mRNA_Ecto-sp13_S_contig58565.16346.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58565.16346.1
Unique NamemRNA_Ecto-sp13_S_contig58565.16346.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: B7ZGM7_9PHAE (60S ribosomal protein L36 (Fragment) n=3 Tax=Phaeophyceae TaxID=2870 RepID=B7ZGM7_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.420e-23
Identity = 50/63 (79.37%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 RPCSSHPLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRVRT 189
            R   + P   + RLG RVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRR+ T
Sbjct:   23 RAQKARPSHHKGRLGKRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGT 85
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BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: A0A835YST3_9STRA (60S ribosomal protein L36 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST3_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.270e-19
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    4 PCSSHPLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRVRT 189
            P    P   + RLG RV +VR+VVREVAGLMPYEKRILDMIK GGASAEKR+YKFAK+R+ T
Sbjct:   17 PKKPKPSARKGRLGKRVSVVRQVVREVAGLMPYEKRILDMIKVGGASAEKRMYKFAKKRLGT 78
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BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: F0YH51_AURAN (60S ribosomal protein L36 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YH51_AURAN)

HSP 1 Score: 80.1 bits (196), Expect = 3.580e-18
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   10 SSHPLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRVRT 189
            +  P   + RL  R K+VREVVREVAGL+PYEKRILDMIKTGGAS+EKR+YKFAK R+ T
Sbjct:   12 AQRPKHRKGRLSARTKVVREVVREVAGLVPYEKRILDMIKTGGASSEKRMYKFAKMRLGT 71
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BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: F0WSK9_9STRA (60S ribosomal protein L36 n=2 Tax=Albugo TaxID=65356 RepID=F0WSK9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.160e-18
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 RPCSSHPLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRVRT 189
            R   + P   + R G + K+VR++VREV GLMPYEKRILDMIK+GG+SAEKRIYKF+K+R+ T
Sbjct:   19 RQIPARPASKKGRCGKKTKLVRQIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRLGT 81
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BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: M4BXW6_HYAAE (60S ribosomal protein L36 n=21 Tax=Peronosporaceae TaxID=4777 RepID=M4BXW6_HYAAE)

HSP 1 Score: 79.3 bits (194), Expect = 9.410e-18
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:   19 PLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRVRT 189
            P   + R G + K+VRE+VREV GLMPYEKRILDMIK+GG+SAEKRIYKF+K+R+ T
Sbjct:   25 PASRKGRAGKKTKLVREIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRLGT 81
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BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: H3G707_PHYRM (60S ribosomal protein L36 n=4 Tax=Oomycota TaxID=4762 RepID=H3G707_PHYRM)

HSP 1 Score: 79.0 bits (193), Expect = 1.050e-17
Identity = 38/60 (63.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:   10 SSHPLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRVRT 189
            ++ P   + R G + K+VR++VREV GLMPYEKRILDMIK+GG+SAEKRIYKF+K+R+ T
Sbjct:   19 AARPASRKGRAGKKTKLVRDIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRLGT 78
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BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: B8BZT3_THAPS (60S ribosomal protein L36 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZT3_THAPS)

HSP 1 Score: 78.2 bits (191), Expect = 2.620e-17
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:   10 SSHPLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRV 183
            ++ P + + RLG R  + RE+ REVAGL PYE+RILDMIKTGG+SA+KRIYKFAKRR+
Sbjct:   22 AARPSQSKGRLGKRTALCREIAREVAGLSPYERRILDMIKTGGSSADKRIYKFAKRRL 79
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BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: A0A5D6XYW5_9STRA (60S ribosomal protein L36 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYW5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.020e-17
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:   19 PLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRVRT 189
            P   + R G ++K+VR VVREV GLMPYEKRILDMIK+GG+SAEKRIYKF+K+R+ T
Sbjct:   58 PASRKGRAGKKIKLVRSVVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRLGT 114
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BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: A0A7R9ZLZ7_9STRA (60S ribosomal protein L36 n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZLZ7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.020e-17
Identity = 38/48 (79.17%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:   40 LGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRV 183
            LG R KMVRE++REVAGL PYE+RILDMIKTGG++A+KRIYKFAKRR+
Sbjct:   91 LGERTKMVRELIREVAGLSPYERRILDMIKTGGSAADKRIYKFAKRRL 138
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BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Match: K0T5I4_THAOC (60S ribosomal protein L36 n=2 Tax=Thalassiosirales TaxID=33847 RepID=K0T5I4_THAOC)

