prot_Ecto-sp13_S_contig5852.16341.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5852.16341.1
Unique Nameprot_Ecto-sp13_S_contig5852.16341.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length76
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5852.16341.1 vs. uniprot
Match: A0A6C0AG44_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0AG44_9ZZZZ)

HSP 1 Score: 53.9 bits (128), Expect = 8.500e-8
Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = 0 
Query:    5 LEAILVGVALVFATYVSVAITTRIVPSPK-----DNFNKFHIMEISIFVAGVLTHVFFEKFGLNKLYCSSGHACL 74
            +EAI VG++L+    V   +  +    P+      N+NK+HIME+++F+ G L H+ FE  GLNK Y  +G + L
Sbjct:    9 IEAIFVGISLILVGNVVGFLVGKYYIKPELPIECANYNKYHIMEVTLFLTGFLLHILFEISGLNKFYIKNGASAL 83
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5852.16341.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6C0AG44_9ZZZZ8.500e-837.33Uncharacterized protein n=1 Tax=viral metagenome T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 39..57
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 58..75
NoneNo IPR availableTMHMMTMhelixcoord: 39..57
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5852contigEcto-sp13_S_contig5852:8143..8370 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5852.16341.1mRNA_Ecto-sp13_S_contig5852.16341.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5852 8134..8370 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5852.16341.1 ID=prot_Ecto-sp13_S_contig5852.16341.1|Name=mRNA_Ecto-sp13_S_contig5852.16341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
MHYTLEAILVGVALVFATYVSVAITTRIVPSPKDNFNKFHIMEISIFVAG
VLTHVFFEKFGLNKLYCSSGHACLN*
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