mRNA_Ecto-sp13_S_contig5759.16177.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5759.16177.1
Unique NamemRNA_Ecto-sp13_S_contig5759.16177.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5759.16177.1 vs. uniprot
Match: A0A6H5KMF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF0_9PHAE)

HSP 1 Score: 330 bits (847), Expect = 1.010e-95
Identity = 242/313 (77.32%), Postives = 249/313 (79.55%), Query Frame = 3 
Query: 1926 MLSVGPLGDDSEAVRLEAMAGGGATXXXXXXXXXSV--RSIHAIRCFNAQTDLSALDLLRNGRLGDDXXXXXXXXKVLATAAAGNALGRGKGLLDLDSVPVLPFLLSGGLAHDDCNNS--------RXXXXXXXXXXXXXXXXXXXXXXXSGERVFDLCLTRRERNAEVVQTVEAFRLNRDQARLLWRCATWFRPAEAAGESDDDGGESDADGKDGAGTRGRDEEEKGENHEQGRPTEKGGGGKAGEDGAPVVLLHGVFGAGKSLTLVALCVMVDRIATADARLRPSRGLRPRPKAEQIRVLLASGTNVAVDR 2834
            MLSVGPLGDDSEA+RLEA A GGA XXXXXXXXX    RSIHAIRCFNAQTDLSALDLLRNGRLGDDXXXXXXXX         NALGRGKGLLDLDSVPVL FLLSGGLA DDCN+S         XXXXXXXXXXXXXXXXXXXXXXXSG+RVFDLCLTR ERNAEV QTVEAFRLNRDQARLLWRCATWFRPAEAAG   D+                            GRPTE+GGGG AGEDGAPVVL+HGVFGAGKSLTLVALCVMVDRIA ADARLR SRGL PRPKAEQ+RVLLASGTNVAVDR
Sbjct:    1 MLSVGPLGDDSEALRLEATARGGAXXXXXXXXXXXXXSRSIHAIRCFNAQTDLSALDLLRNGRLGDDXXXXXXXXXXXXXXXXXNALGRGKGLLDLDSVPVLRFLLSGGLAPDDCNSSGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDRVFDLCLTRGERNAEVSQTVEAFRLNRDQARLLWRCATWFRPAEAAG---DNXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPTEEGGGGMAGEDGAPVVLVHGVFGAGKSLTLVALCVMVDRIAAADARLRSSRGLPPRPKAEQVRVLLASGTNVAVDR 310
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5759.16177.1 vs. uniprot
Match: D8LH01_ECTSI (Prematurely terminated mRNA decay factor-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH01_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 3.570e-24
Identity = 126/306 (41.18%), Postives = 137/306 (44.77%), Query Frame = 3 
Query: 1926 MLSVGPLGDDSEAVRLEAMAGGGATXXXXXXXXX---SVRSIHAIRCFNAQTDLSALDLLRNGRLGDDXXXXXXXXKVLATAAAGNALGRGKGLLDLDSVPVLPFLLSGGLAHDDCNNSRXXXXXXXXXXXXXXXXXXXXXXXSGERVFDLCLTRRERNAEVVQTVEAFRLNRDQARLLWRCATWFRPAEAAGESDDDGGESDADGKDGAGTRGRDEEEKGENHEQGRPTEKGGGGKAGEDGAPVVLLHGVFGAGKSLTLVALCVMVDRIATADARLRPSRGLRPRPKAEQIRVLLASGTNVAVDR 2834
