mRNA_Ecto-sp13_S_contig56366.15978.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56366.15978.1
Unique NamemRNA_Ecto-sp13_S_contig56366.15978.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: D7G8Q3_ECTSI (Mitochondrial ribosomal protein L46 isoform 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q3_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 3.640e-19
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 TPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWE 120
            TPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWE
Sbjct:  160 TPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWE 199
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BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: A0A401S5P1_CHIPU (Uncharacterized protein n=1 Tax=Chiloscyllium punctatum TaxID=137246 RepID=A0A401S5P1_CHIPU)

HSP 1 Score: 52.0 bits (123), Expect = 9.520e-7
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    7 ADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWE 120
            ADE NDR+TL+R LD++L+L+VK + GDE  W LP+S W+
Sbjct:   77 ADEKNDRSTLNRQLDKKLILLVKEKVGDEEIWLLPQSEWK 116
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BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: UPI001B7E6674 (39S ribosomal protein L46, mitochondrial isoform X1 n=2 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7E6674)

HSP 1 Score: 50.8 bits (120), Expect = 3.340e-6
Identity = 22/40 (55.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    7 ADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWE 120
            AD+ ND++TL+R LDE+L+L+VK + GDE  W LP+S W+
Sbjct:  149 ADKKNDKSTLNRRLDEKLILLVKEKVGDEGIWLLPQSEWK 188
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BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: A0A670Y8I9_PSETE (Mitochondrial ribosomal protein L46 n=5 Tax=Colubroidea TaxID=34989 RepID=A0A670Y8I9_PSETE)

HSP 1 Score: 50.4 bits (119), Expect = 4.430e-6
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 TPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWE 120
            T AD+ NDRT+L+R LD+ L+L+VK + GDE  W LP++ W+
Sbjct:  134 TEADQKNDRTSLNRKLDQNLLLLVKQKFGDEDIWLLPQTEWQ 175
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BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: UPI001CB86EF2 (39S ribosomal protein L46, mitochondrial isoform X1 n=2 Tax=Chiloscyllium plagiosum TaxID=36176 RepID=UPI001CB86EF2)

HSP 1 Score: 50.4 bits (119), Expect = 4.560e-6
Identity = 22/40 (55.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    7 ADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWE 120
            AD+ NDR+TL+R LD++L+L+VK + GDE  W LP+S W+
Sbjct:  146 ADKKNDRSTLNRQLDKKLILLVKEKVGDEEIWLLPQSEWK 185
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BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: UPI0009A352A9 (39S ribosomal protein L46, mitochondrial isoform X1 n=2 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A352A9)

HSP 1 Score: 50.1 bits (118), Expect = 6.270e-6
Identity = 22/40 (55.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    7 ADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWE 120
            AD+ +DR+TL+R LDE+L+L+VK + GDE  W LP+S W+
Sbjct:  146 ADKKSDRSTLNRRLDEKLILLVKEKVGDEEIWLLPQSEWK 185
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BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: UPI001403F1D4 (39S ribosomal protein L46, mitochondrial n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI001403F1D4)

HSP 1 Score: 50.1 bits (118), Expect = 6.330e-6
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    7 ADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAW 117
            AD+ NDR+TL+R LDE+L+L+VK + GDE  W LP+S W
Sbjct:  156 ADKRNDRSTLNRRLDEKLLLLVKEKVGDEEIWLLPQSYW 194
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BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: UPI000D6A364F (39S ribosomal protein L46, mitochondrial isoform X2 n=2 Tax=Python bivittatus TaxID=176946 RepID=UPI000D6A364F)

HSP 1 Score: 49.7 bits (117), Expect = 6.570e-6
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 TPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWE 120
            T AD +NDRT+L+R LD+ L+L+VK + GDE  W LP++ W+
Sbjct:   74 TDADRNNDRTSLNRKLDQNLLLLVKQKFGDEDIWVLPQTEWQ 115
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BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: A0A6J0SLY8_9SAUR (39S ribosomal protein L46, mitochondrial n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0SLY8_9SAUR)

HSP 1 Score: 49.3 bits (116), Expect = 1.160e-5
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 TPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWE 120
            T AD++NDRT+L+R LD+ L+L+VK   GD+  W LP++ WE
Sbjct:  136 TDADKNNDRTSLNRKLDQNLLLLVKHNFGDQTVWLLPQTEWE 177
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BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Match: A0A6P3EPN3_OCTDE (39S ribosomal protein L46, mitochondrial n=1 Tax=Octodon degus TaxID=10160 RepID=A0A6P3EPN3_OCTDE)

