prot_Ecto-sp13_S_contig5759.16177.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5759.16177.1
Unique Nameprot_Ecto-sp13_S_contig5759.16177.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length303
Homology
BLAST of mRNA_Ecto-sp13_S_contig5759.16177.1 vs. uniprot
Match: A0A6H5KMF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF0_9PHAE)

HSP 1 Score: 330 bits (846), Expect = 1.870e-103
Identity = 242/313 (77.32%), Postives = 249/313 (79.55%), Query Frame = 0
Query:    1 MLSVGPLGDDSEAVRLEAMAGGGATXXXXXXXXXSV--RSIHAIRCFNAQTDLSALDLLRNGRLGDDXXXXXXXXKVLATAAAGNALGRGKGLLDLDSVPVLPFLLSGGLAHDDCNNS--------RXXXXXXXXXXXXXXXXXXXXXXXSGERVFDLCLTRRERNAEVVQTVEAFRLNRDQARLLWRCATWFRPAEAAGESDDDGGESDADGKDGAGTRGRDEEEKGENHEQGRPTEKGGGGKAGEDGAPVVLLHGVFGAGKSLTLVALCVMVDRIATADARLRPSRGLRPRPKAEQIRVLLASGTNVAVDR 303
            MLSVGPLGDDSEA+RLEA A GGA XXXXXXXXX    RSIHAIRCFNAQTDLSALDLLRNGRLGDDXXXXXXXX         NALGRGKGLLDLDSVPVL FLLSGGLA DDCN+S         XXXXXXXXXXXXXXXXXXXXXXXSG+RVFDLCLTR ERNAEV QTVEAFRLNRDQARLLWRCATWFRPAEAAG   D+                            GRPTE+GGGG AGEDGAPVVL+HGVFGAGKSLTLVALCVMVDRIA ADARLR SRGL PRPKAEQ+RVLLASGTNVAVDR
Sbjct:    1 MLSVGPLGDDSEALRLEATARGGAXXXXXXXXXXXXXSRSIHAIRCFNAQTDLSALDLLRNGRLGDDXXXXXXXXXXXXXXXXXNALGRGKGLLDLDSVPVLRFLLSGGLAPDDCNSSGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDRVFDLCLTRGERNAEVSQTVEAFRLNRDQARLLWRCATWFRPAEAAG---DNXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPTEEGGGGMAGEDGAPVVLVHGVFGAGKSLTLVALCVMVDRIAAADARLRSSRGLPPRPKAEQVRVLLASGTNVAVDR 310          
BLAST of mRNA_Ecto-sp13_S_contig5759.16177.1 vs. uniprot
Match: D8LH01_ECTSI (Prematurely terminated mRNA decay factor-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH01_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.560e-26
Identity = 126/306 (41.18%), Postives = 137/306 (44.77%), Query Frame = 0
Query:    1 MLSVGPLGDDSEAVRLEAMAGGGATXXXXXXXXX---SVRSIHAIRCFNAQTDLSALDLLRNGRLGDDXXXXXXXXKVLATAAAGNALGRGKGLLDLDSVPVLPFLLSGGLAHDDCNNSRXXXXXXXXXXXXXXXXXXXXXXXSGERVFDLCLTRRERNAEVVQTVEAFRLNRDQARLLWRCATWFRPAEAAGESDDDGGESDADGKDGAGTRGRDEEEKGENHEQGRPTEKGGGGKAGEDGAPVVLLHGVFGAGKSLTLVALCVMVDRIATADARLRPSRGLRPRPKAEQIRVLLASGTNVAVDR 303
            MLSVGPLGDDSEA+RLEAMAGG   XXXXXXXXX   + RSIHAIRCFNAQT LSA+DLLRNGRLGDD  XXXXX K LATA               ++ PV    +  G A                                      +  T        VQ +E  R            A   R  E   +                                             E  AP +          +   VALCVMVDRIAT DARLRPSRGL PRPKAEQIRVLLASGTNVAVDR
Sbjct:    1 MLSVGPLGDDSEALRLEAMAGGXXXXXXXXXXXXXXXNARSIHAIRCFNAQTHLSAVDLLRNGRLGDDDGXXXXXGKALATATGST-----------ETRPVFSGAVRPGSA-------------------------------PLRAPVTMATTEXXXXXXXVQELE--RETXXXXXXXXXXAVRRRREEGGWQ---------------------------------------------ERTAPRLFSC-------TACSVALCVMVDRIATEDARLRPSRGLPPRPKAEQIRVLLASGTNVAVDR 210          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5759.16177.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KMF0_9PHAE1.870e-10377.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH01_ECTSI1.560e-2641.18Prematurely terminated mRNA decay factor-like n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5759contigEcto-sp13_S_contig5759:4245..7774 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5759.16177.1mRNA_Ecto-sp13_S_contig5759.16177.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5759 308..7774 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5759.16177.1 ID=prot_Ecto-sp13_S_contig5759.16177.1|Name=mRNA_Ecto-sp13_S_contig5759.16177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=303bp
MLSVGPLGDDSEAVRLEAMAGGGATGGGGSGGSSSVRSIHAIRCFNAQTD
LSALDLLRNGRLGDDDDDDDGNGKVLATAAAGNALGRGKGLLDLDSVPVL
PFLLSGGLAHDDCNNSRNNSSSKNGSSNSSNSSSKSSSSSSGERVFDLCL
TRRERNAEVVQTVEAFRLNRDQARLLWRCATWFRPAEAAGESDDDGGESD
ADGKDGAGTRGRDEEEKGENHEQGRPTEKGGGGKAGEDGAPVVLLHGVFG
AGKSLTLVALCVMVDRIATADARLRPSRGLRPRPKAEQIRVLLASGTNVA
VDR
back to top