            MLSVGPLGDDSEA+RLEAMAGG   XXXXXXXXX   + RSIHAIRCFNAQT LSA+DLLRNGRLGDD  XXXXX K LATA               ++ PV    +  G A                                      +  T        VQ +E  R            A   R  E   +                                             E  AP +          +   VALCVMVDRIAT DARLRPSRGL PRPKAEQIRVLLASGTNVAVDR
Sbjct:    1 MLSVGPLGDDSEALRLEAMAGGXXXXXXXXXXXXXXXNARSIHAIRCFNAQTHLSAVDLLRNGRLGDDDGXXXXXGKALATATGST-----------ETRPVFSGAVRPGSA-------------------------------PLRAPVTMATTEXXXXXXXVQELE--RETXXXXXXXXXXAVRRRREEGGWQ---------------------------------------------ERTAPRLFSC-------TACSVALCVMVDRIATEDARLRPSRGLPPRPKAEQIRVLLASGTNVAVDR 210
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5759.16177.1 vs. uniprot
Match: A0A7S4NSY6_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NSY6_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 5.290e-5
Identity = 46/144 (31.94%), Postives = 61/144 (42.36%), Query Frame = 3 
Query: 2406 QTVEAFRLNRDQARLLWRCATWF-RPAEAAGESDDDGGESDADGKDGAGTRGRDEEEKGENHEQGRPTEKGGGGKAGEDGAPVVLLHGVFGAGKSLTLVALCVMVDRIATADARLRPSRGLRPRPKAEQIRVLLASGTNVAVDR 2834
            + ++ FRLN DQ  +LWRCA+W  RP +    S                TR RD E                           VL+HGVFG+GKS  LVAL + +   A  D            P  E++R+ + + TNVAVDR
Sbjct:  158 EVIKRFRLNEDQVEVLWRCASWLVRPLQELDLS----------------TR-RDRE--------------------------CVLVHGVFGSGKSYLLVALVIFLTTCADRD------------PSLEKLRIFICAATNVAVDR 246
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5759.16177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KMF0_9PHAE1.010e-9577.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH01_ECTSI3.570e-2441.18Prematurely terminated mRNA decay factor-like n=1 ... [more]
A0A7S4NSY6_9EUKA5.290e-531.94Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5759contigEcto-sp13_S_contig5759:308..7774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score120.6
Seed ortholog evalue1.3e-24
Seed eggNOG ortholog2880.D8LH01
Model size2834
KEGG koko:K10706
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsCOG1112@1,KOG1802@2759
Cds size909
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5759.16177.1prot_Ecto-sp13_S_contig5759.16177.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5759 4245..7774 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463797.967417-UTR-Ecto-sp13_S_contig5759:307..16731681463797.967417-UTR-Ecto-sp13_S_contig5759:307..1673Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5759 308..1673 +
