prot_Ecto-sp13_S_contig56366.15978.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig56366.15978.1
Unique Nameprot_Ecto-sp13_S_contig56366.15978.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length40
Homology
BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: D7G8Q3_ECTSI (Mitochondrial ribosomal protein L46 isoform 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q3_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 3.640e-19
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0
Query:    1 TPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWE 40
            TPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWE
Sbjct:  160 TPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWE 199          
BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: A0A401S5P1_CHIPU (Uncharacterized protein n=1 Tax=Chiloscyllium punctatum TaxID=137246 RepID=A0A401S5P1_CHIPU)

HSP 1 Score: 52.0 bits (123), Expect = 9.520e-7
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 0
Query:    3 ADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWE 40
            ADE NDR+TL+R LD++L+L+VK + GDE  W LP+S W+
Sbjct:   77 ADEKNDRSTLNRQLDKKLILLVKEKVGDEEIWLLPQSEWK 116          
BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: UPI001B7E6674 (39S ribosomal protein L46, mitochondrial isoform X1 n=2 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7E6674)

HSP 1 Score: 50.8 bits (120), Expect = 3.340e-6
Identity = 22/40 (55.00%), Postives = 32/40 (80.00%), Query Frame = 0
Query:    3 ADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWE 40
            AD+ ND++TL+R LDE+L+L+VK + GDE  W LP+S W+
Sbjct:  149 ADKKNDKSTLNRRLDEKLILLVKEKVGDEGIWLLPQSEWK 188          
BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: A0A670Y8I9_PSETE (Mitochondrial ribosomal protein L46 n=5 Tax=Colubroidea TaxID=34989 RepID=A0A670Y8I9_PSETE)

HSP 1 Score: 50.4 bits (119), Expect = 4.430e-6
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 0
Query:    1 TPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWE 40
            T AD+ NDRT+L+R LD+ L+L+VK + GDE  W LP++ W+
Sbjct:  134 TEADQKNDRTSLNRKLDQNLLLLVKQKFGDEDIWLLPQTEWQ 175          
BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: UPI001CB86EF2 (39S ribosomal protein L46, mitochondrial isoform X1 n=2 Tax=Chiloscyllium plagiosum TaxID=36176 RepID=UPI001CB86EF2)

HSP 1 Score: 50.4 bits (119), Expect = 4.560e-6
Identity = 22/40 (55.00%), Postives = 32/40 (80.00%), Query Frame = 0
Query:    3 ADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWE 40
            AD+ NDR+TL+R LD++L+L+VK + GDE  W LP+S W+
Sbjct:  146 ADKKNDRSTLNRQLDKKLILLVKEKVGDEEIWLLPQSEWK 185          
BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: UPI0009A352A9 (39S ribosomal protein L46, mitochondrial isoform X1 n=2 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A352A9)

HSP 1 Score: 50.1 bits (118), Expect = 6.270e-6
Identity = 22/40 (55.00%), Postives = 32/40 (80.00%), Query Frame = 0
Query:    3 ADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWE 40
            AD+ +DR+TL+R LDE+L+L+VK + GDE  W LP+S W+
Sbjct:  146 ADKKSDRSTLNRRLDEKLILLVKEKVGDEEIWLLPQSEWK 185          
BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: UPI001403F1D4 (39S ribosomal protein L46, mitochondrial n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI001403F1D4)

HSP 1 Score: 50.1 bits (118), Expect = 6.330e-6
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 0
Query:    3 ADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAW 39
            AD+ NDR+TL+R LDE+L+L+VK + GDE  W LP+S W
Sbjct:  156 ADKRNDRSTLNRRLDEKLLLLVKEKVGDEEIWLLPQSYW 194          
BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: UPI000D6A364F (39S ribosomal protein L46, mitochondrial isoform X2 n=2 Tax=Python bivittatus TaxID=176946 RepID=UPI000D6A364F)

HSP 1 Score: 49.7 bits (117), Expect = 6.570e-6
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 0
Query:    1 TPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWE 40
            T AD +NDRT+L+R LD+ L+L+VK + GDE  W LP++ W+
Sbjct:   74 TDADRNNDRTSLNRKLDQNLLLLVKQKFGDEDIWVLPQTEWQ 115          
BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: A0A6J0SLY8_9SAUR (39S ribosomal protein L46, mitochondrial n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0SLY8_9SAUR)

HSP 1 Score: 49.3 bits (116), Expect = 1.160e-5
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 0
Query:    1 TPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWE 40
            T AD++NDRT+L+R LD+ L+L+VK   GD+  W LP++ WE
Sbjct:  136 TDADKNNDRTSLNRKLDQNLLLLVKHNFGDQTVWLLPQTEWE 177          
BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: A0A6P3EPN3_OCTDE (39S ribosomal protein L46, mitochondrial n=1 Tax=Octodon degus TaxID=10160 RepID=A0A6P3EPN3_OCTDE)

HSP 1 Score: 49.3 bits (116), Expect = 1.160e-5
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 0
Query:    1 TPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWE 40
            T AD+ NDRT+L R LD +LVL+V+ R GDE  W LP+  W+
Sbjct:  139 TEADKKNDRTSLHRKLDRKLVLLVRERFGDEDVWLLPQIEWQ 180          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7G8Q3_ECTSI3.640e-19100.00Mitochondrial ribosomal protein L46 isoform 2 n=2 ... [more]
A0A401S5P1_CHIPU9.520e-757.50Uncharacterized protein n=1 Tax=Chiloscyllium punc... [more]
UPI001B7E66743.340e-655.0039S ribosomal protein L46, mitochondrial isoform X... [more]
A0A670Y8I9_PSETE4.430e-652.38Mitochondrial ribosomal protein L46 n=5 Tax=Colubr... [more]
UPI001CB86EF24.560e-655.0039S ribosomal protein L46, mitochondrial isoform X... [more]
UPI0009A352A96.270e-655.0039S ribosomal protein L46, mitochondrial isoform X... [more]
UPI001403F1D46.330e-658.9739S ribosomal protein L46, mitochondrial n=1 Tax=A... [more]
UPI000D6A364F6.570e-652.3839S ribosomal protein L46, mitochondrial isoform X... [more]
A0A6J0SLY8_9SAUR1.160e-552.3839S ribosomal protein L46, mitochondrial n=1 Tax=P... [more]
A0A6P3EPN3_OCTDE1.160e-554.7639S ribosomal protein L46, mitochondrial n=1 Tax=O... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.79.10coord: 8..40
e-value: 7.0E-7
score: 31.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56366contigEcto-sp13_S_contig56366:589..708 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56366.15978.1mRNA_Ecto-sp13_S_contig56366.15978.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig56366 589..708 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig56366.15978.1 ID=prot_Ecto-sp13_S_contig56366.15978.1|Name=mRNA_Ecto-sp13_S_contig56366.15978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=40bp
TPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWE
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