HSP 1 Score: 49.3 bits (116), Expect = 1.160e-5
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 TPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWE 120
            T AD+ NDRT+L R LD +LVL+V+ R GDE  W LP+  W+
Sbjct:  139 TEADKKNDRTSLHRKLDRKLVLLVRERFGDEDVWLLPQIEWQ 180
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56366.15978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7G8Q3_ECTSI3.640e-19100.00Mitochondrial ribosomal protein L46 isoform 2 n=2 ... [more]
A0A401S5P1_CHIPU9.520e-757.50Uncharacterized protein n=1 Tax=Chiloscyllium punc... [more]
UPI001B7E66743.340e-655.0039S ribosomal protein L46, mitochondrial isoform X... [more]
A0A670Y8I9_PSETE4.430e-652.38Mitochondrial ribosomal protein L46 n=5 Tax=Colubr... [more]
UPI001CB86EF24.560e-655.0039S ribosomal protein L46, mitochondrial isoform X... [more]
UPI0009A352A96.270e-655.0039S ribosomal protein L46, mitochondrial isoform X... [more]
UPI001403F1D46.330e-658.9739S ribosomal protein L46, mitochondrial n=1 Tax=A... [more]
UPI000D6A364F6.570e-652.3839S ribosomal protein L46, mitochondrial isoform X... [more]
A0A6J0SLY8_9SAUR1.160e-552.3839S ribosomal protein L46, mitochondrial n=1 Tax=P... [more]
A0A6P3EPN3_OCTDE1.160e-554.7639S ribosomal protein L46, mitochondrial n=1 Tax=O... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56366contigEcto-sp13_S_contig56366:589..708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score87.0
Seed ortholog evalue2.1e-15
Seed eggNOG ortholog2880.D7G8Q3
Preferred nameMRPL46
Model size120
KEGG rclassRC02416
KEGG koko:K02519,ko:K05607,ko:K08860,ko:K17427
KEGG ReactionR02085
KEGG Pathwayko00280,ko01100,ko04137,ko04140,ko04141,ko04210,ko04214,ko04932,ko05010,ko05160,ko05162,ko05164,ko05168,ko05169,map00280,map01100,map04137,map04140,map04141,map04210,map04214,map04932,map05010,map05160,map05162,map05164,map05168,map05169
KEGG ModuleM00036
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0030054,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.mitochondrial translation
EggNOG OGsKOG4548@1,KOG4548@2759
EC2.7.11.1,4.2.1.18
Cds size120
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03011,ko03012,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463781.002443-CDS-Ecto-sp13_S_contig56366:588..7081681463781.002443-CDS-Ecto-sp13_S_contig56366:588..708Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56366 589..708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56366.15978.1prot_Ecto-sp13_S_contig56366.15978.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56366 589..708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56366.15978.1

>prot_Ecto-sp13_S_contig56366.15978.1 ID=prot_Ecto-sp13_S_contig56366.15978.1|Name=mRNA_Ecto-sp13_S_contig56366.15978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=40bp
TPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWE
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mRNA from alignment at Ecto-sp13_S_contig56366:589..708+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56366.15978.1 ID=mRNA_Ecto-sp13_S_contig56366.15978.1|Name=mRNA_Ecto-sp13_S_contig56366.15978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56366:589..708+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACTCCTGCTGACGAGTCGAACGACCGCACGACTCTGGATCGGGCACTTGA
CGAGCGACTAGTGTTGATCGTCAAGCCTAGAAGTGGGGATGAGTGGCGTC
TTCCTGAGAGTGCATGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56366:589..708+

>mRNA_Ecto-sp13_S_contig56366.15978.1 ID=mRNA_Ecto-sp13_S_contig56366.15978.1|Name=mRNA_Ecto-sp13_S_contig56366.15978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56366:589..708+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACTCCTGCTGACGAGTCGAACGACCGCACGACTCTGGATCGGGCACTTGA
CGAGCGACTAGTGTTGATCGTCAAGCCTAGAAGTGGGGATGAGTGGCGTC
TTCCTGAGAGTGCATGGGAG
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