1681463797.9829955-UTR-Ecto-sp13_S_contig5759:2662..30501681463797.9829955-UTR-Ecto-sp13_S_contig5759:2662..3050Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5759 2663..3050 +
1681463798.0002894-UTR-Ecto-sp13_S_contig5759:3720..38631681463798.0002894-UTR-Ecto-sp13_S_contig5759:3720..3863Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5759 3721..3863 +
1681463798.0135052-UTR-Ecto-sp13_S_contig5759:4216..42441681463798.0135052-UTR-Ecto-sp13_S_contig5759:4216..4244Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5759 4217..4244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463798.0244482-CDS-Ecto-sp13_S_contig5759:4244..43881681463798.0244482-CDS-Ecto-sp13_S_contig5759:4244..4388Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5759 4245..4388 +
1681463798.0354526-CDS-Ecto-sp13_S_contig5759:4650..47471681463798.0354526-CDS-Ecto-sp13_S_contig5759:4650..4747Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5759 4651..4747 +
1681463798.0461044-CDS-Ecto-sp13_S_contig5759:5352..56851681463798.0461044-CDS-Ecto-sp13_S_contig5759:5352..5685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5759 5353..5685 +
1681463798.057354-CDS-Ecto-sp13_S_contig5759:5820..59941681463798.057354-CDS-Ecto-sp13_S_contig5759:5820..5994Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5759 5821..5994 +
1681463798.0681505-CDS-Ecto-sp13_S_contig5759:6554..65771681463798.0681505-CDS-Ecto-sp13_S_contig5759:6554..6577Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5759 6555..6577 +
1681463798.0826254-CDS-Ecto-sp13_S_contig5759:7636..77741681463798.0826254-CDS-Ecto-sp13_S_contig5759:7636..7774Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5759 7637..7774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5759.16177.1

>prot_Ecto-sp13_S_contig5759.16177.1 ID=prot_Ecto-sp13_S_contig5759.16177.1|Name=mRNA_Ecto-sp13_S_contig5759.16177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=303bp
MLSVGPLGDDSEAVRLEAMAGGGATGGGGSGGSSSVRSIHAIRCFNAQTD
LSALDLLRNGRLGDDDDDDDGNGKVLATAAAGNALGRGKGLLDLDSVPVL
PFLLSGGLAHDDCNNSRNNSSSKNGSSNSSNSSSKSSSSSSGERVFDLCL
TRRERNAEVVQTVEAFRLNRDQARLLWRCATWFRPAEAAGESDDDGGESD