HSP 1 Score: 77.4 bits (189), Expect = 5.270e-17
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 RPCSSHPLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRV 183
            R  ++ P R + +LG R  + RE+ REVAGL PYE+RILDMIKTGG++A+KRIYKFAKRR+
Sbjct:   19 RERAAKPSRTKGKLGKRTALCREIAREVAGLSPYERRILDMIKTGGSAADKRIYKFAKRRL 79
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58565.16346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7ZGM7_9PHAE2.420e-2379.3760S ribosomal protein L36 (Fragment) n=3 Tax=Phaeo... [more]
A0A835YST3_9STRA1.270e-1970.9760S ribosomal protein L36 n=1 Tax=Tribonema minus ... [more]
F0YH51_AURAN3.580e-1870.0060S ribosomal protein L36 n=1 Tax=Aureococcus anop... [more]
F0WSK9_9STRA9.160e-1861.9060S ribosomal protein L36 n=2 Tax=Albugo TaxID=653... [more]
M4BXW6_HYAAE9.410e-1868.4260S ribosomal protein L36 n=21 Tax=Peronosporaceae... [more]
H3G707_PHYRM1.050e-1763.3360S ribosomal protein L36 n=4 Tax=Oomycota TaxID=4... [more]
B8BZT3_THAPS2.620e-1765.5260S ribosomal protein L36 n=1 Tax=Thalassiosira ps... [more]
A0A5D6XYW5_9STRA3.020e-1768.4260S ribosomal protein L36 n=1 Tax=Pythium brassicu... [more]
A0A7R9ZLZ7_9STRA4.020e-1779.1760S ribosomal protein L36 n=1 Tax=Craspedostauros ... [more]
K0T5I4_THAOC5.270e-1762.3060S ribosomal protein L36 n=2 Tax=Thalassiosirales... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58565contigEcto-sp13_S_contig58565:669..860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score96.7
Seed ortholog evalue4.3e-18
Seed eggNOG ortholog2880.D7FQH6
Preferred nameRPL36
Model size192
KEGG koko:K02920,ko:K03115,ko:K14566,ko:K17973
KEGG Pathwayko03008,ko03010,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map03010,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0031090,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051726,GO:0055044,GO:0060255,GO:0060322,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.cytoplasmic translation
EggNOG OGsCOG5051@1,KOG3452@2759
Cds size192
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03009,ko03011,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463813.2080407-CDS-Ecto-sp13_S_contig58565:668..8601681463813.2080407-CDS-Ecto-sp13_S_contig58565:668..860Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58565 669..860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58565.16346.1prot_Ecto-sp13_S_contig58565.16346.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58565 669..860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58565.16346.1

>prot_Ecto-sp13_S_contig58565.16346.1 ID=prot_Ecto-sp13_S_contig58565.16346.1|Name=mRNA_Ecto-sp13_S_contig58565.16346.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
RPCSSHPLRFRQRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAE
KRIYKFAKRRVRT*
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mRNA from alignment at Ecto-sp13_S_contig58565:669..860-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58565.16346.1 ID=mRNA_Ecto-sp13_S_contig58565.16346.1|Name=mRNA_Ecto-sp13_S_contig58565.16346.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58565:669..860- (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCCCTGCTCCTCACACCCCCTTCGTTTTCGTCAGCGTCTCGGCAACCG
CGTCAAGATGGTGCGGGAAGTCGTCCGCGAGGTGGCGGGCCTGATGCCCT
ACGAGAAGCGCATCCTCGACATGATCAAGACGGGCGGCGCGTCCGCGGAA
AAGCGCATCTACAAGTTTGCCAAGCGGAGGGTGAGAACATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58565:669..860-

>mRNA_Ecto-sp13_S_contig58565.16346.1 ID=mRNA_Ecto-sp13_S_contig58565.16346.1|Name=mRNA_Ecto-sp13_S_contig58565.16346.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58565:669..860- (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCCCTGCTCCTCACACCCCCTTCGTTTTCGTCAGCGTCTCGGCAACCG
CGTCAAGATGGTGCGGGAAGTCGTCCGCGAGGTGGCGGGCCTGATGCCCT
ACGAGAAGCGCATCCTCGACATGATCAAGACGGGCGGCGCGTCCGCGGAA
AAGCGCATCTACAAGTTTGCCAAGCGGAGGGTGAGAACATAG
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