prot_Ecto-sp13_S_contig55935.15911.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig55935.15911.1
Unique Nameprot_Ecto-sp13_S_contig55935.15911.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length184
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig55935.15911.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008865DNA replication terminus site-binding proteinPFAMPF05472Tercoord: 16..179
e-value: 2.1E-29
score: 102.5
IPR036381Replication terminator Tus, domain 1GENE3D3.50.14.10coord: 6..181
e-value: 5.3E-31
score: 109.9
IPR036384Replication terminator Tus superfamilySUPERFAMILY56596Replication terminator protein (Tus)coord: 9..177

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig55935contigEcto-sp13_S_contig55935:355..906 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig55935.15911.1mRNA_Ecto-sp13_S_contig55935.15911.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig55935 355..906 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig55935.15911.1 ID=prot_Ecto-sp13_S_contig55935.15911.1|Name=mRNA_Ecto-sp13_S_contig55935.15911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=184bp
MDNSEITSALNLLHDDITDGIEALKTLLRDSSFSKASVFQLPATEQGEDL
PPVEAIEPTQIDGVAAFGLALDALSKTTAVGNESTRYVFRLPGAISVETS
TPDQFTGIVNKVNTAKDQFDKVAHRIKDEDHRFELLHTIFPKLIYPQLIR
KLQVCTRQTKSVTFTWGQKPSSSTITVEQADNRL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008865DNA_replication_term_site-bd
IPR036381Tus_dom1
IPR036384Tus_sf