ADGKDGAGTRGRDEEEKGENHEQGRPTEKGGGGKAGEDGAPVVLLHGVFG
AGKSLTLVALCVMVDRIATADARLRPSRGLRPRPKAEQIRVLLASGTNVA
VDR
back to top

mRNA from alignment at Ecto-sp13_S_contig5759:308..7774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5759.16177.1 ID=mRNA_Ecto-sp13_S_contig5759.16177.1|Name=mRNA_Ecto-sp13_S_contig5759.16177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7467bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5759:308..7774+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGCTGGACCGACGGCACCCTCGTATACCACCGCGGCAGCAACAAGCT
GCAGCTCCGCAACGACTCCGACACCCAGACCCTCGCTTCTGGAAAGGCAG
AGAGCGGTGGCGGCGGGGGAGCGGGTTGCGGTACATCGTTGCCGCAGCAG
CTGCGAGAGGGCGAGGAATTTCGAGTCGGCCGGTACGCCATCCAACTCGG
AGAAAGCAGGAGTAGCAGCGGCAGCGGTGGCGGTGACGGTAGCAGCGAGG
CGGTGGTGGCGACTGTTGGCGCCACCACTGCCGCCACCGGGATCAGGCTG
ATGGGACAACACATCCAACTTCAAAAGCCCACAACTGGTGGTGGTGGTGG
TTGTGGTGGTGCTGCTGGTATGGGGATGCCGATGGCCCGGAGGGGAAAGT
TCAAGGCGCCCGCAAGACTGGATGTGGGACAACCGAAGAAAGCAGGACAC
GTTTCACAGCCGAGGGAGCAGGAACGGGGGCAGCGGCAGGGCCAGAAACA
CCACCAGGAGAAGAAGCATGGGGAATTTCGTCGTCATCGTCGACCGCTGC
AACCGTTGACTTCCTTGTCATCTTCGACGCTGTCCCCCGCGGTTCATCTT
GAGCAGCAGCAGCAACCGCCACCAGCCACCGATGACATTGGCAACAACGG
GGTCACTTCCGGAGCCCCGCCGCTGCTGCCGCCGCCGCAGGTGCTGCCGC
CTGCGAAACGGAAAGTATTCGTCGCCCCATCCAAGACAACGCCCTACCAG
CAATCAACAAAGCCGCCGGCTGTGCCATTATTACCGTCCGGCCCTCTTCT
CCCATTGAAACGATGCGGCCTAGCCCGCCGCAGCCTACCGCCAGGAACGG
CAGAAGCGCCCGCCGCTACTAGTGGCGTCGCGATCGATACCAACGAGCGG
CCGCCGCCACCGCCGCCGCTACCCGCCGCCCCTCGAAGGTTGCAAAGCGC
GAAGGACAACACCGACAGCGCCGCCATGCTCATGCCGCGTTTCAAGCTTA
CGTTCGGCGGCGGGGGTGCGGGGAGCGGGGCAAGGAAAGAGTCGTCGGGG
CGGCACCCGTTGGCTGCGCCCGTTCACCAGCAACAGCAGCAACAGCAACG
ACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGTCAGCAGCAGCAGAAGC
AGCAGGCGAGTGTAGCCCCTCGTTCGGCGTCGAATGGAGAAGGATCGGGC
GGAGGTGTCTGGCCAACGAGGACGACATGGGTACCGAACGGCTTCGCGGA
CGAGGCGGCTTATCGGCGTGTCTTTTGTCGCGCCATGCAGGTGTGTAGTG
TGATCATTTGTGTCAAGGCGGTTGCTTTGACCCTCGCCTTGCTTCAGGTC
TTTGCCAGAAGGTGGTGTAGAGTAGTGTTTTCTTACATGTATCGACCCTG
ATGCTCTTCGCAGCTTGTTTAGGTAACAATAGTGGTAGTCCCTGCATTTG
CCTCGATAGCACGGCCGGTTGCCCTGTATGGAGCCCGCGAAATTGCCTGG
CGTCCAGGGTCGTGACGGACTGACAGACTGTTGGTGCTTTTATCACACTG
CCGTGCTGTCGCTGACAAAAATCAAAACACGAACCACCAACCCCTCAGAT
CGAAAAGGACAACGTGCACGTGTACACACTACACACACGCGCCATCCCTG
