mRNA_Ecto-sp13_S_contig65173.17323.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: A0A1L2F1V5_9PHAE (Photosystem I assembly protein Ycf3 n=58 Tax=Phaeophyceae TaxID=2870 RepID=A0A1L2F1V5_9PHAE) HSP 1 Score: 260 bits (665), Expect = 9.220e-87 Identity = 161/168 (95.83%), Postives = 165/168 (98.21%), Query Frame = 1
Query: 1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGRLS 504
MSRSQRNDNFIDKTFTI+ADIILKVFPASKEEK+AFFYY+DGMSAQSEGEYAEALENYYEALQLEEDPYDRS XXXXXXXXXXXXXXXXXXXXXXXXXXX N NLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQA+NLAPNNYIEAQNWLRTTGRLS
Sbjct: 1 MSRSQRNDNFIDKTFTIVADIILKVFPASKEEKEAFFYYKDGMSAQSEGEYAEALENYYEALQLEEDPYDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAINLAPNNYIEAQNWLRTTGRLS 168
BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: A0A7S6U9V8_9STRA (Photosystem I assembly protein Ycf3 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V8_9STRA) HSP 1 Score: 243 bits (619), Expect = 8.740e-80 Identity = 147/166 (88.55%), Postives = 161/166 (96.99%), Query Frame = 1
Query: 1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGR 498
M+RSQ+NDNFIDKTFT+MADI+LKVFPASKEEK+AFFYYRDGMSAQSEGEYAEALENYYEALQ+EEDP DRSXXXXXXXXXXXXXXXXXXXXXXXXXXX LN NLPQALNNIAVIYHYQG+KASEKQNID+AK+LF++A++YWKQA+ LAPNNYIEAQNWL TTGR
Sbjct: 1 MARSQKNDNFIDKTFTVMADILLKVFPASKEEKEAFFYYRDGMSAQSEGEYAEALENYYEALQIEEDPKDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXELNTNLPQALNNIAVIYHYQGIKASEKQNIDIAKILFSRASQYWKQAITLAPNNYIEAQNWLSTTGR 166
BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: A0A023HBL3_9STRA (Photosystem I assembly protein Ycf3 n=10 Tax=Ochrophyta TaxID=2696291 RepID=A0A023HBL3_9STRA) HSP 1 Score: 241 bits (616), Expect = 3.060e-79 Identity = 146/168 (86.90%), Postives = 160/168 (95.24%), Query Frame = 1
Query: 1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGRLS 504
M RSQRNDNFIDKTFTI+ADI+LK+ PASK+EKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQALNNIAVIYHYQGVKAS+K+N+++AK LF+KAAEYWKQA+ LAPNNYIEAQNWL+TTGR++
Sbjct: 1 MGRSQRNDNFIDKTFTIVADILLKILPASKQEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNLNLPQALNNIAVIYHYQGVKASKKKNLEIAKGLFDKAAEYWKQAIKLAPNNYIEAQNWLKTTGRIT 168
BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: B2XT84_HETAK (Photosystem I assembly protein Ycf3 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT84_HETAK) HSP 1 Score: 239 bits (610), Expect = 2.350e-78 Identity = 143/169 (84.62%), Postives = 158/169 (93.49%), Query Frame = 1
Query: 1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGRLSI 507
M RSQRNDNFIDKTFT+MADI+LKVFPASKEEK+AFFYYRDGMSAQSEGEYAEALENYYEALQ+EEDPYDR XXXXXXXXXXXXXXXXXXXXXXXXX LN NLPQALNNIAVIYHYQG+KA++KQN++VA+ F+KAAEYWKQA+ LAP NYIEAQNWL+TTGR ++
Sbjct: 1 MGRSQRNDNFIDKTFTVMADILLKVFPASKEEKEAFFYYRDGMSAQSEGEYAEALENYYEALQIEEDPYDRGFIXXXXXXXXXXXXXXXXXXXXXXXXXALNSNLPQALNNIAVIYHYQGMKATKKQNVEVAREFFDKAAEYWKQAITLAPTNYIEAQNWLKTTGRTNL 169
BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: A0A516ZA68_9STRA (Photosystem I assembly protein Ycf3 n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZA68_9STRA) HSP 1 Score: 238 bits (606), Expect = 9.860e-78 Identity = 143/168 (85.12%), Postives = 158/168 (94.05%), Query Frame = 1
Query: 1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGRLS 504
M R Q+NDNFIDKTFTI+ADI+LKVFPASK+EKQAFFYYR+GMSAQSEGEYAEALENYYEALQ+EEDPYDRS XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQALNNIAVIYHYQG+KASE +N++VAK LF+KA EYW+QA+ LAPNNYIEAQNWL+TTGR+S
Sbjct: 1 MGRIQKNDNFIDKTFTIIADILLKVFPASKQEKQAFFYYREGMSAQSEGEYAEALENYYEALQIEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHYQGIKASEVENLEVAKTLFDKAGEYWQQAIKLAPNNYIEAQNWLKTTGRMS 168
BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: B7T1Q9_VAULI (Photosystem I assembly protein Ycf3 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1Q9_VAULI) HSP 1 Score: 236 bits (603), Expect = 2.920e-77 Identity = 145/169 (85.80%), Postives = 163/169 (96.45%), Query Frame = 1
Query: 1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGRLSI 507
M + QRNDNFIDKTFTIMADI+LKVFPASKEEKQAFFYY+DGMSAQS+GEYAEALE+YYEALQ+EEDPYDRS XXXXXXXXXXXXXXXXXXXXXXXXXXXLN +L QALNNIAVIYHYQG+KA EKQN++VA+LLF+KAAEYWKQA+NLAPNNYIEA+NWL+TTGR+++
