prot_Ecto-sp13_S_contig58565.16346.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig58565.16346.1
Unique Nameprot_Ecto-sp13_S_contig58565.16346.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length64
Homology
BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: B7ZGM7_9PHAE (60S ribosomal protein L36 (Fragment) n=3 Tax=Phaeophyceae TaxID=2870 RepID=B7ZGM7_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.420e-23
Identity = 50/63 (79.37%), Postives = 53/63 (84.13%), Query Frame = 0
Query:    1 RPCSSHPLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRVRT 63
            R   + P   + RLG RVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRR+ T
Sbjct:   23 RAQKARPSHHKGRLGKRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGT 85          
BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: A0A835YST3_9STRA (60S ribosomal protein L36 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST3_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.270e-19
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 0
Query:    2 PCSSHPLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRVRT 63
            P    P   + RLG RV +VR+VVREVAGLMPYEKRILDMIK GGASAEKR+YKFAK+R+ T
Sbjct:   17 PKKPKPSARKGRLGKRVSVVRQVVREVAGLMPYEKRILDMIKVGGASAEKRMYKFAKKRLGT 78          
BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: F0YH51_AURAN (60S ribosomal protein L36 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YH51_AURAN)

HSP 1 Score: 80.1 bits (196), Expect = 3.580e-18
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    4 SSHPLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRVRT 63
            +  P   + RL  R K+VREVVREVAGL+PYEKRILDMIKTGGAS+EKR+YKFAK R+ T
Sbjct:   12 AQRPKHRKGRLSARTKVVREVVREVAGLVPYEKRILDMIKTGGASSEKRMYKFAKMRLGT 71          
BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: F0WSK9_9STRA (60S ribosomal protein L36 n=2 Tax=Albugo TaxID=65356 RepID=F0WSK9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.160e-18
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 0
Query:    1 RPCSSHPLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRVRT 63
            R   + P   + R G + K+VR++VREV GLMPYEKRILDMIK+GG+SAEKRIYKF+K+R+ T
Sbjct:   19 RQIPARPASKKGRCGKKTKLVRQIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRLGT 81          
BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: M4BXW6_HYAAE (60S ribosomal protein L36 n=21 Tax=Peronosporaceae TaxID=4777 RepID=M4BXW6_HYAAE)

HSP 1 Score: 79.3 bits (194), Expect = 9.410e-18
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 0
Query:    7 PLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRVRT 63
            P   + R G + K+VRE+VREV GLMPYEKRILDMIK+GG+SAEKRIYKF+K+R+ T
Sbjct:   25 PASRKGRAGKKTKLVREIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRLGT 81          
BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: H3G707_PHYRM (60S ribosomal protein L36 n=4 Tax=Oomycota TaxID=4762 RepID=H3G707_PHYRM)

HSP 1 Score: 79.0 bits (193), Expect = 1.050e-17
Identity = 38/60 (63.33%), Postives = 50/60 (83.33%), Query Frame = 0
Query:    4 SSHPLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRVRT 63
            ++ P   + R G + K+VR++VREV GLMPYEKRILDMIK+GG+SAEKRIYKF+K+R+ T
Sbjct:   19 AARPASRKGRAGKKTKLVRDIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRLGT 78          
BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: B8BZT3_THAPS (60S ribosomal protein L36 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZT3_THAPS)

HSP 1 Score: 78.2 bits (191), Expect = 2.620e-17
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 0
Query:    4 SSHPLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRV 61
            ++ P + + RLG R  + RE+ REVAGL PYE+RILDMIKTGG+SA+KRIYKFAKRR+
Sbjct:   22 AARPSQSKGRLGKRTALCREIAREVAGLSPYERRILDMIKTGGSSADKRIYKFAKRRL 79          
BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: A0A5D6XYW5_9STRA (60S ribosomal protein L36 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYW5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.020e-17
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 0
Query:    7 PLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRVRT 63
            P   + R G ++K+VR VVREV GLMPYEKRILDMIK+GG+SAEKRIYKF+K+R+ T
Sbjct:   58 PASRKGRAGKKIKLVRSVVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRLGT 114          
BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: A0A7R9ZLZ7_9STRA (60S ribosomal protein L36 n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZLZ7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.020e-17
Identity = 38/48 (79.17%), Postives = 45/48 (93.75%), Query Frame = 0
Query:   14 LGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRV 61
            LG R KMVRE++REVAGL PYE+RILDMIKTGG++A+KRIYKFAKRR+
Sbjct:   91 LGERTKMVRELIREVAGLSPYERRILDMIKTGGSAADKRIYKFAKRRL 138          
BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: K0T5I4_THAOC (60S ribosomal protein L36 n=2 Tax=Thalassiosirales TaxID=33847 RepID=K0T5I4_THAOC)

HSP 1 Score: 77.4 bits (189), Expect = 5.270e-17
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 0
Query:    1 RPCSSHPLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRV 61
            R  ++ P R + +LG R  + RE+ REVAGL PYE+RILDMIKTGG++A+KRIYKFAKRR+
Sbjct:   19 RERAAKPSRTKGKLGKRTALCREIAREVAGLSPYERRILDMIKTGGSAADKRIYKFAKRRL 79          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7ZGM7_9PHAE2.420e-2379.3760S ribosomal protein L36 (Fragment) n=3 Tax=Phaeo... [more]
A0A835YST3_9STRA1.270e-1970.9760S ribosomal protein L36 n=1 Tax=Tribonema minus ... [more]
F0YH51_AURAN3.580e-1870.0060S ribosomal protein L36 n=1 Tax=Aureococcus anop... [more]
F0WSK9_9STRA9.160e-1861.9060S ribosomal protein L36 n=2 Tax=Albugo TaxID=653... [more]
M4BXW6_HYAAE9.410e-1868.4260S ribosomal protein L36 n=21 Tax=Peronosporaceae... [more]
H3G707_PHYRM1.050e-1763.3360S ribosomal protein L36 n=4 Tax=Oomycota TaxID=4... [more]
B8BZT3_THAPS2.620e-1765.5260S ribosomal protein L36 n=1 Tax=Thalassiosira ps... [more]
A0A5D6XYW5_9STRA3.020e-1768.4260S ribosomal protein L36 n=1 Tax=Pythium brassicu... [more]
A0A7R9ZLZ7_9STRA4.020e-1779.1760S ribosomal protein L36 n=1 Tax=Craspedostauros ... [more]
K0T5I4_THAOC5.270e-1762.3060S ribosomal protein L36 n=2 Tax=Thalassiosirales... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038097Ribosomal protein L36e domain superfamilyGENE3D1.10.10.1760coord: 2..63
e-value: 2.7E-18
score: 67.9
IPR000509Ribosomal protein L36ePFAMPF01158Ribosomal_L36ecoord: 6..63
e-value: 2.6E-17
score: 62.8
IPR000509Ribosomal protein L36ePANTHERPTHR1011460S RIBOSOMAL PROTEIN L36coord: 13..63
IPR000509Ribosomal protein L36ePROSITEPS01190RIBOSOMAL_L36Ecoord: 33..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58565contigEcto-sp13_S_contig58565:669..860 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58565.16346.1mRNA_Ecto-sp13_S_contig58565.16346.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig58565 669..860 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig58565.16346.1 ID=prot_Ecto-sp13_S_contig58565.16346.1|Name=mRNA_Ecto-sp13_S_contig58565.16346.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
RPCSSHPLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAE
KRIYKFAKRRVRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038097L36e_sf
IPR000509Ribosomal_L36e