ACGTAACAACGTTTAAGAACAACACATGGCATCACATCAGGAAANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCTGATAGCGGCAACCGGTAAACGATTTGCGTGAGAGTCATGTGGC
GTGAAGTTAGCATTTGGGCGCAAGGCGGAAATAGGAAGGCATCCTGCGGA
AGGCCAGCGAGAAGATGACGCTGCTTCAATTTCTTGCGTCAATTGCTTCT
ACGAGTTGCTATCATTGGCCTATCTCTCATAACAACCACAACGGGGAGCC
CCACGAGTGGCGGGATCGTGGGTGATGGTCATGTTGTCTGGCCCACTGCG
CTTCGTGAGAACATCACTGACGGATACGCCTTTCGCTTCTCTTCCCCCCC
TTCTCCCTCCTCCTCACGTCTCCCGCCTGCTTGTTAGGCGGTGGCGGCGG
CGGCGGCGGGAACAAGAGCAGCGGATGGGGCAACCATTCGGGAGGGAAGC
GTCGACGGCAATGGCGGGGGCGACGGGGTAGCGATGACGACGACGATGAC
CGAGAGGAAGACAGCGGCAGCAAGGGCAACAGCAGCAGCAGCAGCAGCAG
CGGCAGCAGCAGCTGCAAAACCAGCGGGAAACTATATCTCAAGGTTCGCC
AGCCTTCGTCGAGGACCCCATGAACCCTTCCAGGCCATCAAGCTCTTTGT
GCATCCCTCAACCCGCTCCAAATTACCGGGTATCCTGCCAGCCGTGGTGC
CCGGTTTGGTTCCTTCGTTTCTGCTCTTGCCCGATGTCGTCCGGCCACTG
ACAGCCGCAGCATCTGTTCGTTTGATAAACCCCCTTTCGCCGTTTATCGT
CCCCCTCCCCCGTTATGACATGCCTTGATGTTTGCACTGTCTTGCAATCG
ACCGAGCCGTGAACGTCGGTTTTCGCATCCCGCATGCCGGCGCATCTTTA
CGAAGTAGGAGTAATCCGTTTGGAAACAGGGGCTCACAAACATCAAGAAT
TGGAGGGTACGAAACTTCAGCTCCCCGACGAATCTTACACTACTTCGAAG
CATCTATAACCTGTGCTCGACGGCGGCGACGAAAGAAGACATAGGGCCTA
GACCCGACGTTGCCGTTTTTTTCTTGCGGGCCCGTAACGATACAGGCAGG
CAGTCAGTCCAGGGCGTGTGCGATCGCTCGCACAGTTTCGGGAATCCTCT
GCCCTGGTGTTGCCTCTTGTTTCATAAATGGTGCCAGTTTCGCGCTTCGT
TGTGGAACGTGGCGCGCCTTTTTGCTCCCCCCCACCCCTACGCCCCCCCC
CTCGTTGCATCAGATCTTGAGCCTGTCGGAAAGCAAGGAGGCCAGCTCTT
CCTACGGGAAGGGAGACGTGTGGGCGCTGAGCGAGACCGGCCGTTTTTTT
GACGCCGCCAACGGCAGCGACGATGTCGTGTTCTGCAGGCAAGGCACTGC
TCCCTGGTCCTATCTCCCCTGAAACTCCCCCCCCCGCCCCCCGTCCGCTG
GACTCGTGGGGTGTGACACATTTAAAACGTTCATCTAGCGACCCTGCCTG
TTATGTATCTTGAAATGGCAAAGGGGGGCTTCTATGTCCTTGCACGATAT
CGGGATATCTTTTTGCACCGAATGAGGGGGCTCCGTGTCGTAGGTGTAGT
AAGCGGCTCTAACACGTGTCTTTTTCGGGTACCAGGGAACGAATGGCGGC
TCCCAGACACGAGACACTGAAGCACGGGTCCTAGCCGGCGCGACAATGCA
CGCCTCTCACACACTCTAACTCCTTGCAATCTCCCTGATCTACCGATGTG
GGGCAGGAGTCTGTGGCATGGCGTCTCTTCCCAGGGGATGCTTTCCGTCG
GGCCCCTTGGAGACGACTCCGAAGCTGTCAGGCTGGAGGCGATGGCAGGG
GGGGGAGCCACCGGTGGCGGTGGCAGCGGCGGCAGCAGCAGCGTCCGCTC
GATTCACGCCATACGCTGCTTCAACGCGCAGGTTAGTATGCTTGGTTCTT
CGTACCGCACGGCCGTGCCGCGAAGGACAAGATAAGGGAGCAGGGAGAGA
CGCACCACGTACGGAAGGTTCTGCACCGAACGAAACTGAGTGGTGTTCGC
ACACTCAGGCGGTGGGCCTTTGCAGCCTTTGTTGCAAACACATCATGTAT
TTTTCTCTTCTGGCTCATAGCTCGTTTGTTGTTGTGGTTTTCACCATCTG
TTCTTCTTTCCTGATACGTCGAAACCTCTTTCCATTTTTGTAGACGGACT
TGTCTGCACTGGACCTCTTGCGAAACGGCCGCCTGGGAGACGACGACGAC
GACGATGACGGGAACGGCAAGGTGTTGGCTACGGCCGCCGGTGAGCGGGG
GGTGCTGCCGGAGAGAAAAGTTCACGCAGGTTTCTGATCGGCAGATCGTT
TCTCAAAGGAAGGATCGGGTTGGTGAAAATTCCTCGCTTGGTCGTCGAAG
TGCGGTGTATGGTGCGGTCTGAGGGCTTTATACGGGCATGAGGGTTTCAT
GCTGGGCATATATAAGGACACCGGTTCGGTGTGATGGTTGCAGTATTGTC
TTAATTTTGCCGTGAGGAGGTTACCACGTTGTAGGTGGGCGTTCGTAACT
TGTGTCGAGGACCAGTACGGGATTTTGGGCGTAGTGCATTAGGGCGGGTG
ATCTTGGCGTACAACAACAGCCCCCGTGGTTGAGTTGTGGGTAGCTCCTT
GGTGTGCTCATCGCATCTGGACGCCGTGACTTACGTGCTGCTTTTCAAAC
AACAGCCAATACCACCAAAACAAGAACGCGAACAACCATCACCACCATAA
CAACAACATCGACAACTACATCAAGAACATACGCCCCCGAGCGCGGTTAT
TCCAACAATACAATCAGTGTCAGCCATCTTTGTTGCACTCTCTGACCAAC
ACACCATGCCCTTCCCCACGTCTCCAACTCCTGCTAAACATCAAGCCGGC
AATGCTCTGGGTAGAGGCAAAGGCCTGCTCGACCTGGACTCCGTCCCCGT
TCTTCCGTTCCTTCTTTCGGGGGGTCTCGCCCACGACGACTGCAACAACA
GCAGAAACAACAGCAGCAGCAAAAACGGCAGCAGCAACAGCAGCAACAGC
AGCAGCAAGAGCAGCAGCAGCAGCAGCGGTGAGCGCGTGTTCGACCTGTG
CCTGACGCGTCGGGAGCGCAACGCCGAGGTTGTCCAAACGGTGGAGGCTT
TCAGGCTCAACCGAGACCAGGCCCGTCTTCTCTGGCGCTGTGCGACCTGG
TTCCGCCCCGCTGAGGCTGCCGGTGAGAGTGTGCAAATAGGCGTTGCGGT
AACGAACAGTTGATGGCAGTCACTTGGAGAGGTAGGAGTCGCTCGGAGCA
CACCGTCATCGGCTGCGCGACTCGCGAAATTCCGGGTTGTGCCGCGACTG
ACGACCAACGCAGGTGACGATGACGGCGGCGAAAGCGACGCCGACGGCAA
GGACGGTGCAGGAACCAGAGGGAGGGACGAGGAGGAGAAGGGGGAGAACC
ATGAGCAGGGGCGTCCGACGGAGAAAGGAGGAGGGGGGAAGGCAGGGGAG
GACGGCGCCCCGGTTGTTCTCTTGCACGGCGTGTTCGGTGAGAGGGGAAG
GGGGACCGGTCTTGTCAGCGCTCTCGGCTGTGTAAGAAGCAGTTTCTTTT
CGGTGATTGAAACAGACAGTTTCGCTGCTAGTTTACTCGATTGATCATGA
GCCAAGCAACAGCTGGTGCGGCAGGACTGGACCTGCATTTTTCGCCGGGA
TTCACGTGCAGCAATTCACTAGCCTACCAGAGCAGTCCTCTCTCCCCGCT
GGGCGGCATGTCCCGCTAGCTGCAGCTCTCGTCGATGCCGTCCAACCCTC
ACCCTGCACCTTTCCTCCTACCCCTGCCTCCCCTCCTCGCTGCTTCCGCC
CATTGCGGTCCTTTTGTCGCTCCTGCCCTGATGGGTTGATGACGCTATCT
GACATTGTTCGGATGCGCCCGCGCGGGGTTTGTTCGCCGTCCACTATCAC
CACAAAAACAAAACAACCCGGCAACGACGACGTTCGCGACAACGACCATG
TTCACGGCGGCCATGGCGGCGTGCTGTACCACGATTTTCGCGTGGTCGAC
GTTGGTATCCCCCCTGGGTCTCCCTCGTCTCCTCTGTCTCTGACCAGGCG
CTGGAAAGTCTCTTACGCTGGTAAGCGAGGTTGTTGCTACGTTTGTCCTG
CTTTTCGTCACCCCCATGTGTTGACCGTCGTTGCTTCTAAGGTTTGACCC
TACCGAAGTCCTCGCCTCTTTCAAGTCGAAGAGCCCATGCCCGTGGAACA
TAAAGGGAGTGACAAAATACGGGCATTTTTTCCTCAAGTAGTTGTGTACC
AGGTGGCTCTCGCCCTTGACCCCGTGCTGCTCTAGCGTTTTCGACCTCGC
GACCCCTTCGCTCCCTATCCGGGCTTGATGCCACGTACCACGGTATGTTC
