mRNA_Ecto-sp13_S_contig5852.16341.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5852.16341.1
Unique NamemRNA_Ecto-sp13_S_contig5852.16341.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5852.16341.1 vs. uniprot
Match: A0A6C0AG44_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0AG44_9ZZZZ)

HSP 1 Score: 53.9 bits (128), Expect = 9.490e-8
Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = 1 
Query:   22 LEAILVGVALVFATYVSVAITTRIVPSPK-----DNFNKFHIMEISIFVAGVLTHVFFEKFGLNKLYCSSGHACL 231
            +EAI VG++L+    V   +  +    P+      N+NK+HIME+++F+ G L H+ FE  GLNK Y  +G + L
Sbjct:    9 IEAIFVGISLILVGNVVGFLVGKYYIKPELPIECANYNKYHIMEVTLFLTGFLLHILFEISGLNKFYIKNGASAL 83
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5852.16341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6C0AG44_9ZZZZ9.490e-837.33Uncharacterized protein n=1 Tax=viral metagenome T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5852contigEcto-sp13_S_contig5852:8134..8370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size237
Hectar predicted targeting categorysignal peptide
Exons1
Cds size228
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463812.774278-UTR-Ecto-sp13_S_contig5852:8133..81421681463812.774278-UTR-Ecto-sp13_S_contig5852:8133..8142Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5852 8134..8142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463812.786668-CDS-Ecto-sp13_S_contig5852:8142..83701681463812.786668-CDS-Ecto-sp13_S_contig5852:8142..8370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5852 8143..8370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5852.16341.1prot_Ecto-sp13_S_contig5852.16341.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5852 8143..8370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5852.16341.1

>prot_Ecto-sp13_S_contig5852.16341.1 ID=prot_Ecto-sp13_S_contig5852.16341.1|Name=mRNA_Ecto-sp13_S_contig5852.16341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
MHYTLEAILVGVALVFATYVSVAITTRIVPSPKDNFNKFHIMEISIFVAG
VLTHVFFEKFGLNKLYCSSGHACLN*
back to top

mRNA from alignment at Ecto-sp13_S_contig5852:8134..8370+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5852.16341.1 ID=mRNA_Ecto-sp13_S_contig5852.16341.1|Name=mRNA_Ecto-sp13_S_contig5852.16341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5852:8134..8370+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAGCAATAATGCACTACACGTTGGAAGCCATCCTCGTCGGGGTCGCACT
CGTTTTTGCAACCTACGTGTCCGTTGCCATTACCACGAGAATTGTTCCCT
CCCCCAAGGACAATTTTAACAAGTTTCACATCATGGAGATCAGCATCTTT
GTGGCCGGAGTCTTGACTCACGTGTTCTTCGAGAAGTTCGGGCTCAACAA
ACTTTATTGTTCATCTGGTCACGCCTGTTTGAACTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5852:8134..8370+

>mRNA_Ecto-sp13_S_contig5852.16341.1 ID=mRNA_Ecto-sp13_S_contig5852.16341.1|Name=mRNA_Ecto-sp13_S_contig5852.16341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5852:8134..8370+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACTACACGTTGGAAGCCATCCTCGTCGGGGTCGCACTCGTTTTTGC
AACCTACGTGTCCGTTGCCATTACCACGAGAATTGTTCCCTCCCCCAAGG
ACAATTTTAACAAGTTTCACATCATGGAGATCAGCATCTTTGTGGCCGGA
GTCTTGACTCACGTGTTCTTCGAGAAGTTCGGGCTCAACAAACTTTATTG
TTCATCTGGTCACGCCTGTTTGAACTGA
back to top