mRNA_Ecto-sp13_S_contig582.16281.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig582.16281.1
Unique NamemRNA_Ecto-sp13_S_contig582.16281.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig582.16281.1 vs. uniprot
Match: D7FIV9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV9_ECTSI)

HSP 1 Score: 343 bits (879), Expect = 3.680e-116
Identity = 164/183 (89.62%), Postives = 167/183 (91.26%), Query Frame = 1 
Query:    1 CCSFFQGIRPTYSNNVIKVAVPEPVPGPTSGSVGRYALVNLLSKGLFDGPSEYCGWCSQNETAGLMNIRWQYLRDAPSTLLFSLERSHEQSRDSQDAVQVIIPAILGMNRFTERRDPPGTNCYDLVGVIHAQSSAASSDWAAYTRSPGGRWILHNGQDEVDVNERDVLTNKAQILRYAKRGSV 549
            CC    GIRPTYSNN+IKVAVP PVPGPTSGSVGRYALVNLLSKGLF GPSEYCGWCSQNET GLMNIRWQYLRDAPSTLLFSLERS EQ R+SQDAV+VIIP ILGMNRFTERRDPPG NCYDLVGVIH QSSAASSDW AYTRSPGGRWI HNGQDEVDVNERDVLTN A ILRYAKRGSV
Sbjct:  189 CCG--HGIRPTYSNNIIKVAVPNPVPGPTSGSVGRYALVNLLSKGLFHGPSEYCGWCSQNETGGLMNIRWQYLRDAPSTLLFSLERSREQ-RNSQDAVKVIIPTILGMNRFTERRDPPGANCYDLVGVIHGQSSAASSDWVAYTRSPGGRWIRHNGQDEVDVNERDVLTNNAHILRYAKRGSV 368
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig582.16281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIV9_ECTSI3.680e-11689.62USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig582contigEcto-sp13_S_contig582:21625..23624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size552
Hectar predicted targeting categoryother localisation
Exons5
Cds size552
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463808.5060499-CDS-Ecto-sp13_S_contig582:21624..218301681463808.5060499-CDS-Ecto-sp13_S_contig582:21624..21830Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig582 21625..21830 -
1681463808.515237-CDS-Ecto-sp13_S_contig582:22434..225081681463808.515237-CDS-Ecto-sp13_S_contig582:22434..22508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig582 22435..22508 -
1681463808.5239336-CDS-Ecto-sp13_S_contig582:22646..227321681463808.5239336-CDS-Ecto-sp13_S_contig582:22646..22732Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig582 22647..22732 -
1681463808.5332606-CDS-Ecto-sp13_S_contig582:23035..230891681463808.5332606-CDS-Ecto-sp13_S_contig582:23035..23089Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig582 23036..23089 -
1681463808.543292-CDS-Ecto-sp13_S_contig582:23492..236241681463808.543292-CDS-Ecto-sp13_S_contig582:23492..23624Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig582 23493..23624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig582.16281.1prot_Ecto-sp13_S_contig582.16281.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig582 21625..23624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig582.16281.1