CACAAGAGCTGGTGTTTCTTATCTCCATTGTGGATCTACCACGATCCAGC
ACAACAGAGTATGAGGGGTTTCAGGGCACGGCTTCTCAACAACCGGACGA
TCGCAAGTGTGTGTGGTTGTGCTATATCATGAGTATGGCTCAAGAAACGA
AGGTTGCCCTGACTCCTTGAACGCCAAATTCTTGAGTGATGGCACTTTCT
ATGTATACCTTGCCTTACCTTGTGGCAGGCCTGCTTGCTACGAATCAGCG
CAGGACGTTCCTGCGTCCCTTCTGGCATTGTCGGGTGTGGAGCGATCACT
GGCTTCTTGTTTTGATGTCTCGTCCAATTAAAAAGTCAGCATGACTTTCG
CTCCATTTCGATCCCTTTGTTCTCTCCCGTGGGGTATGATTTTTAATGAA
ATCTTCCACAACGGTGCCGACTCACTCACAAGTGACAAACAAAATATGGC
TATTCACTCCTGCTCTCTGTTTTTCAAAAAGAAAACGTGGCCCCCATGTC
TGAATTAATGGTCGAGGGATGTCGTCACTCTTTCGATTCAATAGAATTTT
TGATCAACTCATATTTTTGCGTGAGCGTGATGTTTGAAAAGCCCCCACCG
TTTGTTTTGTTTGACGTCCGGTCTTTAGTTGTTCACGCGTGGATTGCAAG
GTCGGGTGTGATGATCGGCAACATCGTTACGGAAAAATATCTATCGGCAC
TTTCTGTCTTTGATGTTCGCTCTAACTTCTTACGTATCCAAATCTTGCGA
TTGTTCCTGGTCTCTGCGTGAGTGAGAAGGTGGCACTGTGCGTGATGGTC
GACAGGATAGCTACCGCGGATGCCCGCTTGAGGCCGTCACGTGGCCTCCG
CCCCAGGCCAAAGGCGGAACAAATCAGGGTTCTCCTCGCTTCCGGTACAA
ACGTCGCCGTCGACAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5759:308..7774+

>mRNA_Ecto-sp13_S_contig5759.16177.1 ID=mRNA_Ecto-sp13_S_contig5759.16177.1|Name=mRNA_Ecto-sp13_S_contig5759.16177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=909bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5759:308..7774+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTTCCGTCGGGCCCCTTGGAGACGACTCCGAAGCTGTCAGGCTGGA
GGCGATGGCAGGGGGGGGAGCCACCGGTGGCGGTGGCAGCGGCGGCAGCA
GCAGCGTCCGCTCGATTCACGCCATACGCTGCTTCAACGCGCAGACGGAC
TTGTCTGCACTGGACCTCTTGCGAAACGGCCGCCTGGGAGACGACGACGA
CGACGATGACGGGAACGGCAAGGTGTTGGCTACGGCCGCCGCCGGCAATG
CTCTGGGTAGAGGCAAAGGCCTGCTCGACCTGGACTCCGTCCCCGTTCTT
CCGTTCCTTCTTTCGGGGGGTCTCGCCCACGACGACTGCAACAACAGCAG
AAACAACAGCAGCAGCAAAAACGGCAGCAGCAACAGCAGCAACAGCAGCA
GCAAGAGCAGCAGCAGCAGCAGCGGTGAGCGCGTGTTCGACCTGTGCCTG
ACGCGTCGGGAGCGCAACGCCGAGGTTGTCCAAACGGTGGAGGCTTTCAG
GCTCAACCGAGACCAGGCCCGTCTTCTCTGGCGCTGTGCGACCTGGTTCC
GCCCCGCTGAGGCTGCCGGTGAGAGTGACGATGACGGCGGCGAAAGCGAC
GCCGACGGCAAGGACGGTGCAGGAACCAGAGGGAGGGACGAGGAGGAGAA
GGGGGAGAACCATGAGCAGGGGCGTCCGACGGAGAAAGGAGGAGGGGGGA
AGGCAGGGGAGGACGGCGCCCCGGTTGTTCTCTTGCACGGCGTGTTCGGC
GCTGGAAAGTCTCTTACGCTGGTGGCACTGTGCGTGATGGTCGACAGGAT
AGCTACCGCGGATGCCCGCTTGAGGCCGTCACGTGGCCTCCGCCCCAGGC
CAAAGGCGGAACAAATCAGGGTTCTCCTCGCTTCCGGTACAAACGTCGCC
GTCGACAGG
back to top