mRNA_Ecto-sp13_S_contig63071.17053.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: D7FQJ9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQJ9_ECTSI) HSP 1 Score: 133 bits (334), Expect = 7.620e-38 Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 2
Query: 2 VEKGPMWQLLFWICFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 193
VEKGPMWQLLFWI AEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKL+ELKHGRL
Sbjct: 117 VEKGPMWQLLFWISLAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLAELKHGRL 180
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: A0A835ZCB2_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB2_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.240e-21 Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 2
Query: 2 VEKGPMWQLLFWICFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 193
VEKGPM QLLFW+ EII P +M KDREPGDF+LDPL CK PEK ++Y+LSELK+GRL
Sbjct: 121 VEKGPMVQLLFWLSLFEIITAPLTWNMQAKDREPGDFSLDPLGFCKDPEKKKRYQLSELKNGRL 184
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: A0A835Z019_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z019_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 1.840e-19 Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 2
Query: 2 VEKGPMWQLLFWICFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 193
VEKGPM +LFW+ E++ P +M +KDREPGDF LDPL CK PEK ++Y+LSELK+GRL
Sbjct: 118 VEKGPMVMVLFWVSLFELLTAPLTWNMAEKDREPGDFMLDPLGFCKDPEKKKRYQLSELKNGRL 181
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: A0A0G4H306_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H306_VITBC) HSP 1 Score: 82.4 bits (202), Expect = 6.190e-18 Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 2
Query: 2 VEKGPMWQLLFWICFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 193
VE G M QLLFW+ EI+ F TV+DMD+KDREPGDF++DP +TPE+ + ELK+GRL
Sbjct: 123 VENGVMGQLLFWVSLWEIVTFKTVVDMDEKDREPGDFSMDPFGWTRTPERARVLRTQELKNGRL 186
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: A0A0G4FXK5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FXK5_9ALVE) HSP 1 Score: 66.2 bits (160), Expect = 9.470e-12 Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 2
Query: 2 VEKGPMWQLLFWICFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 193
V +G M QL WI E++ F T +DMDKKDR PGDF+ DPL L K E K K+ E+K+GRL
Sbjct: 122 VAEGVMTQLFGWIGLLEMLTFRTCLDMDKKDRAPGDFSFDPLKLGK--EDMTKMKVREIKNGRL 183
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: F0Y5A3_AURAN (Putative plastid light harvesting protein isoform 33 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5A3_AURAN) HSP 1 Score: 61.2 bits (147), Expect = 7.400e-10 Identity = 31/65 (47.69%), Postives = 37/65 (56.92%), Query Frame = 2
Query: 5 EKGPMWQLLFWICFAEIILFPTVIDMD--KKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 193
+ G M QL W+ F E+IL V M REPGD+ LDPL+ C TPEK KL E+ H RL
Sbjct: 116 KYGAMQQLFLWLSFTEVILSAGVAQMMWMGSPREPGDYGLDPLDFCSTPEKKADMKLKEITHCRL 180
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: A0A8J2SH85_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SH85_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 5.550e-9 Identity = 29/65 (44.62%), Postives = 37/65 (56.92%), Query Frame = 2
Query: 5 EKGPMWQLLFWICFAEIILFPTVIDMD--KKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 193
+ G M Q+ W+ F E++ V M DR+PGDF LDPL+ C TPEK KL E+ H RL
Sbjct: 116 KYGAMQQIFLWLSFIEVVHSFGVAQMMWMGSDRQPGDFGLDPLDFCSTPEKAADMKLKEITHCRL 180
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: A0A7S3WIW7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WIW7_EMIHU) HSP 1 Score: 57.0 bits (136), Expect = 3.240e-8 Identity = 30/66 (45.45%), Postives = 37/66 (56.06%), Query Frame = 2
Query: 2 VEKGPMWQLLFWICFAEIILFPTVIDM--DKKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 193
V+ GPM LL + E I + + +M + DR PGDF LDP NLC TPEK E E+ H RL
Sbjct: 122 VKAGPMLGLLLAVGAIEAISYNAIAEMMSGETDRRPGDFYLDPFNLCSTPEKLESMLEKEISHCRL 187
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: A0A7S0AVV2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AVV2_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 1.170e-6 Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 2
Query: 2 VEKGPMWQLLFWICFAEIILF-PTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 193
++ GPM+QLLFW+ F +I++ P V+ + +REPGDFA K +K K++EL +GRL
Sbjct: 118 LKTGPMYQLLFWVGFIDILVTAPAVVASFEGEREPGDFAFGTKFAPKDDAGMQKKKVAELLNGRL 182 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig63071.17053.1 >prot_Ecto-sp13_S_contig63071.17053.1 ID=prot_Ecto-sp13_S_contig63071.17053.1|Name=mRNA_Ecto-sp13_S_contig63071.17053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp MWQLLFWICFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKback to top mRNA from alignment at Ecto-sp13_S_contig63071:3..591- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig63071.17053.1 ID=mRNA_Ecto-sp13_S_contig63071.17053.1|Name=mRNA_Ecto-sp13_S_contig63071.17053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=589bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63071:3..591- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig63071:3..591- >mRNA_Ecto-sp13_S_contig63071.17053.1 ID=mRNA_Ecto-sp13_S_contig63071.17053.1|Name=mRNA_Ecto-sp13_S_contig63071.17053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63071:3..591- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |