prot_Ecto-sp13_S_contig5868.16367.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig5868.16367.1
Unique Name	prot_Ecto-sp13_S_contig5868.16367.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	176

Homology

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BLAST of mRNA_Ecto-sp13_S_contig5868.16367.1 vs. uniprot
Match: D8LU93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU93_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 5.240e-86
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0

Query:   38 MAVPVEEFFAGSSSTALKRVHRQRLMAFGVVLVGCTLVSWILVILCWQLTPSTRGPGSRILADFLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFSYSALALPNLGQGLATIVAHWLIGMALGFFAWNFAAPRG 176
            MAVPVEEFFAGSSSTALKRVHRQRLMAFGVVLVGCTLVSWILVILCWQL PSTRGPGSRILADFLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFSYSALALPNLGQGLAT+VAHWLIGMALGFFAWNFAAPRG
Sbjct:    1 MAVPVEEFFAGSSSTALKRVHRQRLMAFGVVLVGCTLVSWILVILCWQLMPSTRGPGSRILADFLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFSYSALALPNLGQGLATVVAHWLIGMALGFFAWNFAAPRG 139

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BLAST of mRNA_Ecto-sp13_S_contig5868.16367.1 vs. uniprot
Match: A0A6H5JGF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF5_9PHAE)

HSP 1 Score: 271 bits (694), Expect = 1.070e-83
Identity = 135/139 (97.12%), Postives = 138/139 (99.28%), Query Frame = 0

Query:   38 MAVPVEEFFAGSSSTALKRVHRQRLMAFGVVLVGCTLVSWILVILCWQLTPSTRGPGSRILADFLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFSYSALALPNLGQGLATIVAHWLIGMALGFFAWNFAAPRG 176
            MA+PVEEFFAGSSSTALKRVHRQRLMAFGVVLVGCTLVSWILVILCWQLTPSTRGPGSRI ADFLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFS+SALALPNLGQGLAT+VAHWLIGMALGFFAWNFAAPRG
Sbjct:    1 MAIPVEEFFAGSSSTALKRVHRQRLMAFGVVLVGCTLVSWILVILCWQLTPSTRGPGSRIPADFLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFSFSALALPNLGQGLATVVAHWLIGMALGFFAWNFAAPRG 139

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig5868.16367.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig5868.16367.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LU93_ECTSI	5.240e-86	98.56	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JGF5_9PHAE	1.070e-83	97.12	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 99..121
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 173..176
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 88..98
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..61
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 122..150
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 62..87
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 151..172
None	No IPR available	TMHMM	TMhelix		coord: 99..121
None	No IPR available	TMHMM	TMhelix		coord: 151..173
None	No IPR available	TMHMM	TMhelix		coord: 62..84

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig5868	contig	Ecto-sp13_S_contig5868:2171..3622 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig5868.16367.1	mRNA_Ecto-sp13_S_contig5868.16367.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig5868 2171..3622 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig5868.16367.1 ID=prot_Ecto-sp13_S_contig5868.16367.1|Name=mRNA_Ecto-sp13_S_contig5868.16367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=176bp
MFLVLISNGQPAPKTTGGERRPTRVLVGKARHQHQRNMAVPVEEFFAGSS
STALKRVHRQRLMAFGVVLVGCTLVSWILVILCWQLTPSTRGPGSRILAD
FLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFSYSALALPNLGQG
LATIVAHWLIGMALGFFAWNFAAPRG