mRNA_Ecto-sp13_S_contig5868.16367.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5868.16367.1
Unique NamemRNA_Ecto-sp13_S_contig5868.16367.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5868.16367.1 vs. uniprot
Match: D8LU93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU93_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 5.240e-86
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 1 
Query:  112 MAVPVEEFFAGSSSTALKRVHRQRLMAFGVVLVGCTLVSWILVILCWQLTPSTRGPGSRILADFLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFSYSALALPNLGQGLATIVAHWLIGMALGFFAWNFAAPRG 528
            MAVPVEEFFAGSSSTALKRVHRQRLMAFGVVLVGCTLVSWILVILCWQL PSTRGPGSRILADFLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFSYSALALPNLGQGLAT+VAHWLIGMALGFFAWNFAAPRG
Sbjct:    1 MAVPVEEFFAGSSSTALKRVHRQRLMAFGVVLVGCTLVSWILVILCWQLMPSTRGPGSRILADFLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFSYSALALPNLGQGLATVVAHWLIGMALGFFAWNFAAPRG 139
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BLAST of mRNA_Ecto-sp13_S_contig5868.16367.1 vs. uniprot
Match: A0A6H5JGF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF5_9PHAE)

HSP 1 Score: 271 bits (694), Expect = 1.070e-83
Identity = 135/139 (97.12%), Postives = 138/139 (99.28%), Query Frame = 1 
Query:  112 MAVPVEEFFAGSSSTALKRVHRQRLMAFGVVLVGCTLVSWILVILCWQLTPSTRGPGSRILADFLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFSYSALALPNLGQGLATIVAHWLIGMALGFFAWNFAAPRG 528
            MA+PVEEFFAGSSSTALKRVHRQRLMAFGVVLVGCTLVSWILVILCWQLTPSTRGPGSRI ADFLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFS+SALALPNLGQGLAT+VAHWLIGMALGFFAWNFAAPRG
Sbjct:    1 MAIPVEEFFAGSSSTALKRVHRQRLMAFGVVLVGCTLVSWILVILCWQLTPSTRGPGSRIPADFLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFSFSALALPNLGQGLATVVAHWLIGMALGFFAWNFAAPRG 139
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5868.16367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU93_ECTSI5.240e-8698.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGF5_9PHAE1.070e-8397.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5868contigEcto-sp13_S_contig5868:2171..3622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size529
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_004150.1
Cds size528
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463815.254304-CDS-Ecto-sp13_S_contig5868:2170..23831681463815.254304-CDS-Ecto-sp13_S_contig5868:2170..2383Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5868 2171..2383 -
1681463815.2717013-CDS-Ecto-sp13_S_contig5868:3307..36221681463815.2717013-CDS-Ecto-sp13_S_contig5868:3307..3622Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5868 3308..3622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5868.16367.1prot_Ecto-sp13_S_contig5868.16367.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5868 2171..3622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5868.16367.1

