mRNA_Ecto-sp13_S_contig6349.17101.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6349.17101.1
Unique NamemRNA_Ecto-sp13_S_contig6349.17101.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6349.17101.1 vs. uniprot
Match: D8LKN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN9_ECTSI)

HSP 1 Score: 498 bits (1283), Expect = 2.280e-174
Identity = 257/375 (68.53%), Postives = 296/375 (78.93%), Query Frame = 1 
Query:   16 CVYSCRHPLWGGTGTCEGQDNLLSHECSCDDDGFVSMDSFGSPSCVSRRALVTAYVAVTICGSSAVGFLLWNALKQTRLPRTTRATTKAVLRLRLIWSASAYCGSAAIVFCVAAADKTLYANGMLQVLYTTTFPLACVAAAHMIDVWINNLPSQLVPADSVAIKVIKLAEEKNVCVWVGRLTVVGITPFGLLTFSVLDTMKFVRAVSLVTGAAAACAVFCFNFVGFNLTKIINEAKRNLGPSATPFYEQAVRTLRIQVFALSVAGMVWVTMVVALEPRLGGIGARTPVIPLTIMLLDAFTGLSLAVYFAKVNPP--RAYQPFPK---------PPGGVARTILSDVGAKASGFMLTWAAPVEKRVVPVTAPPTGN 1107
            C+YSCRHPLWGGTGTC  QD+L+ +ECSCDDDGF SMDSFG+PSCV RRALV  Y+ + +CGSS VGFL WNALKQ+ LPRT +AT +A+LRLRLIWSASAY GSA+I+FCVAAAD  LYANG L+ L + TFPL C+A AHMID+WIN LP+QLVPADSVAIKVIKLAE+KN+C+WVG L + G+TPFGLLTF VLD +K VRAV+L         V CFNFVG NLTKIIN AKRN GPS+  FYEQA+ TLRIQVFAL+VAG+VW+ MVVALEP LGG+GARTPVIP TIMLLDAF G SLAV+FAK+ P   +++ P  +          P G AR ILSDVGAKAS  M   AAP EKRVVPVT PP G+
Sbjct:    3 CLYSCRHPLWGGTGTCSEQDDLIGYECSCDDDGFTSMDSFGNPSCVLRRALVAGYIIIAVCGSSTVGFLAWNALKQSHLPRTAQATRRAMLRLRLIWSASAYSGSASIIFCVAAADGGLYANG-LKALCSITFPLVCMAVAHMIDLWINTLPTQLVPADSVAIKVIKLAEKKNLCLWVGWLAIAGLTPFGLLTFFVLDVIKVVRAVNL---------VICFNFVGVNLTKIINGAKRNAGPSSIAFYEQAIHTLRIQVFALTVAGVVWIVMVVALEPYLGGVGARTPVIPFTIMLLDAFVGFSLAVHFAKIGPTSRQSFNPLNQLGTQMNSAASPWGGARAILSDVGAKASEVMSMLAAPTEKRVVPVTTPPRGS 367
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6349.17101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKN9_ECTSI2.280e-17468.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6349contigEcto-sp13_S_contig6349:1170..6557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score132.5
Seed ortholog evalue4.1e-28
Seed eggNOG ortholog2880.D7FP23
Model size1113
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Domain of unknown function (DUF305)
EggNOG OGs2C8JY@1,2S34M@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_001020.1
Cds size1113
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6349.17101.1prot_Ecto-sp13_S_contig6349.17101.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6349 1170..6557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463879.8132837-CDS-Ecto-sp13_S_contig6349:1169..14831681463879.8132837-CDS-Ecto-sp13_S_contig6349:1169..1483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6349 1170..1483 +
1681463879.8264048-CDS-Ecto-sp13_S_contig6349:2665..28281681463879.8264048-CDS-Ecto-sp13_S_contig6349:2665..2828Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6349 2666..2828 +
1681463879.8447225-CDS-Ecto-sp13_S_contig6349:3204..33931681463879.8447225-CDS-Ecto-sp13_S_contig6349:3204..3393Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6349 3205..3393 +
1681463879.8563652-CDS-Ecto-sp13_S_contig6349:3976..40391681463879.8563652-CDS-Ecto-sp13_S_contig6349:3976..4039Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6349 3977..4039 +
1681463879.8687356-CDS-Ecto-sp13_S_contig6349:4575..47431681463879.8687356-CDS-Ecto-sp13_S_contig6349:4575..4743Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6349 4576..4743 +
1681463879.8777173-CDS-Ecto-sp13_S_contig6349:6341..65571681463879.8777173-CDS-Ecto-sp13_S_contig6349:6341..6557Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6349 6342..6557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6349.17101.1

>prot_Ecto-sp13_S_contig6349.17101.1 ID=prot_Ecto-sp13_S_contig6349.17101.1|Name=mRNA_Ecto-sp13_S_contig6349.17101.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=371bp
MAVRECVYSCRHPLWGGTGTCEGQDNLLSHECSCDDDGFVSMDSFGSPSC
VSRRALVTAYVAVTICGSSAVGFLLWNALKQTRLPRTTRATTKAVLRLRL
IWSASAYCGSAAIVFCVAAADKTLYANGMLQVLYTTTFPLACVAAAHMID
VWINNLPSQLVPADSVAIKVIKLAEEKNVCVWVGRLTVVGITPFGLLTFS
VLDTMKFVRAVSLVTGAAAACAVFCFNFVGFNLTKIINEAKRNLGPSATP
FYEQAVRTLRIQVFALSVAGMVWVTMVVALEPRLGGIGARTPVIPLTIML
LDAFTGLSLAVYFAKVNPPRAYQPFPKPPGGVARTILSDVGAKASGFMLT
WAAPVEKRVVPVTAPPTGNY*
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mRNA from alignment at Ecto-sp13_S_contig6349:1170..6557+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6349.17101.1 ID=mRNA_Ecto-sp13_S_contig6349.17101.1|Name=mRNA_Ecto-sp13_S_contig6349.17101.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5388bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6349:1170..6557+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGTCCGCGAGTGTGTATATAGCTGCCGGCACCCTCTCTGGGGTGG
AACGGGCACGTGCGAAGGACAAGATAATCTCCTCAGCCACGAATGCTCTT