Sbjct: 1 MVKIQRNDNFIDKTFTIMADILLKVFPASKEEKQAFFYYKDGMSAQSDGEYAEALEDYYEALQMEEDPYDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXLNSSLMQALNNIAVIYHYQGIKAFEKQNLEVAQLLFDKAAEYWKQAINLAPNNYIEARNWLQTTGRITM 169
BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: A0A1C9CCZ3_9RHOD (Photosystem I assembly protein Ycf3 n=8 Tax=Rhodophyta TaxID=2763 RepID=A0A1C9CCZ3_9RHOD) HSP 1 Score: 233 bits (593), Expect = 8.500e-76 Identity = 137/168 (81.55%), Postives = 152/168 (90.48%), Query Frame = 1
Query: 1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGRLS 504
M RSQRNDNFIDKTFT++ADI+LK+ PASKEEK+AF YYRDGMSAQ+EGEYAEALENYYEAL+LEEDPYDRS XXXXXXXXXXXXXXXXXXXXXXLN LPQALNNIAVIYHYQG+KAS K N + AK++F+KAA+YWKQAV LAPNNYIEAQNWL+TTGRL+
Sbjct: 1 MPRSQRNDNFIDKTFTVLADIVLKILPASKEEKEAFSYYRDGMSAQTEGEYAEALENYYEALRLEEDPYDRSYILYNIXXXXXXXXXXXXXXXXXXXXXXLNSKLPQALNNIAVIYHYQGIKASRKNNFETAKIMFDKAADYWKQAVQLAPNNYIEAQNWLKTTGRLN 168
BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: J9QSV9_9STRA (Photosystem I assembly protein Ycf3 n=3 Tax=Pelagomonadales TaxID=54409 RepID=J9QSV9_9STRA) HSP 1 Score: 232 bits (592), Expect = 1.330e-75 Identity = 140/168 (83.33%), Postives = 155/168 (92.26%), Query Frame = 1
Query: 1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGRLS 504
M RSQRNDNFIDKTFT++ADI+LKVFPASK+EKQAFFYYRDGMSAQ+EG+YAEALENYYEALQ+EEDPYDRS XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQALNNIAVIYHYQG +A EKQN + +K LF+KA EYW+QA+ LAP NYIEAQNWL+TTGR+S
Sbjct: 1 MGRSQRNDNFIDKTFTLLADILLKVFPASKQEKQAFFYYRDGMSAQAEGDYAEALENYYEALQIEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHYQGSQAIEKQNTETSKALFDKAGEYWRQAIRLAPTNYIEAQNWLKTTGRIS 168
BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: A0A141SCS8_9FLOR (Photosystem I assembly protein Ycf3 n=1 Tax=Sporolithon durum TaxID=48970 RepID=A0A141SCS8_9FLOR) HSP 1 Score: 232 bits (592), Expect = 1.430e-75 Identity = 140/169 (82.84%), Postives = 155/169 (91.72%), Query Frame = 1
Query: 1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGRLSI 507
M RSQ+NDNFIDKTFT++ADI+LK+ P SKEEK+AF YYRDGMSAQSEGEYAEALENYYEAL+LEEDPYDRS XXXXXXXXXXXXXXXXXXXXXXXXXLN LPQALNN+AVIYHYQG+KA + +ID+AK LF+KAAEYWKQA+NLAPNNYIEAQNWL+TTGR SI
Sbjct: 1 MPRSQKNDNFIDKTFTVLADIVLKILPTSKEEKEAFCYYRDGMSAQSEGEYAEALENYYEALKLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNSQLPQALNNVAVIYHYQGLKAKNQGDIDIAKSLFDKAAEYWKQAINLAPNNYIEAQNWLKTTGRFSI 169
BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Match: A0A1Z1M4W4_OSMFI (Photosystem I assembly protein Ycf3 n=1 Tax=Osmundaria fimbriata TaxID=228265 RepID=A0A1Z1M4W4_OSMFI) HSP 1 Score: 229 bits (583), Expect = 3.020e-74 Identity = 137/166 (82.53%), Postives = 154/166 (92.77%), Query Frame = 1
Query: 1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAVNLAPNNYIEAQNWLRTTGR 498
M RSQ+NDNFIDKTFT++ADIILK+ P SKEEKQAF+YYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQA NNIAVIYHYQG+KA+++Q ++++K +FNKAA+YW QA+ LAPNNYIEAQNWL+TTGR
Sbjct: 1 MPRSQKNDNFIDKTFTVLADIILKILPTSKEEKQAFYYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNANLPQAFNNIAVIYHYQGIKAAQQQKLNMSKEMFNKAAKYWGQAIQLAPNNYIEAQNWLKTTGR 166 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65173.17323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig65173.17323.1 >prot_Ecto-sp13_S_contig65173.17323.1 ID=prot_Ecto-sp13_S_contig65173.17323.1|Name=mRNA_Ecto-sp13_S_contig65173.17323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEback to top mRNA from alignment at Ecto-sp13_S_contig65173:147..656+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig65173.17323.1 ID=mRNA_Ecto-sp13_S_contig65173.17323.1|Name=mRNA_Ecto-sp13_S_contig65173.17323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65173:147..656+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65173:147..656+ >mRNA_Ecto-sp13_S_contig65173.17323.1 ID=mRNA_Ecto-sp13_S_contig65173.17323.1|Name=mRNA_Ecto-sp13_S_contig65173.17323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65173:147..656+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |