prot_Ecto-sp13_S_contig6349.17101.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6349.17101.1
Unique Nameprot_Ecto-sp13_S_contig6349.17101.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length371
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6349.17101.1 vs. uniprot
Match: D8LKN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN9_ECTSI)

HSP 1 Score: 498 bits (1283), Expect = 2.280e-174
Identity = 257/375 (68.53%), Postives = 296/375 (78.93%), Query Frame = 0 
Query:    6 CVYSCRHPLWGGTGTCEGQDNLLSHECSCDDDGFVSMDSFGSPSCVSRRALVTAYVAVTICGSSAVGFLLWNALKQTRLPRTTRATTKAVLRLRLIWSASAYCGSAAIVFCVAAADKTLYANGMLQVLYTTTFPLACVAAAHMIDVWINNLPSQLVPADSVAIKVIKLAEEKNVCVWVGRLTVVGITPFGLLTFSVLDTMKFVRAVSLVTGAAAACAVFCFNFVGFNLTKIINEAKRNLGPSATPFYEQAVRTLRIQVFALSVAGMVWVTMVVALEPRLGGIGARTPVIPLTIMLLDAFTGLSLAVYFAKVNPP--RAYQPFPK---------PPGGVARTILSDVGAKASGFMLTWAAPVEKRVVPVTAPPTGN 369
            C+YSCRHPLWGGTGTC  QD+L+ +ECSCDDDGF SMDSFG+PSCV RRALV  Y+ + +CGSS VGFL WNALKQ+ LPRT +AT +A+LRLRLIWSASAY GSA+I+FCVAAAD  LYANG L+ L + TFPL C+A AHMID+WIN LP+QLVPADSVAIKVIKLAE+KN+C+WVG L + G+TPFGLLTF VLD +K VRAV+L         V CFNFVG NLTKIIN AKRN GPS+  FYEQA+ TLRIQVFAL+VAG+VW+ MVVALEP LGG+GARTPVIP TIMLLDAF G SLAV+FAK+ P   +++ P  +          P G AR ILSDVGAKAS  M   AAP EKRVVPVT PP G+
Sbjct:    3 CLYSCRHPLWGGTGTCSEQDDLIGYECSCDDDGFTSMDSFGNPSCVLRRALVAGYIIIAVCGSSTVGFLAWNALKQSHLPRTAQATRRAMLRLRLIWSASAYSGSASIIFCVAAADGGLYANG-LKALCSITFPLVCMAVAHMIDLWINTLPTQLVPADSVAIKVIKLAEKKNLCLWVGWLAIAGLTPFGLLTFFVLDVIKVVRAVNL---------VICFNFVGVNLTKIINGAKRNAGPSSIAFYEQAIHTLRIQVFALTVAGVVWIVMVVALEPYLGGVGARTPVIPFTIMLLDAFVGFSLAVHFAKIGPTSRQSFNPLNQLGTQMNSAASPWGGARAILSDVGAKASEVMSMLAAPTEKRVVPVTTPPRGS 367
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6349.17101.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKN9_ECTSI2.280e-17468.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 292..314
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 281..291
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 234..260
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 179..201
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 100..120
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 154..178
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 121..131
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..56
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 207..233
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 202..206
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 315..370
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 57..79
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 132..153
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 80..99
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 261..280
NoneNo IPR availableTMHMMTMhelixcoord: 98..120
NoneNo IPR availableTMHMMTMhelixcoord: 55..77
NoneNo IPR availableTMHMMTMhelixcoord: 179..201
NoneNo IPR availableTMHMMTMhelixcoord: 130..149
NoneNo IPR availableTMHMMTMhelixcoord: 259..281
NoneNo IPR availableTMHMMTMhelixcoord: 211..233
NoneNo IPR availableTMHMMTMhelixcoord: 291..313

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6349contigEcto-sp13_S_contig6349:1170..6557 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6349.17101.1mRNA_Ecto-sp13_S_contig6349.17101.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6349 1170..6557 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6349.17101.1 ID=prot_Ecto-sp13_S_contig6349.17101.1|Name=mRNA_Ecto-sp13_S_contig6349.17101.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=371bp
MAVRECVYSCRHPLWGGTGTCEGQDNLLSHECSCDDDGFVSMDSFGSPSC
VSRRALVTAYVAVTICGSSAVGFLLWNALKQTRLPRTTRATTKAVLRLRL
IWSASAYCGSAAIVFCVAAADKTLYANGMLQVLYTTTFPLACVAAAHMID
VWINNLPSQLVPADSVAIKVIKLAEEKNVCVWVGRLTVVGITPFGLLTFS
VLDTMKFVRAVSLVTGAAAACAVFCFNFVGFNLTKIINEAKRNLGPSATP
FYEQAVRTLRIQVFALSVAGMVWVTMVVALEPRLGGIGARTPVIPLTIML
LDAFTGLSLAVYFAKVNPPRAYQPFPKPPGGVARTILSDVGAKASGFMLT
WAAPVEKRVVPVTAPPTGNY*
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