GCGATGACGACGGTTTTGTCTCAATGGACTCGTTCGGGAGCCCCAGCTGT
GTGTCGAGGCGCGCGCTAGTGACTGCGTATGTCGCAGTTACAATATGTGG
ATCAAGCGCGGTCGGGTTCCTGCTTTGGAATGCATTGAAGCAAACGCGCC
TACCAAGAACAACCCGAGCCACAACAAAGGCTGTGCTACGATTACGTCTC
ATATGGTCTGCCAGGTGCGGCGTATGCGGCGTACTCGTGGTCGCACGTCG
GTCGAATTCTTCCTATTTATTGGATCACACACGCACATATATTTGTTGGG
AAAAGTCTAGAGTTTTACCTATTCGATAAAGTAACACCATTGACTGGTCT
AATAGTGTAACTTTATCGAATAGTACCATCGCATCCGTTGGTCCGGGGAA
GTCTTGTCTACAATAAATTACTGTTCGCTGCTGGTTTTGTCCTGATGTTG
TCAAGAGTTCACGTGTAACATCACCTGTTGATATTTATTTTGCGACAATC
ACCTTGTATGTCTTACAGTACACTCACTATAGTCTATACATCGTACCTCC
TCCTCCTCCTCCTCCTCCGTACTCGACAGCACGATGAGTCGATGGACACA
GGTGTGGAGTCAAACATGTTGAGTTGTAGTTGAGTGCGCCAATAAAGTGC
GAGCTGACACGCAAACTATGACAATCGAAAACAAGCCAGCACCAACGGCA
GTACGCAAGTAAGTGTGTCTCGAAGGCGACATCTTGAATATGCTGTTTCT
GTAGTGTTGCACATCGTTACGCAGACAAAAACCGCACTGGCTCTATGTAC
TACTAAAGAAGACATGCTGCTGAGCAGGATAAACGGCCCTGTCTATCGGT
GTTGTCCACTCTCTGTCTTCGACTTCCTTTTCTCTGATGCAGTATCACGG
GATCTTTGTAGTTCCTCGAACTGCCTATAGATTTGCGGTTGTTAGGCTAG
ACGGTACTGCTGTAGGCTTTAATGCCCACATTTTCTTTACACAAAGTATT
AATACCAGAGAGGAAAAGACAATGTGGGTAGCGGGACATACTTCACGACA
CCGAGTGGCTTATCTGCCAATCTGCATTCGTATTCAAACTGCTTGAGGGC
GAACAGGACGATCATTACTCAGAAGGCCAACGCAACAGTGCCGATGATTC
TAAGCCCGTGTAGGTGGGGAATTCCGACACCCTACTTCCAAACGCTGGAA
ACTTCACACAACGACTATCCACTGTCGCCATCGCATCCACCTAGTATCGG
GTAATATCTCCGCGTTTCAAGAGGAATGCATTGCTGCGGGGGTGTTCTTC
CAAATTACACCTTCCCGCATCAAACAGATTCATCGAATGATCAGACCCTT
GTGCAAATTCCTTCCTTCGGTTGCCTTGACTGATTGAGTGTTGCAGCGCC
TACTGCGGAAGCGCTGCAATTGTGTTCTGCGTGGCGGCAGCCGATAAAAC
CCTCTACGCCAATGGAATGCTTCAGGTGCTGTACACCACAACTTTTCCTC
TGGCGTGCGTAGCGGCGGCACACATGATCGACGTCTGGATAAACAATCTT
CCATCACAGGTGTAGTCCGGGGACTTGAGATAAACATCGTGCACCAACCG
CGTCTGAAAACCCCGGGAGAAATGCATGTATCTTGGTTGTTGTGGATAGT
GGTATCCTGGATCATGAACGCTTCGCAAGTGGTGCTGTGATGCAAAGGCC
CACAACACGTATGCCGGATAGGCCTCTTTCCCTCCCTTGCAAATGTCAAA
CCGTGGCCATCGATGACCTTCTTGACCACAAGCGTGCTTCTTCACGTGTG
GTTGTTTCAGTCTGGTGCATGTCAAGCACAACGGTTCGGAAAAGATGGTA
CAGAGCCCCTTCCCGACGTGAAATCGCCACCACCACGCTCGAGAACCCTT
TGCCCCGCCTACCCCCCTTCCCTATCGTGTTGCAGCTTGTACCTGCAGAC
AGTGTGGCCATCAAGGTGATAAAGCTGGCCGAGGAGAAAAATGTCTGCGT
GTGGGTAGGTCGGCTGACTGTTGTTGGGATCACGCCCTTCGGCCTCTTGA
CGTTCTCCGTCTTGGACACCATGAAGTTCGTGAGGGCCGTCAGCCTGGTA
ACAGGGGCAGCTGCGGCATGCGCGGTGGGTCAGGACTTCTCAAAAGTCTT
TGAGGACGGCCTACAGTTATGTTGGGTCAAGGGGTATGGGTGGATTAGAC
AGGACAGCACTCAACCCGGCGTGATCAGGAATACTTGCTGGACGTACCAC
GGCATTCGGATGAAGCTTGAACCATTCACTGTGAAGATGCCATCTTTGAC
GATCATGCTCTTTTCTCTTCCTCTGTATGCTACGAGGTGACCAGTCATGA
CGACGCTGAAGTAGTACACAGCGGACAATAGAATACTGGTAGTGGTTGGA
CAGGGTGTAACCTCGATCTGAATGTACGTTGACCTCAGTTTCTCAGACTA
CAGAGCATGGCCGCAAAGAAGGGGGCGCCATTTTGTGGGACTGTAAGATA
GATCTACCACGTCGTACTGGGAGAAGGGTGTCCTGAAGGCTATATCGATA
CCTTTTGACTTCCGTGACGTTCCCTACCTCACCCCTACGGCGCTTGACGT
TGGACCTTCCTCCAACGGAATGTTTTCTTCCCAGCATATTGACCTTACCA
GTAAGCAATAATGTTCATGTCTCTCCCCCTTTGCTTGGTGTGTCCCATGT
CACGCAGGTGTTCTGCTTCAACTTTGTGGGTTTCAACCTTACCAAAATCA
TCAACGAGGCCAAGCGAAATGTGAGAGTCTGAGTCTCAGAGACTTGCAAG
GGAGATTGCCTCCGCCGCTCAGGGCAGGCGTAAACAAACGCGGTTGCCAC
TGTGGCTTCCACCATACCTCTGCACCCTTGCTCTGAGTGTGTTGACCATG
TTGGGGTGTTGTGGGAAGAAAGTAGTGAGGCGCGCACAACATTCTGTGCT
GTCTAGCGGTCGTCCTTCTTTAGTGGCTTCTTAGGGATCTACGACTTGTC
AACGTCGTCGGTCGTCCTACATGCACGCATGAGAGACGTCGCGACATCAT
TAACCTGGCTGTGATCATTCACAGCGCACGTTGTAGACGCACCAGCTAAC
CGCTCCAACTCTAACGCAACGGTGATGACTCAGAAATCACGACGTTGCTC
TTCTGTCTCTCTATGTGAGCTTCACGACTTGAGCAACCATGGGGTCAAGA
ATCTGGATCGGGTTTCGAACAACGCGCGTGGTTGACAAAGCAGTACGTGC
TGTTGTCGAAGCTAAACGCATCACAACCATTGCATGTGTGCACTGTGGTT
TTTCAGCTTGGGCCATCAGCTACGCCGTTCTACGAGCAAGCGGTCCGTAC
CCTGAGGATCCAAGTTTTCGCGCTGAGTGTAGCCGGGATGGTGTGGGTCA
CCATGGTTGTGGCCCTCGAGCCGCGCCTAGGCGGTATCGGAGCACGTACT
CCGGTTATCCCGCTCACGATTATGGTGAGAACACCCTATGGCTCGATCGT
CTGGAGGACATTATGAGACATTATGCTTGCAAAGATCAAGGTGCACAGGT
GTAGCTTCACCCTCCCCAACATCGATTACCAGATCACTCGAAGCCCAACT
GGCGCAGGGTGCAAACGGCAGTCGGCTGGAACAAGGTGCGTGAAAGTTTC
ATGATGCTCTAGAACTGTACCCGCCATTCGTTGGTCTAAGATATGTGGTA
CCGCCGCATGCACAAGCTGGTTAAGTGACAACGGGAAAGGTCAGTTCAGC
ACAATATTGCACGCGCAAGTTCGAAAACACTCAGAAACGTTTTCTTGGGC
GTACATTTTTCGGCGGTAATGCCATACGGCCGTAATTATTTGGCGGTAAG
CAGTATTTCATTTTTGGCGGTGACGACGTTGGCGAAGGCGCGATAACCAC
ATACGGCTACAATTGTTTTCGGCAGCAAAATTACCGAGAACTCTACAAAC
CCTTGGAAAAAGCGGACCCTGAGTGTTTGAACACGACGGCTGAGAACTTC
GCCCTCGAAGGGTCGATTTAGCCCACTGGTGTGGGTTTCATGGTGGTTTC
AGGGTAGTTGAGGGCCCATGGGCCTGCCTCCTGCAATAATCGATACTAGG
CGATCGAAGAACATCAGGTTGTCCAAAAACTACGCAGTCACGTTAGTACT
GGCATTTCAGGTTCTACCCTACTGCAACTTCGAGAAGAGCAGCTTCAGAG
GGTGGGCTCCGCCCCATTACAAAATCTGAGAATTGATACATGAGCGTGCG
ACGGATGCAAGAGAGACTGCTCGGAAGCTGTTGGGAATGTTGCTGCAGAG
TCGACCACTTGAATCTGGTGACACCTAAAGCTAAACCAATTTTTTGTTTC
CTAATCTTATCTTGTGTCAAATCCCCTGTATCTTGGAGAGGACGTACCGA
GTATCTGTTAATTCAGATACTGGAAGACAGCGCAAGAACTGCGGGTGCGA
CGTAGATTGAACTACGGAAACGCCTCGAAGGCCATGACTGTAGCTGAGAC
GCGCTAATGCCCACAACACCAAAGCACACCTCCATGACGTAGTCGGCCAC
ATCATCTTCTTGACTGCCGTAGGATCGTGTCCACACATTTTGACGCCTGA
GTAAAGTATTTGCTGCTGATGGAGTCTGCGTGCGTGCACCCTAAACCAAC
TGGTGCCCTCCAACGTTTACTGTTTGTTTTTTTCCTTAGTCAGCCTTCCT
TATTGGTTTCCGGTGATTTTAATGGTGTGTATTGTTCTCGCGTGGGTTTC
GATTTCTCTCATGCACACACTGCTATCTGATCTGCAGCTGCGAACGATTG
CCAGGCCTGCGGAAAAAACAGCAAAAAAAAGCCATATATATCTGCAACCT
CAAAGCGGTCCCATGGTGAGAAATTCTTTCAGCCCGCAACATGCACAGGG
CGCGCAGAACAAGCTGGCGTACTCTGTACGTCCCTACGCTCCCACGGCAG
CGATTGTTGCGAAAATGACGGACGCCCGGACTCACCCTTACCCTAATCGC
TGTCTGTTTTTTCTCACCTTGTTCTCGTTTATGCGTTTTTGCCGTCAACG
TCACCGATCGATGTTTCGCCAGCTGTTGGACGCTTTTACGGGGTTGAGCT
TGGCGGTTTACTTTGCCAAGGTAAACCCGCCGAGAGCCTACCAACCCTTC
CCTAAACCGCCGGGGGGTGTGGCAAGAACGATATTGTCCGACGTCGGGGC
CAAGGCCTCCGGGTTTATGTTAACGTGGGCGGCACCTGTAGAGAAGCGCG
TGGTGCCGGTGACGGCCCCGCCAACAGGAAACTATTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6349:1170..6557+

>mRNA_Ecto-sp13_S_contig6349.17101.1 ID=mRNA_Ecto-sp13_S_contig6349.17101.1|Name=mRNA_Ecto-sp13_S_contig6349.17101.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1113bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6349:1170..6557+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGTCCGCGAGTGTGTATATAGCTGCCGGCACCCTCTCTGGGGTGG
AACGGGCACGTGCGAAGGACAAGATAATCTCCTCAGCCACGAATGCTCTT
GCGATGACGACGGTTTTGTCTCAATGGACTCGTTCGGGAGCCCCAGCTGT
GTGTCGAGGCGCGCGCTAGTGACTGCGTATGTCGCAGTTACAATATGTGG
ATCAAGCGCGGTCGGGTTCCTGCTTTGGAATGCATTGAAGCAAACGCGCC
TACCAAGAACAACCCGAGCCACAACAAAGGCTGTGCTACGATTACGTCTC
ATATGGTCTGCCAGCGCCTACTGCGGAAGCGCTGCAATTGTGTTCTGCGT
GGCGGCAGCCGATAAAACCCTCTACGCCAATGGAATGCTTCAGGTGCTGT
ACACCACAACTTTTCCTCTGGCGTGCGTAGCGGCGGCACACATGATCGAC
GTCTGGATAAACAATCTTCCATCACAGCTTGTACCTGCAGACAGTGTGGC
CATCAAGGTGATAAAGCTGGCCGAGGAGAAAAATGTCTGCGTGTGGGTAG
GTCGGCTGACTGTTGTTGGGATCACGCCCTTCGGCCTCTTGACGTTCTCC
GTCTTGGACACCATGAAGTTCGTGAGGGCCGTCAGCCTGGTAACAGGGGC
AGCTGCGGCATGCGCGGTGTTCTGCTTCAACTTTGTGGGTTTCAACCTTA
CCAAAATCATCAACGAGGCCAAGCGAAATCTTGGGCCATCAGCTACGCCG
TTCTACGAGCAAGCGGTCCGTACCCTGAGGATCCAAGTTTTCGCGCTGAG
TGTAGCCGGGATGGTGTGGGTCACCATGGTTGTGGCCCTCGAGCCGCGCC
TAGGCGGTATCGGAGCACGTACTCCGGTTATCCCGCTCACGATTATGCTG
TTGGACGCTTTTACGGGGTTGAGCTTGGCGGTTTACTTTGCCAAGGTAAA
CCCGCCGAGAGCCTACCAACCCTTCCCTAAACCGCCGGGGGGTGTGGCAA
GAACGATATTGTCCGACGTCGGGGCCAAGGCCTCCGGGTTTATGTTAACG
TGGGCGGCACCTGTAGAGAAGCGCGTGGTGCCGGTGACGGCCCCGCCAAC
AGGAAACTATTAG
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