>prot_Ecto-sp13_S_contig5868.16367.1 ID=prot_Ecto-sp13_S_contig5868.16367.1|Name=mRNA_Ecto-sp13_S_contig5868.16367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=176bp
MFLVLISNGQPAPKTTGGERRPTRVLVGKARHQHQRNMAVPVEEFFAGSS
STALKRVHRQRLMAFGVVLVGCTLVSWILVILCWQLTPSTRGPGSRILAD
FLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFSYSALALPNLGQG
LATIVAHWLIGMALGFFAWNFAAPRG
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mRNA from alignment at Ecto-sp13_S_contig5868:2171..3622-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5868.16367.1 ID=mRNA_Ecto-sp13_S_contig5868.16367.1|Name=mRNA_Ecto-sp13_S_contig5868.16367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1452bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5868:2171..3622- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCTGGTTCTCATCAGCAATGGGCAACCAGCACCAAAGACAACAGG
TGGAGAGAGGCGGCCTACCAGAGTGCTTGTGGGAAAGGCAAGACATCAGC
ACCAACGAAACATGGCCGTCCCCGTAGAAGAGTTTTTCGCTGGTTCGAGC
AGCACAGCGCTGAAGAGGGTGCACCGCCAGCGGTTGATGGCGTTCGGCGT
TGTCCTCGTGGGGTGCACGCTCGTCTCTTGGATCCTGGTGATCTTGTGTT
GGCAGCTCACGCCCAGCACGCGTGGGCCCGGTTCTAGGATACTTGCGGAT
TTCCTGTCCATCATGGTGAGCAACAACGTACATTTTTTCCGCTTTGGAGA
ACTGTCAGTGTGCATTCGGGAGTGTGTGGGAAACGCTGAGAGTTTTTGAA
ATTTGCGACATGGACACAGCACTGCTGTACACATTCAGTCTGCGCGTACA
GCAAGGCCACCATTACCGAGTATAATAGAACGGTGTGTAGACTGAATAAG
GACACTGCTTTTGAGGCTTAACACTACCGTTGCATGCGCGCAGTAGAGCG
ACAATAGTAGCAACCGGTGCTTGACTGTTTGGCATCATGCGTTGTCACCG
TTGTGGAAAAAAATACCCAGGAACCAAGTAGTCTTGGGAAAAATAGATCA
ACGTCCTCTCTCGCAACAGGTGTAGAGATAAAGATAAAGATTTGGGCGGG
TCATGACCGGTATCATACTGACTTGCAGCAGCACGTCTTTATTGAAGTAC
TTTATTCAACAGGTCGGCCGGTCGCCCCTGTGGTTCAGCAATACCCCGTG
ACATGAAAAAGTTTCTACACAGTTGGGCAGGCGGGAAGGTCTGTTGTTCC
TACCCTTCTCTCCTCACAACCTCACGTGTAGGGGCTTGGAAGGCTTGTCA
CGAGTGGGTGCTATCTCCAAGAATCTCGTCTCATCCACGGAACCTCTTTG
TGGTTCCATTAGTTCCAAGATCTCGGCATTATGCTACCCCGCAGAGGGCT
TTTTTTTTCATAACGGCCGAGAGGGGTGACCAATGGATCAATCACCGTCA
GCCGTTTGGGAAGGAAAAAGTTTTGAGTGCAAAAAAGCACACGCATATGT
AGGTGTGTGAGAAAAGACTATCGCATACATCTGGTAAAGACGTTCCACTC
ACGAACATTGAAATGCCTCTTTTTTTTTGTGTGCGGGTGGTCGGCTAAAT
GAACGAACGAACGAATCAACGGACGAACCACGCGAGCAGGTGGTGGCGCT
GTGCCACAGCCTCGCGGTATTCTCGCGGTACCTCGTGTGCGACGCGGACG
ACGCCCCCCGCCGCCGCGCCGCCTCTGGGGGCTTTTCCTACTCCGCCCTC
GCCCTACCCAACCTGGGGCAGGGGCTCGCGACGATAGTCGCCCACTGGCT
CATCGGCATGGCTCTCGGGTTCTTCGCGTGGAACTTCGCGGCACCTAGGG
GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5868:2171..3622-

>mRNA_Ecto-sp13_S_contig5868.16367.1 ID=mRNA_Ecto-sp13_S_contig5868.16367.1|Name=mRNA_Ecto-sp13_S_contig5868.16367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5868:2171..3622- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCTGGTTCTCATCAGCAATGGGCAACCAGCACCAAAGACAACAGG
TGGAGAGAGGCGGCCTACCAGAGTGCTTGTGGGAAAGGCAAGACATCAGC
ACCAACGAAACATGGCCGTCCCCGTAGAAGAGTTTTTCGCTGGTTCGAGC
AGCACAGCGCTGAAGAGGGTGCACCGCCAGCGGTTGATGGCGTTCGGCGT
TGTCCTCGTGGGGTGCACGCTCGTCTCTTGGATCCTGGTGATCTTGTGTT
GGCAGCTCACGCCCAGCACGCGTGGGCCCGGTTCTAGGATACTTGCGGAT
TTCCTGTCCATCATGGTGGTGGCGCTGTGCCACAGCCTCGCGGTATTCTC
GCGGTACCTCGTGTGCGACGCGGACGACGCCCCCCGCCGCCGCGCCGCCT
CTGGGGGCTTTTCCTACTCCGCCCTCGCCCTACCCAACCTGGGGCAGGGG
CTCGCGACGATAGTCGCCCACTGGCTCATCGGCATGGCTCTCGGGTTCTT
CGCGTGGAACTTCGCGGCACCTAGGGGA
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