prot_Ecto-sp13_S_contig582.16281.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig582.16281.1
Unique Nameprot_Ecto-sp13_S_contig582.16281.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length184
Homology
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BLAST of mRNA_Ecto-sp13_S_contig582.16281.1 vs. uniprot
Match: D7FIV9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV9_ECTSI)

HSP 1 Score: 343 bits (879), Expect = 3.680e-116
Identity = 164/183 (89.62%), Postives = 167/183 (91.26%), Query Frame = 0 
Query:    1 CCSFFQGIRPTYSNNVIKVAVPEPVPGPTSGSVGRYALVNLLSKGLFDGPSEYCGWCSQNETAGLMNIRWQYLRDAPSTLLFSLERSHEQSRDSQDAVQVIIPAILGMNRFTERRDPPGTNCYDLVGVIHAQSSAASSDWAAYTRSPGGRWILHNGQDEVDVNERDVLTNKAQILRYAKRGSV 183
            CC    GIRPTYSNN+IKVAVP PVPGPTSGSVGRYALVNLLSKGLF GPSEYCGWCSQNET GLMNIRWQYLRDAPSTLLFSLERS EQ R+SQDAV+VIIP ILGMNRFTERRDPPG NCYDLVGVIH QSSAASSDW AYTRSPGGRWI HNGQDEVDVNERDVLTN A ILRYAKRGSV
Sbjct:  189 CCG--HGIRPTYSNNIIKVAVPNPVPGPTSGSVGRYALVNLLSKGLFHGPSEYCGWCSQNETGGLMNIRWQYLRDAPSTLLFSLERSREQ-RNSQDAVKVIIPTILGMNRFTERRDPPGANCYDLVGVIHGQSSAASSDWVAYTRSPGGRWIRHNGQDEVDVNERDVLTNNAHILRYAKRGSV 368
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig582.16281.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIV9_ECTSI3.680e-11689.62USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.70.10coord: 24..182
e-value: 2.3E-10
score: 42.4
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 73..177
e-value: 7.3E-7
score: 28.9
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 1..180
score: 14.554
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 52..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig582contigEcto-sp13_S_contig582:21625..23624 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig582.16281.1mRNA_Ecto-sp13_S_contig582.16281.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig582 21625..23624 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig582.16281.1 ID=prot_Ecto-sp13_S_contig582.16281.1|Name=mRNA_Ecto-sp13_S_contig582.16281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=184bp
CCSFFQGIRPTYSNNVIKVAVPEPVPGPTSGSVGRYALVNLLSKGLFDGP
SEYCGWCSQNETAGLMNIRWQYLRDAPSTLLFSLERSHEQSRDSQDAVQV
IIPAILGMNRFTERRDPPGTNCYDLVGVIHAQSSAASSDWAAYTRSPGGR
WILHNGQDEVDVNERDVLTNKAQILRYAKRGSV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001394Peptidase_C19_UCH
IPR028889USP_dom
IPR038765Papain-like_cys_pep_sf