKQAINLAPNNYIEARNWLQTTGRITM 169

[Close]

BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: A0A1C9CCZ3_9RHOD (Photosystem I assembly protein Ycf3 n=8 Tax=Rhodophyta TaxID=2763 RepID=A0A1C9CCZ3_9RHOD)

HSP 1 Score: 233 bits (593), Expect = 8.500e-76
Identity = 137/168 (81.55%), Postives = 152/168 (90.48%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGRLS 168
            M RSQRNDNFIDKTFT++ADI+LK+ PASKEEK+AF YYRDGMSAQ+EGEYAEALENYYEAL+LEEDPYDRS      XXXXXXXXXXXXXXXXXXXXXXLN  LPQALNNIAVIYHYQG+KAS K N + AK++F+KAA+YWKQAV LAPNNYIEAQNWL+TTGRL+
Sbjct:    1 MPRSQRNDNFIDKTFTVLADIVLKILPASKEEKEAFSYYRDGMSAQTEGEYAEALENYYEALRLEEDPYDRSYILYNIXXXXXXXXXXXXXXXXXXXXXXLNSKLPQALNNIAVIYHYQGIKASRKNNFETAKIMFDKAADYWKQAVQLAPNNYIEAQNWLKTTGRLN 168

[Close]

BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: J9QSV9_9STRA (Photosystem I assembly protein Ycf3 n=3 Tax=Pelagomonadales TaxID=54409 RepID=J9QSV9_9STRA)

HSP 1 Score: 232 bits (592), Expect = 1.330e-75
Identity = 140/168 (83.33%), Postives = 155/168 (92.26%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGRLS 168
            M RSQRNDNFIDKTFT++ADI+LKVFPASK+EKQAFFYYRDGMSAQ+EG+YAEALENYYEALQ+EEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQALNNIAVIYHYQG +A EKQN + +K LF+KA EYW+QA+ LAP NYIEAQNWL+TTGR+S
Sbjct:    1 MGRSQRNDNFIDKTFTLLADILLKVFPASKQEKQAFFYYRDGMSAQAEGDYAEALENYYEALQIEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHYQGSQAIEKQNTETSKALFDKAGEYWRQAIRLAPTNYIEAQNWLKTTGRIS 168

[Close]

BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: A0A141SCS8_9FLOR (Photosystem I assembly protein Ycf3 n=1 Tax=Sporolithon durum TaxID=48970 RepID=A0A141SCS8_9FLOR)

HSP 1 Score: 232 bits (592), Expect = 1.430e-75
Identity = 140/169 (82.84%), Postives = 155/169 (91.72%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGRLSI 169
            M RSQ+NDNFIDKTFT++ADI+LK+ P SKEEK+AF YYRDGMSAQSEGEYAEALENYYEAL+LEEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN  LPQALNN+AVIYHYQG+KA  + +ID+AK LF+KAAEYWKQA+NLAPNNYIEAQNWL+TTGR SI
Sbjct:    1 MPRSQKNDNFIDKTFTVLADIVLKILPTSKEEKEAFCYYRDGMSAQSEGEYAEALENYYEALKLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNSQLPQALNNVAVIYHYQGLKAKNQGDIDIAKSLFDKAAEYWKQAINLAPNNYIEAQNWLKTTGRFSI 169

[Close]

BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: A0A1Z1M4W4_OSMFI (Photosystem I assembly protein Ycf3 n=1 Tax=Osmundaria fimbriata TaxID=228265 RepID=A0A1Z1M4W4_OSMFI)

HSP 1 Score: 229 bits (583), Expect = 3.020e-74
Identity = 137/166 (82.53%), Postives = 154/166 (92.77%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGR 166
            M RSQ+NDNFIDKTFT++ADIILK+ P SKEEKQAF+YYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQA NNIAVIYHYQG+KA+++Q ++++K +FNKAA+YW QA+ LAPNNYIEAQNWL+TTGR
Sbjct:    1 MPRSQKNDNFIDKTFTVLADIILKILPTSKEEKQAFYYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNANLPQAFNNIAVIYHYQGIKAAQQQKLNMSKEMFNKAAKYWGQAIQLAPNNYIEAQNWLKTTGR 166

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1L2F1V5_9PHAE	9.220e-87	95.83	Photosystem I assembly protein Ycf3 n=58 Tax=Phaeo...	[more]
A0A7S6U9V8_9STRA	8.740e-80	88.55	Photosystem I assembly protein Ycf3 n=1 Tax=Schizo...	[more]
A0A023HBL3_9STRA	3.060e-79	86.90	Photosystem I assembly protein Ycf3 n=10 Tax=Ochro...	[more]
B2XT84_HETAK	2.350e-78	84.62	Photosystem I assembly protein Ycf3 n=2 Tax=Hetero...	[more]
A0A516ZA68_9STRA	9.860e-78	85.12	Photosystem I assembly protein Ycf3 n=3 Tax=Dictyo...	[more]
B7T1Q9_VAULI	2.920e-77	85.80	Photosystem I assembly protein Ycf3 n=1 Tax=Vauche...	[more]
A0A1C9CCZ3_9RHOD	8.500e-76	81.55	Photosystem I assembly protein Ycf3 n=8 Tax=Rhodop...	[more]
J9QSV9_9STRA	1.330e-75	83.33	Photosystem I assembly protein Ycf3 n=3 Tax=Pelago...	[more]
A0A141SCS8_9FLOR	1.430e-75	82.84	Photosystem I assembly protein Ycf3 n=1 Tax=Sporol...	[more]
A0A1Z1M4W4_OSMFI	3.020e-74	82.53	Photosystem I assembly protein Ycf3 n=1 Tax=Osmund...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 35..68 e-value: 0.012 score: 24.8 coord: 72..105 e-value: 5.4E-8 score: 42.6 coord: 106..153 e-value: 52.0 score: 8.7
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 35..68 score: 9.853
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 72..105 score: 13.511
IPR001440	Tetratricopeptide repeat 1	PFAM	PF00515	TPR_1	coord: 74..104 e-value: 4.4E-11 score: 42.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 11..167 e-value: 1.8E-24 score: 88.6
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 31..160
None	No IPR available	PANTHER	PTHR26312:SF124		coord: 43..167
None	No IPR available	PANTHER	PTHR26312	FAMILY NOT NAMED	coord: 43..167
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 35..153 score: 21.724
IPR022818	Photosystem I Ycf3, assembly	HAMAP	MF_00439	Ycf3	coord: 1..168 score: 45.159

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig65173	contig	Ecto-sp13_S_contig65173:147..656 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig65173.17323.1	mRNA_Ecto-sp13_S_contig65173.17323.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig65173 147..656 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig65173.17323.1 ID=prot_Ecto-sp13_S_contig65173.17323.1|Name=mRNA_Ecto-sp13_S_contig65173.17323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGE
YAEALENYYEALQLEEDPYDRSFILYNIGLIYSSNGEYLKALEYYHQALE
LNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLA
PNNYIEAQNWLRTTGRLSI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR001440	TPR_1
IPR011990	TPR-like_helical_dom_sf
IPR013026	TPR-contain_dom
IPR022818	PSI_Ycf3_assembly