>prot_Ecto-sp13_S_contig582.16281.1 ID=prot_Ecto-sp13_S_contig582.16281.1|Name=mRNA_Ecto-sp13_S_contig582.16281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=184bp
CCSFFQGIRPTYSNNVIKVAVPEPVPGPTSGSVGRYALVNLLSKGLFDGP
SEYCGWCSQNETAGLMNIRWQYLRDAPSTLLFSLERSHEQSRDSQDAVQV
IIPAILGMNRFTERRDPPGTNCYDLVGVIHAQSSAASSDWAAYTRSPGGR
WILHNGQDEVDVNERDVLTNKAQILRYAKRGSV*
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mRNA from alignment at Ecto-sp13_S_contig582:21625..23624-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig582.16281.1 ID=mRNA_Ecto-sp13_S_contig582.16281.1|Name=mRNA_Ecto-sp13_S_contig582.16281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2000bp|location=Sequence derived from alignment at Ecto-sp13_S_contig582:21625..23624- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTTGTTCATTTTTTCAGGGTATCAGGCCAACCTACAGTAACAACGTCAT
CAAGGTCGCGGTACCAGAGCCCGTCCCCGGGCCGACATCAGGGAGCGTTG
GACGCTACGCTTTGGTCAACTTGCTTAGCAAGGTGCAGTGTGTGATGCTT
TACGGTGTGGCATCTGTTGCATGAAGGTGTTTCGAACATGAGGTCGGGGC
GCTGTTCAAAGTTTGGTTGTATGCTACACACTGTGCATCGGAGGGGGTCT
CTCAGTCTTTCGGGCTCCCTTCGCAAATGCCCCCCGTCCGGGGGCATTCC
CCAAGAGCTGCCCGGGGTGTAATTTCCAGGTCATGCTCTATACGCCCCCC
TGAGAAGTTTCATCGGGGCTGTAATATAAAGTGCAGACGGTGTCACCATC
TCTCTGATCAGCCAACGGCCGTACTCTCTGGGCGAAGGTTTGGGAGGAAG
CGCGATTTGGGTGAAACATTCCTGACGGAGAACCCCACGCCTAAACCTCA
GTTTCTCGCCTTCGGCTTGTGATGCACAATCACAGGGACTGTTTGATGGC
CCATCCGAGTACTGCGGGTGGTGCTCGCAAAACGAAACTGTGAGTTATTG
TCCCCTATGGCACCTCCGAGTTGGGCCGCTGTACTATGCGATCCGGCGTA
CGTAGCATTGAAGTGTACATTACTTGTTCTCCGCGGCGCGCGAAAACAGC
GACAGCTCTCGCGTATTCTCCAGGCTTTTCGCTGAGCCAGAGAGCCGATC
AACTTGTTGGTGATCGGAAAACTGGACGTGTCCCGTCATTGGTGGTTCGC
TGAAGGAAAATCGCTGTGTTGACGAGTATCCTCTCCCCCCCCGCCCGCGC
GCATGCGATTGGACTATGTCTTTCGGAATACGCTGGCATCAGGCGGGCCT
TATGAATATTCGCTGGCAGTACCTTCGGGACGCGCCTTCCACCCTTCTGT
TCTCTCTGGAACGATCTCACGAACAAAGGTATGGGTGGGGGTGGAAGGTG
GGGTCGCGGCAAGGGAGGTGTGAAAGAGAGAGACGAGTACGTAGATCCAG
GGACTGTGAATGTTGCACATCCCTCCGTTTATCTCATTGTCCATGCTTGT
TCCGCCGAAATTCCAGCAGGGACTCCCAAGATGCCGTGCAAGTTATTATC
CCTGCCATCCTCGGCATGAACCGCTTCACCGAAAGACGAGGTAGGCCCAG
TAACACAAAACGGTTGCAATTCTCCGCCGTACAAATACAACGCACAGATC
GGTCGACTGCAAATGCATTAAGCTTTCGACGATTCGGACACTGCGTTCGT
GGTAATTCGCAATTGAGGGAAGAAACACACCGAAGCGTCCTCGCTTTTTT
CTTTGGAGACAAGCAACGTAGAGCCATCGTTTAGTCGGACCCCAGTCGGG
GGCCCCTTCGCAAATGCGACGAGAACACATGACACGCGGATACGCCGAGC
AATAGCTACAAATGGTTTTGCTGAGAACTTAGCCTCGACGTGCGTTCAAG
AGAACTTGAAGAGCGGCAGCGGCACACAAAGCGACCAATCCTTCAATACG
TCTGCATTTTGTGCCACCAGCAGAAAAACCGATACTGGCGTCGCAACCGA
GAGGTGTGGAAAATGTTTTGTCATCGCTAACCGGCTGACCTATGAGCAGT
GTATGTGTGTCAATCCCATGCAGGAAGAATAGATGACTTCGATTCCAACG
GACGCTTGAAAAATGACAATGGCGCTGACAAGGCAGCGTAGAAGCCGGCT
AATCCCACTCTACCTCTCATGCCGTGTCCGTCTACGGTGCACAGACCCCC
CTGGCACGAATTGTTACGATCTGGTCGGTGTGATTCACGCACAAAGTTCC
GCTGCCTCTTCGGACTGGGCGGCCTACACCCGCTCACCGGGCGGAAGGTG
GATTCTCCACAACGGCCAAGACGAGGTCGATGTAAACGAGCGGGATGTCT
TGACCAACAAGGCCCAAATACTGCGCTACGCCAAGCGCGGCAGTGTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig582:21625..23624-

>mRNA_Ecto-sp13_S_contig582.16281.1 ID=mRNA_Ecto-sp13_S_contig582.16281.1|Name=mRNA_Ecto-sp13_S_contig582.16281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig582:21625..23624- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTTGTTCATTTTTTCAGGGTATCAGGCCAACCTACAGTAACAACGTCAT
CAAGGTCGCGGTACCAGAGCCCGTCCCCGGGCCGACATCAGGGAGCGTTG
GACGCTACGCTTTGGTCAACTTGCTTAGCAAGGGACTGTTTGATGGCCCA
TCCGAGTACTGCGGGTGGTGCTCGCAAAACGAAACTGCGGGCCTTATGAA
TATTCGCTGGCAGTACCTTCGGGACGCGCCTTCCACCCTTCTGTTCTCTC
TGGAACGATCTCACGAACAAAGCAGGGACTCCCAAGATGCCGTGCAAGTT
ATTATCCCTGCCATCCTCGGCATGAACCGCTTCACCGAAAGACGAGACCC
CCCTGGCACGAATTGTTACGATCTGGTCGGTGTGATTCACGCACAAAGTT
CCGCTGCCTCTTCGGACTGGGCGGCCTACACCCGCTCACCGGGCGGAAGG
TGGATTCTCCACAACGGCCAAGACGAGGTCGATGTAAACGAGCGGGATGT
CTTGACCAACAAGGCCCAAATACTGCGCTACGCCAAGCGCGGCAGTGTCT
AG
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